View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7779_low_26 (Length: 267)
Name: NF7779_low_26
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7779_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 28858935 - 28858681
Alignment:
| Q |
1 |
gaaagaatatatcatacatatgtcagttacaattataatctgttatgttcattaatttagcagcaaccgtgtttaagaataaatcacagtatcacattac |
100 |
Q |
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| T |
28858935 |
gaaagaatatatcatacatatgtcagttacaattataatctgttatgttcattaatttagcagcaaccgcgtttaagaataaatcacagtatcacattac |
28858836 |
T |
|
| Q |
101 |
atatatcaatgccgtgtatcaactgttaagtacttcatttataaatcttaacacgtctataatatttaagaaggcacatagagagcattagttatggaac |
200 |
Q |
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| T |
28858835 |
atatatcaatgccgtgtatcaactgttaagtacttcatttataaatcttaacacgtctataatatttaagaaggcacatagagagcattagttatggaac |
28858736 |
T |
|
| Q |
201 |
aaaatgctcaaatttggaatgagcattaatgtgtaaagcttggatttggcgcctt |
255 |
Q |
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| T |
28858735 |
aaaatgctcaaatttggaatgagcattaatgtgtaaggcttggatttggcgcctt |
28858681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 28843414 - 28843262
Alignment:
| Q |
1 |
gaaagaatatatcatacatatgtcagttacaattataatctgttatgttcattaatttagcagcaaccgtgtttaagaataaatcacagtatcacattac |
100 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||||| |||| |||| |||||||||| ||||| ||||| ||||||||||||| | || |
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| T |
28843414 |
gaaagaatatatcatatatatgtcagttataattataatctgttatattcagtaatcgggcagcaaccgcgtttaggaatagatcacagtatcacttcac |
28843315 |
T |
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| Q |
101 |
atatatcaatgccgtgtatcaactgttaagtacttcatttataaatcttaaca |
153 |
Q |
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| T |
28843314 |
acatatcaatgctgtgtatcaactgttaagtacctcttttataaatctaaaca |
28843262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 159 - 255
Target Start/End: Complemental strand, 28874118 - 28874022
Alignment:
| Q |
159 |
ataatatttaagaaggcacatagagagcattagttatggaacaaaatgctcaaatttggaatgagcattaatgtgtaaagcttggatttggcgcctt |
255 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| | | ||||||| ||| ||||||| |
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| T |
28874118 |
ataatatttaagaaggcacatagagaacattagttatggaacaatatgctcaaatttgaaatgagcattaatgcgcagagcttgggtttagcgcctt |
28874022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 28874241 - 28874169
Alignment:
| Q |
54 |
aatttagcagcaaccgtgtttaagaataaatcacagtatcacattacatatatcaatgccgtgtatcaactgt |
126 |
Q |
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||||||||| |||||| ||||||||| ||| |||||||||||||||||||||| |||| ||||||||||||| |
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| T |
28874241 |
aatttagcaacaaccgcgtttaagaaaaaaacacagtatcacattacatatattaatgttgtgtatcaactgt |
28874169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 142
Target Start/End: Complemental strand, 12880145 - 12880117
Alignment:
| Q |
114 |
gtgtatcaactgttaagtacttcatttat |
142 |
Q |
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| T |
12880145 |
gtgtatcaactgttaagtacttcatttat |
12880117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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