View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7779_low_27 (Length: 267)
Name: NF7779_low_27
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7779_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 33950762 - 33950530
Alignment:
| Q |
21 |
tctggggtgatccaaatgatcattgtattgctttatatcttgtacaacgggagataaatcctttaagattaacctcaatgatcgccttgaactttggttc |
120 |
Q |
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| T |
33950762 |
tctggggtgatccaaatgatcattgtattgctttatatcttgtacaacgggagataaatcctttaagattaacctcaatgatcgccttgaactttggttc |
33950663 |
T |
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| Q |
121 |
ttttgtgctttttgaagaatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgtgtagcgctactcatgaatt |
220 |
Q |
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| T |
33950662 |
ttttgtgctttttgaagaatttgagatattttgttcaagacatcattaaattgaaatcttgttgtaagggtaataatgtgtgtagcgctactcatgaatt |
33950563 |
T |
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| Q |
221 |
tgagattccttcttctgtttttgcctgtctgtg |
253 |
Q |
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| T |
33950562 |
tgagattccttcttctgtttttgcctgtctgtg |
33950530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 249
Target Start/End: Complemental strand, 33990238 - 33990013
Alignment:
| Q |
21 |
tctggggtgatccaaatgatcattgtattgctttatatcttgtacaacgggagataaatcctttaagattaacctcaatgatcgccttgaactttggttc |
120 |
Q |
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| T |
33990238 |
tctgggatgatccaaatgttcattgtattgctttatgtcttgaaccacaagagttaaatccttcaagattgacctcaacaattgccttgcactttggtgc |
33990139 |
T |
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| Q |
121 |
ttttgtgctttttgaagaatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgtgta---gcgctactcatga |
217 |
Q |
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| T |
33990138 |
tttcgtgctgtttcaactatttgagatattttgttcaagacatcatg------aaatcttgttgtaagggtaataatatgtgtagtggcgctactcatga |
33990045 |
T |
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| Q |
218 |
atttgagattccttcttctgtttttgcctgtc |
249 |
Q |
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| T |
33990044 |
atttgagattccttcctctgcttttgcctgtc |
33990013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 33973426 - 33973227
Alignment:
| Q |
21 |
tctggggtgatccaaatgatcattgtattgctttatatcttgtacaacgggagataaatcctttaagattaacctcaatgatcgccttgaactttggttc |
120 |
Q |
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| T |
33973426 |
tctgggttgatccaagtgttcattgtaatgctttatatcttgtacaacgggagataaatcctttaagattaacctaaacaatagccttgaactttggttc |
33973327 |
T |
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| Q |
121 |
ttttgtgctttttgaagaatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgt---gtagcgctactcatga |
217 |
Q |
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| T |
33973326 |
tttcgtgctgtttcaactatttcagatattttgttcaagacatca------ttaaatcttgttgtaagggtaataatatgtgtcgtggcgctactcatga |
33973233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 120 - 222
Target Start/End: Complemental strand, 33959349 - 33959247
Alignment:
| Q |
120 |
cttttgtgctttttgaagaatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgtgtagcgctactcatgaat |
219 |
Q |
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| T |
33959349 |
ctttcgtgctttttgaagtatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgtgtagcgctactcatgaat |
33959250 |
T |
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| Q |
220 |
ttg |
222 |
Q |
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||| |
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| T |
33959249 |
ttg |
33959247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 33959409 - 33959346
Alignment:
| Q |
21 |
tctggggtgatccaaatgatcattgtattgctttatatcttgtacaacgggagataaatccttt |
84 |
Q |
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| T |
33959409 |
tctggggtgatccaaatgatcattgtattgctttatgtcttgaaccacaggagataaatccttt |
33959346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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