View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7779_low_29 (Length: 253)

Name: NF7779_low_29
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7779_low_29
NF7779_low_29
[»] chr7 (10 HSPs)
chr7 (14-115)||(48307571-48307672)
chr7 (14-118)||(48296256-48296360)
chr7 (198-233)||(7342915-7342950)
chr7 (198-233)||(16281547-16281582)
chr7 (198-233)||(16295751-16295786)
chr7 (198-233)||(17453262-17453297)
chr7 (198-233)||(17463974-17464009)
chr7 (198-233)||(17589205-17589240)
chr7 (198-233)||(48296440-48296475)
chr7 (198-233)||(12594519-12594555)
[»] chr8 (2 HSPs)
chr8 (198-233)||(14336984-14337019)
chr8 (198-233)||(23602156-23602191)
[»] chr6 (1 HSPs)
chr6 (198-233)||(12391953-12391988)
[»] chr4 (2 HSPs)
chr4 (198-233)||(55789856-55789891)
chr4 (198-232)||(40816834-40816868)
[»] chr3 (1 HSPs)
chr3 (198-233)||(13554443-13554478)
[»] chr5 (2 HSPs)
chr5 (198-233)||(346198-346233)
chr5 (198-233)||(360833-360868)


Alignment Details
Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 48307571 - 48307672
Alignment:
Q  14 aaactttaccatttgaacattccctttatcagtttaacaattataattgatgttaaagttacaagttacaacaaagtaaaatagaaggggacatatcctt 113  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  48307571 aaacattaccatttgaacattccctttatcagtttaacaattataattgatgttaaagttacaagttacaacaaagtaaaatagaaggggacatatactt 48307670  T
Q  114 aa 115  Q
    ||    
T  48307671 aa 48307672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 48296256 - 48296360
Alignment:
Q  14 aaactttaccatttgaacattccctttatcagtttaacaattataattgatgttaaagttacaagttacaacaaagtaaaatagaaggggacatatcctt 113  Q
    |||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||    
T  48296256 aaacattaccatttgaacattccctttataattttaacaattataattgatgttaaagttacaagttaaaacaaagtaaaatagaaggggacatatactt 48296355  T
Q  114 aaatt 118  Q
    |||||    
T  48296356 aaatt 48296360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 233
Target Start/End: Original strand, 7342915 - 7342950
Alignment:
Q  198 ggagatgatatacctttgtgggagagtagaagaaag 233  Q
    ||||||||||||||||||||||||||||||||||||    
T  7342915 ggagatgatatacctttgtgggagagtagaagaaag 7342950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 233
Target Start/End: Original strand, 16281547 - 16281582
Alignment:
Q  198 ggagatgatatacctttgtgggagagtagaagaaag 233  Q
    ||||||||||||||||||||||||||||||||||||    
T  16281547 ggagatgatatacctttgtgggagagtagaagaaag 16281582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 233
Target Start/End: Original strand, 16295751 - 16295786
Alignment:
Q  198 ggagatgatatacctttgtgggagagtagaagaaag 233  Q
    ||||||||||||||||||||||||||||||||||||    
T  16295751 ggagatgatatacctttgtgggagagtagaagaaag 16295786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 233
Target Start/End: Original strand, 17453262 - 17453297
Alignment:
Q  198 ggagatgatatacctttgtgggagagtagaagaaag 233  Q
    ||||||||| ||||||||||||||||||||||||||    
T  17453262 ggagatgatttacctttgtgggagagtagaagaaag 17453297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 233
Target Start/End: Complemental strand, 17464009 - 17463974
Alignment:
Q  198 ggagatgatatacctttgtgggagagtagaagaaag 233  Q
    ||||||||| ||||||||||||||||||||||||||    
T  17464009 ggagatgatttacctttgtgggagagtagaagaaag 17463974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 233
Target Start/End: Original strand, 17589205 - 17589240
Alignment:
Q  198 ggagatgatatacctttgtgggagagtagaagaaag 233  Q
    ||||||||| ||||||||||||||||||||||||||    
T  17589205 ggagatgatttacctttgtgggagagtagaagaaag 17589240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 233
Target Start/End: Original strand, 48296440 - 48296475
Alignment:
Q  198 ggagatgatatacctttgtgggagagtagaagaaag 233  Q
    ||||||||||||| ||||||||||||||||||||||    
T  48296440 ggagatgatatacttttgtgggagagtagaagaaag 48296475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 233
Target Start/End: Complemental strand, 12594555 - 12594519
Alignment:
Q  198 ggagatgatataccttt-gtgggagagtagaagaaag 233  Q
    ||||||||||||||||| |||||||||||||||||||    
T  12594555 ggagatgatataccttttgtgggagagtagaagaaag 12594519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 233
Target Start/End: Original strand, 14336984 - 14337019
Alignment:
Q  198 ggagatgatatacctttgtgggagagtagaagaaag 233  Q
    ||||||||||||||||||||||||||||||||||||    
T  14336984 ggagatgatatacctttgtgggagagtagaagaaag 14337019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 233
Target Start/End: Original strand, 23602156 - 23602191
Alignment:
Q  198 ggagatgatatacctttgtgggagagtagaagaaag 233  Q
    ||||||||||||||||||||||||||||||||||||    
T  23602156 ggagatgatatacctttgtgggagagtagaagaaag 23602191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 233
Target Start/End: Complemental strand, 12391988 - 12391953
Alignment:
Q  198 ggagatgatatacctttgtgggagagtagaagaaag 233  Q
    ||||||||||||||||||||||||||||||||||||    
T  12391988 ggagatgatatacctttgtgggagagtagaagaaag 12391953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 233
Target Start/End: Complemental strand, 55789891 - 55789856
Alignment:
Q  198 ggagatgatatacctttgtgggagagtagaagaaag 233  Q
    ||||||||||||||||||||||||||||||||||||    
T  55789891 ggagatgatatacctttgtgggagagtagaagaaag 55789856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 232
Target Start/End: Original strand, 40816834 - 40816868
Alignment:
Q  198 ggagatgatatacctttgtgggagagtagaagaaa 232  Q
    |||||||||||||||||||||||||||||||||||    
T  40816834 ggagatgatatacctttgtgggagagtagaagaaa 40816868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 233
Target Start/End: Complemental strand, 13554478 - 13554443
Alignment:
Q  198 ggagatgatatacctttgtgggagagtagaagaaag 233  Q
    ||||||||||||||||||||||||||||||||||||    
T  13554478 ggagatgatatacctttgtgggagagtagaagaaag 13554443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 233
Target Start/End: Original strand, 346198 - 346233
Alignment:
Q  198 ggagatgatatacctttgtgggagagtagaagaaag 233  Q
    |||||||||||||| |||||||||||||||||||||    
T  346198 ggagatgatatacccttgtgggagagtagaagaaag 346233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 233
Target Start/End: Original strand, 360833 - 360868
Alignment:
Q  198 ggagatgatatacctttgtgggagagtagaagaaag 233  Q
    |||||||||||||| |||||||||||||||||||||    
T  360833 ggagatgatatacccttgtgggagagtagaagaaag 360868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University