View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7779_low_3 (Length: 310)
Name: NF7779_low_3
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7779_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 35049091 - 35049358
Alignment:
| Q |
20 |
gtaatctatcgaggcctaacttctgatcattgtagaacgagaattatgatatgaaagttaccgaaacttatgcttcatttgtgttttagttaaatcaaaa |
119 |
Q |
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| T |
35049091 |
gtaacctatcgaggcctaacttccgatcattgtagaacgaaaattatgatatgaaagttaccgaaacttatgcttcatttgagttttagttaaatcaaaa |
35049190 |
T |
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| Q |
120 |
ttttccaaacattttccttaatccagcaagtgatttcatcgaacgatatcaaagatattgcatttgttgtgacatccttttaggttagggtttttgtgga |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35049191 |
ttttccaaacattttccttaatccagcaagtgatttcatcgaacgatatcaaagatattgcatttgttgtggcatccttttaggttagggtttttgtgga |
35049290 |
T |
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| Q |
220 |
atgtagatgtagtttagaaactttgtagttgttgactaagcaaaatgtgattgtgaagtatatgtatt |
287 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35049291 |
atgtagatgtagtttagaaactttgtagttgttgattaagcaaaatgtgattgtgaagtatatgtatt |
35049358 |
T |
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