View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7779_low_31 (Length: 250)
Name: NF7779_low_31
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7779_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 42001529 - 42001759
Alignment:
| Q |
1 |
atattacacaatcaaagaaaatgtgatttaatattgatatgctaaaattcagaaaaataaatcttatcctataggctgttagtatatgtctagcatgtag |
100 |
Q |
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| T |
42001529 |
atattacacaag-aaagaaaatgtgatttaatattgatatgctaaaattcagaaaaataaatcttatcctataggctgttagtatatgtctagcatgtag |
42001627 |
T |
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| Q |
101 |
tctatgactgttgcaagaataaaatccttaattcatttactcactctttgtattccctcacattttgttagacaacgaagatattttgtttgacaaaagt |
200 |
Q |
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| T |
42001628 |
tctatgactgttgcaagaataaaatccttaattcatttactcgctctttgtattccctcacattttgttagacaacgaagatattttgtttgacaaaagt |
42001727 |
T |
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| Q |
201 |
agggaggtagaagcacatgaagacaagaacct |
232 |
Q |
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| T |
42001728 |
aggaaggtagaagcacatgaagacaagaacct |
42001759 |
T |
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