View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7779_low_39 (Length: 238)
Name: NF7779_low_39
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7779_low_39 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 30873840 - 30874060
Alignment:
| Q |
18 |
gaacacactcaaacttgtagctcctggaggagctggtggtggtagaaacgatccggacaaagaaagtatttcaaaccttccgtgtaaagtcactacagat |
117 |
Q |
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| T |
30873840 |
gaacacactcaaacttgtagctcctggaggagctggtggtggtagaaacgatccggacaaagaaagtatttcaaaccttccatgtaaagtcactacagat |
30873939 |
T |
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| Q |
118 |
cctgcggcagctggctgtcgcagggtcacgttagtgactgttccactcccactaaggacacagatccctctttgacgctttcttgcataggtagccacag |
217 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30873940 |
cctgcggcagctggctgtcgcaaggtcacgttagtgactgttccactcccactaaggacacagatccctctttgacgctttcttgcataagtagccacag |
30874039 |
T |
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| Q |
218 |
agtcaaacacatcacaaccac |
238 |
Q |
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| T |
30874040 |
agtcaaacacatcacaaccac |
30874060 |
T |
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