View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7779_low_4 (Length: 244)

Name: NF7779_low_4
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7779_low_4
NF7779_low_4
[»] chr5 (8 HSPs)
chr5 (1-244)||(15063472-15063714)
chr5 (78-244)||(26455373-26455539)
chr5 (70-182)||(30064953-30065065)
chr5 (75-202)||(12022158-12022285)
chr5 (75-202)||(40368409-40368536)
chr5 (74-202)||(7100535-7100663)
chr5 (75-202)||(37680905-37681032)
chr5 (74-202)||(16797537-16797665)
[»] chr8 (8 HSPs)
chr8 (77-244)||(17783267-17783434)
chr8 (75-202)||(1290193-1290320)
chr8 (74-202)||(198845-198973)
chr8 (74-202)||(313682-313810)
chr8 (74-202)||(30406964-30407092)
chr8 (74-202)||(43808644-43808772)
chr8 (75-202)||(41948677-41948806)
chr8 (138-202)||(31474317-31474381)
[»] chr6 (6 HSPs)
chr6 (75-244)||(15566020-15566189)
chr6 (75-202)||(17162965-17163092)
chr6 (74-202)||(8316665-8316793)
chr6 (75-202)||(27569344-27569471)
chr6 (138-244)||(17887748-17887854)
chr6 (5-46)||(15566228-15566269)
[»] chr4 (5 HSPs)
chr4 (75-202)||(31358030-31358157)
chr4 (74-202)||(44150426-44150554)
chr4 (93-198)||(50629096-50629201)
chr4 (69-124)||(1831399-1831454)
chr4 (70-196)||(18217902-18218028)
[»] chr3 (4 HSPs)
chr3 (75-202)||(53355364-53355491)
chr3 (74-202)||(54168505-54168633)
chr3 (140-202)||(43553228-43553290)
chr3 (141-202)||(21849134-21849195)
[»] chr1 (4 HSPs)
chr1 (75-202)||(43592870-43592999)
chr1 (74-202)||(26314881-26315009)
chr1 (19-69)||(30646172-30646222)
chr1 (141-242)||(30646301-30646402)
[»] chr7 (3 HSPs)
chr7 (74-202)||(7941244-7941372)
chr7 (74-202)||(27760265-27760393)
chr7 (140-244)||(13829224-13829328)
[»] chr2 (3 HSPs)
chr2 (74-202)||(8054260-8054388)
chr2 (138-202)||(35951599-35951663)
chr2 (74-202)||(36673919-36674047)
[»] scaffold0044 (1 HSPs)
scaffold0044 (74-202)||(46026-46154)
[»] scaffold0440 (1 HSPs)
scaffold0440 (75-202)||(6375-6502)


Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 15063714 - 15063472
Alignment:
Q  1 ttcttaaattgtctattagatgaagttgtgtatgttacacaacctccatgcttcaacattaaagggaagtattcagattacataaggctctttatggctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15063714 ttcttaaattgtctattagatgaagttgtgtatgttacacaacctccatgcttcaatattaaagggaagtattcagattacataaggctctttatggctt 15063615  T
Q  101 gaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaatctgaatatggtttgtatgtgaagaaa 200  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  15063614 gaagcaagtaccaagagcatggaataagaggcttggcagttttcttgtgcagcaagaatttgtgaaatgtaaatct-aatatggtttgtatgtgaagaaa 15063516  T
Q  201 gggaaaactggtaatcagatactcatttgcttatatgttgatga 244  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  15063515 gggaaaactggtaatcagatactcatgtgcttatatgttgatga 15063472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 78 - 244
Target Start/End: Complemental strand, 26455539 - 26455373
Alignment:
Q  78 ttacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaatctg 177  Q
    ||||| |||||||||||||| || ||||||| || ||  |||||||||||||   |||  || || |||||||||||| ||||||| |||||||| ||||    
T  26455539 ttacacaaggctctttatggtttaaagcaagcactaagggcatggaataagataattgacagcttccttgtgcagcaagaatttgtaaaatgtaagtctg 26455440  T
Q  178 aatatggtttgtatgtgaagaaagggaaaactggtaatcagatactcatttgcttatatgttgatga 244  Q
    | |||||  ||||||||||||||||  |||  |||||||| |||||||| ||  || ||||||||||    
T  26455439 agtatggcgtgtatgtgaagaaaggagaaagaggtaatcaaatactcatgtgtctacatgttgatga 26455373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 70 - 182
Target Start/End: Original strand, 30064953 - 30065065
Alignment:
Q  70 tattcagattacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatg 169  Q
    |||||||||||||||||||||| ||||| |||||||||   | || |||||||||||||||| |||  |  ||||| ||||||||| ||||||| |||||    
T  30064953 tattcagattacataaggctctatatggtttgaagcaatctctaagagcatggaataagaggattgtcaactttctagtgcagcaagaatttgtcaaatg 30065052  T
Q  170 taaatctgaatat 182  Q
     ||| ||||||||    
T  30065053 caaagctgaatat 30065065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 12022158 - 12022285
Alignment:
Q  75 agattacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaat 174  Q
    |||||||| || ||||| ||||| ||||| || | ||||| ||| ||||| |||||  |||  ||||||||||| |||||| ||||||| ||||| || |    
T  12022158 agattacacaaagctctctatggattgaaacaggcaccaagagcttggaacaagagaattgacagttttcttgtacagcaagaatttgtcaaatgcaagt 12022257  T
Q  175 ctgaatatggtttgtatgtgaagaaagg 202  Q
    |||| |||||| | ||||||||||||||    
T  12022258 ctgagtatggtgtatatgtgaagaaagg 12022285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 202
Target Start/End: Complemental strand, 40368536 - 40368409
Alignment:
Q  75 agattacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaat 174  Q
    |||||||| || ||||| ||||| ||||| || | ||||| ||| ||||| |||||  |||  || ||||||||||||||| ||||||| ||||| || |    
T  40368536 agattacacaaagctctctatggattgaaacaggcaccaagagcttggaacaagagaattgacagctttcttgtgcagcaagaatttgttaaatgcaagt 40368437  T
Q  175 ctgaatatggtttgtatgtgaagaaagg 202  Q
    |||| |||||| | ||||||||||||||    
T  40368436 ctgagtatggtgtatatgtgaagaaagg 40368409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 202
Target Start/End: Complemental strand, 7100663 - 7100535
Alignment:
Q  74 cagattacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaa 173  Q
    ||||||||| || ||||| ||||| ||||| || | ||||| ||| ||||| |||||  |||  || ||||||||| ||||| ||||||| ||||| ||     
T  7100663 cagattacacaaagctctctatggattgaaacaggcaccaagagcttggaacaagagaattgacagctttcttgtgaagcaagaatttgttaaatgcaag 7100564  T
Q  174 tctgaatatggtttgtatgtgaagaaagg 202  Q
    ||||| |||||| | ||||||||||||||    
T  7100563 tctgagtatggtgtatatgtgaagaaagg 7100535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 37680905 - 37681032
Alignment:
Q  75 agattacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaat 174  Q
    |||||||| || ||||| ||||| ||||| || | ||||| | | ||||| |||||  |||  ||||||||||| |||||| ||||||| ||||| || |    
T  37680905 agattacacaaagctctctatggattgaaacaggcaccaagaacttggaacaagagaattgacagttttcttgtacagcaagaatttgtcaaatgcaagt 37681004  T
Q  175 ctgaatatggtttgtatgtgaagaaagg 202  Q
    |||| |||||| | ||||||||||||||    
T  37681005 ctgagtatggtgtatatgtgaagaaagg 37681032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 202
Target Start/End: Original strand, 16797537 - 16797665
Alignment:
Q  74 cagattacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaa 173  Q
    ||||||||| || ||||| ||||| ||||| || | ||||| ||| ||||| |||||  |||  || ||||||||| || |  ||||||| ||||| ||     
T  16797537 cagattacacaaagctctctatggattgaaacaggcaccaagagcttggaacaagagaattgacagctttcttgtgaagtaggaatttgttaaatgcaag 16797636  T
Q  174 tctgaatatggtttgtatgtgaagaaagg 202  Q
    ||||| |||||| | ||||||||||||||    
T  16797637 tctgagtatggtgtatatgtgaagaaagg 16797665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 77 - 244
Target Start/End: Complemental strand, 17783434 - 17783267
Alignment:
Q  77 attacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaatct 176  Q
    |||||| ||| |||| ||||||||||| || |  |||| |||||||||||||||| |||  ||||||||||| |||||| ||||| ||||||| || |||    
T  17783434 attacacaagcctctctatggcttgaaacatgctccaagagcatggaataagaggattgacagttttcttgttcagcaagaatttttgaaatgcaagtct 17783335  T
Q  177 gaatatggtttgtatgtgaagaaagggaaaactggtaatcagatactcatttgcttatatgttgatga 244  Q
    || |||||| | ||||||| |||||| ||| | ||||||||||||||||| |||||||||||||||||    
T  17783334 gagtatggtgtctatgtgacgaaaggaaaagcaggtaatcagatactcatctgcttatatgttgatga 17783267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 1290193 - 1290320
Alignment:
Q  75 agattacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaat 174  Q
    |||||||| || ||||| ||||| ||||| |||| ||||| ||| |||||||||||  |||  | |||||||||||||||| ||||||| ||||| || |    
T  1290193 agattacacaaagctctctatggattgaaacaagcaccaagagcttggaataagagaattgacaattttcttgtgcagcaagaatttgtcaaatgcaagt 1290292  T
Q  175 ctgaatatggtttgtatgtgaagaaagg 202  Q
    ||||||||||| | ||||||||||||||    
T  1290293 ctgaatatggtgtatatgtgaagaaagg 1290320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 202
Target Start/End: Complemental strand, 198973 - 198845
Alignment:
Q  74 cagattacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaa 173  Q
    ||||||||| || ||||| ||||| ||||| || | ||||| ||| ||||| |||||  |||  || ||||||||| ||||| ||||||| ||||| ||     
T  198973 cagattacacaaagctctctatggattgaaacaggcaccaagagcttggaacaagagaattgacagctttcttgtgaagcaagaatttgttaaatgcaag 198874  T
Q  174 tctgaatatggtttgtatgtgaagaaagg 202  Q
    ||||| |||||| | ||||||||||||||    
T  198873 tctgagtatggtgtatatgtgaagaaagg 198845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 202
Target Start/End: Complemental strand, 313810 - 313682
Alignment:
Q  74 cagattacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaa 173  Q
    ||||||||| || ||||| ||||| ||||| || | ||||| ||| ||||| |||||  |||  || ||||||||| ||||| ||||||| ||||| ||     
T  313810 cagattacacaaagctctctatggattgaaacaggcaccaagagcttggaacaagagaattgacagctttcttgtgaagcaagaatttgttaaatgcaag 313711  T
Q  174 tctgaatatggtttgtatgtgaagaaagg 202  Q
    ||||| |||||| | ||||||||||||||    
T  313710 tctgagtatggtgtatatgtgaagaaagg 313682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 202
Target Start/End: Complemental strand, 30407092 - 30406964
Alignment:
Q  74 cagattacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaa 173  Q
    ||||||||| || ||||| ||||| ||||| || | ||||| ||| ||||| |||||  |||  || ||||||||| ||||| ||||||| ||||| ||     
T  30407092 cagattacacaaagctctctatggattgaaacaggcaccaagagcttggaacaagagaattgacagctttcttgtgaagcaagaatttgttaaatgcaag 30406993  T
Q  174 tctgaatatggtttgtatgtgaagaaagg 202  Q
    ||||| |||||| | ||||||||||||||    
T  30406992 tctgagtatggtgtatatgtgaagaaagg 30406964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 202
Target Start/End: Complemental strand, 43808772 - 43808644
Alignment:
Q  74 cagattacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaa 173  Q
    ||||||||| || ||||| ||||| ||||| || | ||||| ||| ||||| |||||  |||  || ||||||||| ||||| ||||||| ||||| ||     
T  43808772 cagattacacaaagctctctatggattgaaacaggcaccaagagcttggaacaagagaattgacagctttcttgtgaagcaagaatttgttaaatgcaag 43808673  T
Q  174 tctgaatatggtttgtatgtgaagaaagg 202  Q
    ||||| |||||| | ||||||||||||||    
T  43808672 tctgagtatggtgtatatgtgaagaaagg 43808644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 41948677 - 41948806
Alignment:
Q  75 agattacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaat 174  Q
    |||||||| || ||||| ||||| ||||| |||| ||||| ||| ||||| |||||  |||  |||||||||||||| ||| ||||| | ||||| || |    
T  41948677 agattacacaaagctctctatggattgaaacaagcaccaagagcttggaacaagagaattgacagttttcttgtgcaacaagaatttatcaaatgcaagt 41948776  T
Q  175 ct--gaatatggtttgtatgtgaagaaagg 202  Q
    ||  | ||||||| | ||||||||||||||    
T  41948777 ctgggtatatggtgtatatgtgaagaaagg 41948806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 31474381 - 31474317
Alignment:
Q  138 agttttcttgtgcagcaataatttgtgaaatgtaaatctgaatatggtttgtatgtgaagaaagg 202  Q
    |||||||||||||| ||| ||||||| ||||  || | |||||||||| | ||||||||||||||    
T  31474381 agttttcttgtgcatcaaaaatttgtcaaatacaagtttgaatatggtgtatatgtgaagaaagg 31474317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 75 - 244
Target Start/End: Complemental strand, 15566189 - 15566020
Alignment:
Q  75 agattacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaat 174  Q
    ||||||||||||||||| ||||| ||||||||||  |||| ||| |||||||||||| |||  |  ||||||||||||||||| ||||| ||||| |||     
T  15566189 agattacataaggctctatatggtttgaagcaagctccaagagcctggaataagaggattgacaactttcttgtgcagcaatactttgtcaaatgcaaag 15566090  T
Q  175 ctgaatatggtttgtatgtgaagaaagggaaaactggtaatcagatactcatttgcttatatgttgatga 244  Q
    ||||||||||| | |||||||| ||  | |||  | || ||  |||||||||||||||||||||||||||    
T  15566089 ctgaatatggtgtctatgtgaaaaatagcaaagttagtgatttgatactcatttgcttatatgttgatga 15566020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 17162965 - 17163092
Alignment:
Q  75 agattacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaat 174  Q
    |||| ||| ||||| || ||||| |||||||||| ||||| ||| ||||| |||||  |||  | ||||||||||| |||| ||||||| ||||| || |    
T  17162965 agatcacacaaggcactatatggtttgaagcaagcaccaagagcctggaacaagagaattgacaattttcttgtgcggcaagaatttgtcaaatgcaagt 17163064  T
Q  175 ctgaatatggtttgtatgtgaagaaagg 202  Q
    ||||||||||| | ||||||||||||||    
T  17163065 ctgaatatggtgtatatgtgaagaaagg 17163092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 202
Target Start/End: Complemental strand, 8316793 - 8316665
Alignment:
Q  74 cagattacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaa 173  Q
    ||||||||| || ||||| ||||| ||||| || | ||||| ||| ||||| |||||  |||  || ||||||||| ||||| ||||||| ||||| ||     
T  8316793 cagattacacaaagctctctatggattgaaacaggcaccaagagcttggaacaagagaattgacagctttcttgtgaagcaagaatttgttaaatgcaag 8316694  T
Q  174 tctgaatatggtttgtatgtgaagaaagg 202  Q
    ||||| |||||| | ||||||||||||||    
T  8316693 tctgagtatggtgtatatgtgaagaaagg 8316665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 202
Target Start/End: Complemental strand, 27569471 - 27569344
Alignment:
Q  75 agattacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaat 174  Q
    |||||||| || ||||| ||||| ||||| || | || || ||| ||||| |||||  |||  || ||||||||||||||| ||||||| ||||| || |    
T  27569471 agattacacaaagctctctatggattgaaacaggcacgaagagcttggaacaagagaattgacagctttcttgtgcagcaagaatttgttaaatgcaagt 27569372  T
Q  175 ctgaatatggtttgtatgtgaagaaagg 202  Q
    |||| |||||| | ||||||||||||||    
T  27569371 ctgagtatggtgtatatgtgaagaaagg 27569344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 17887854 - 17887748
Alignment:
Q  138 agttttcttgtgcagcaataatttgtgaaatgtaaatctgaatatggtttgtatgtgaagaaagggaaaactggtaatcagatactcatttgcttatatg 237  Q
    |||||||||||||||||| ||||||| ||||| || | ||| |||||| | |||||||||||||| ||   |||||||||  |||||||||   | ||||    
T  17887854 agttttcttgtgcagcaagaatttgttaaatgcaagtttgagtatggtgtatatgtgaagaaaggaaatgatggtaatcaactactcatttttctttatg 17887755  T
Q  238 ttgatga 244  Q
    |||||||    
T  17887754 ttgatga 17887748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 15566269 - 15566228
Alignment:
Q  5 taaattgtctattagatgaagttgtgtatgttacacaacctc 46  Q
    ||||| ||||| ||||||||||||||||||| ||||||||||    
T  15566269 taaatggtctactagatgaagttgtgtatgtcacacaacctc 15566228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 31358030 - 31358157
Alignment:
Q  75 agattacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaat 174  Q
    |||||||| || ||||| ||||| ||||| || | ||||| ||||||||| |||||  ||   |||||||||||||||||| ||||||| ||||| || |    
T  31358030 agattacacaaagctctctatggattgaaacaggcaccaagagcatggaacaagagaattaacagttttcttgtgcagcaagaatttgtcaaatgcaagt 31358129  T
Q  175 ctgaatatggtttgtatgtgaagaaagg 202  Q
    || | |||||| | ||||||||||||||    
T  31358130 ctaactatggtgtatatgtgaagaaagg 31358157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 202
Target Start/End: Original strand, 44150426 - 44150554
Alignment:
Q  74 cagattacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaa 173  Q
    ||||||||| || ||||| ||||| ||||| || | ||||| ||| ||||| |||||  |||  || ||||||||| ||||| ||||||| ||||| ||     
T  44150426 cagattacacaaagctctctatggattgaaacaggcaccaagagcttggaacaagagaattgacagctttcttgtgaagcaagaatttgttaaatgcaag 44150525  T
Q  174 tctgaatatggtttgtatgtgaagaaagg 202  Q
    ||||| |||||| | ||||||||||||||    
T  44150526 tctgagtatggtgtatatgtgaagaaagg 44150554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 198
Target Start/End: Complemental strand, 50629201 - 50629096
Alignment:
Q  93 tatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaatctgaatatggtttgtatg 192  Q
    ||||| ||||| || | ||||| ||| ||||| |||||  |||  |||||||||||||||||| ||||||| ||||| || ||||| |||||| | ||||    
T  50629201 tatggattgaaacaggcaccaagagcttggaacaagagaattgacagttttcttgtgcagcaagaatttgtcaaatgcaagtctgagtatggtgtatatg 50629102  T
Q  193 tgaaga 198  Q
    ||||||    
T  50629101 tgaaga 50629096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 1831399 - 1831454
Alignment:
Q  69 gtattcagattacataaggctctttatggcttgaagcaagtaccaatagcatggaa 124  Q
    ||||||||||||| ||||||||| ||||| ||||||||||  |||| |||||||||    
T  1831399 gtattcagattacgtaaggctctgtatggattgaagcaagctccaagagcatggaa 1831454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 196
Target Start/End: Complemental strand, 18218028 - 18217902
Alignment:
Q  70 tattcagattacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatg 169  Q
    |||||||||||||  ||||||| ||||| ||||| || |  |||| ||  | ||| |||||  ||| ||| ||||||||||||||| ||||||| || ||    
T  18218028 tattcagattacaagaggctctatatggattgaatcatgctccaagagtctagaacaagagaattgatagctttcttgtgcagcaagaatttgtaaagtg 18217929  T
Q  170 taaatctgaatatggtttgtatgtgaa 196  Q
     ||| ||||||||||| | ||||||||    
T  18217928 caaacctgaatatggtgtctatgtgaa 18217902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 202
Target Start/End: Complemental strand, 53355491 - 53355364
Alignment:
Q  75 agattacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaat 174  Q
    |||||||| || || || ||||| ||||| || | ||||| ||| ||||| |||||  |||  ||||||||| |||||||| ||||||| ||||| || |    
T  53355491 agattacacaaagcactctatggattgaaacaggcaccaagagcttggaacaagagaattgacagttttcttatgcagcaagaatttgtcaaatgcaagt 53355392  T
Q  175 ctgaatatggtttgtatgtgaagaaagg 202  Q
    ||||||||||| | ||||||||||||||    
T  53355391 ctgaatatggtgtatatgtgaagaaagg 53355364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 202
Target Start/End: Complemental strand, 54168633 - 54168505
Alignment:
Q  74 cagattacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaa 173  Q
    ||||||||| || ||||| ||||| ||||| || | ||||| ||| ||||| |||||  |||  || ||||||||| ||||| ||||||| ||||| ||     
T  54168633 cagattacacaaagctctctatggattgaaacaggcaccaagagcttggaacaagagaattgacagctttcttgtgaagcaagaatttgttaaatgcaag 54168534  T
Q  174 tctgaatatggtttgtatgtgaagaaagg 202  Q
    ||||| |||||| | ||||||||||||||    
T  54168533 tctgagtatggtgtatatgtgaagaaagg 54168505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 43553228 - 43553290
Alignment:
Q  140 ttttcttgtgcagcaataatttgtgaaatgtaaatctgaatatggtttgtatgtgaagaaagg 202  Q
    |||| ||||||||||| ||||||| ||||| || |||||||||||| | ||||||||||||||    
T  43553228 tttttttgtgcagcaagaatttgtcaaatgcaagtctgaatatggtgtatatgtgaagaaagg 43553290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 21849134 - 21849195
Alignment:
Q  141 tttcttgtgcagcaataatttgtgaaatgtaaatctgaatatggtttgtatgtgaagaaagg 202  Q
    |||||||| |||||| ||||||| ||||| || ||||| |||||| | ||||||||||||||    
T  21849134 tttcttgtacagcaagaatttgtcaaatgcaagtctgagtatggtgtatatgtgaagaaagg 21849195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 202
Target Start/End: Complemental strand, 43592999 - 43592870
Alignment:
Q  75 agattacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaat 174  Q
    |||||||| || ||||| ||||| ||||| || | ||||| ||| ||||| ||||   |||| |||||||||||||||||| | ||||| ||||| ||||    
T  43592999 agattacacaaagctctctatggattgaaacaggcaccaagagcttggaacaagataattggcagttttcttgtgcagcaagagtttgtcaaatgcaaat 43592900  T
Q  175 ctgaatatggtttg--tatgtgaagaaagg 202  Q
    |||| |||||| ||  ||||||||||||||    
T  43592899 ctgagtatggtgtgtatatgtgaagaaagg 43592870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 202
Target Start/End: Original strand, 26314881 - 26315009
Alignment:
Q  74 cagattacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaa 173  Q
    ||||||||| || ||||| ||||| ||||| || | ||||| ||| ||||| |||||  |||  || ||||||||| ||||| ||||||| ||||| ||     
T  26314881 cagattacacaaagctctctatggattgaaacaggcaccaagagcttggaacaagagaattgacagctttcttgtgaagcaagaatttgttaaatgcaag 26314980  T
Q  174 tctgaatatggtttgtatgtgaagaaagg 202  Q
    ||||| |||||| | ||||||||||||||    
T  26314981 tctgagtatggtgtatatgtgaagaaagg 26315009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 30646172 - 30646222
Alignment:
Q  19 gatgaagttgtgtatgttacacaacctccatgcttcaacattaaagggaag 69  Q
    ||||||||||| |||||||||||||||||| ||||||| || |||||||||    
T  30646172 gatgaagttgtttatgttacacaacctccaggcttcaaaatcaaagggaag 30646222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 242
Target Start/End: Original strand, 30646301 - 30646402
Alignment:
Q  141 tttcttgtgcagcaataatttgtgaaatgtaaatctgaatatggtttgtatgtgaagaaagggaaaactggtaatcagatactcatttgcttatatgttg 240  Q
    ||||||||||| ||| ||||| | ||||| ||| |||||||| || | |||||||||||||| ||  |  |||||  ||||| ||| |||||||||||||    
T  30646301 tttcttgtgcaacaagaatttataaaatgcaaagctgaatattgtgtatatgtgaagaaaggaaatgccagtaatatgatacccatatgcttatatgttg 30646400  T
Q  241 at 242  Q
    ||    
T  30646401 at 30646402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 202
Target Start/End: Complemental strand, 7941372 - 7941244
Alignment:
Q  74 cagattacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaa 173  Q
    ||||||||| || ||||| ||||| ||||| || | ||||| ||| ||||| |||||  |||  || ||||||||| ||||| ||||||| ||||| ||     
T  7941372 cagattacacaaagctctctatggattgaaacaggcaccaagagcttggaacaagagaattgacagctttcttgtgaagcaagaatttgttaaatgcaag 7941273  T
Q  174 tctgaatatggtttgtatgtgaagaaagg 202  Q
    ||||| |||||| | ||||||||||||||    
T  7941272 tctgagtatggtgtatatgtgaagaaagg 7941244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 202
Target Start/End: Original strand, 27760265 - 27760393
Alignment:
Q  74 cagattacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaa 173  Q
    ||||||||| || ||||| ||||| ||||| || | ||||| ||| ||||| |||||  |||  || ||||||||| ||||| ||||||| ||||| ||     
T  27760265 cagattacacaaagctctctatggattgaaacaggcaccaagagcttggaacaagagaattgacagctttcttgtgaagcaagaatttgttaaatgcaag 27760364  T
Q  174 tctgaatatggtttgtatgtgaagaaagg 202  Q
    ||||| |||||| | ||||||||||||||    
T  27760365 tctgagtatggtgtatatgtgaagaaagg 27760393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 13829328 - 13829224
Alignment:
Q  140 ttttcttgtgcagcaataatttgtgaaatgtaaatctgaatatggtttgtatgtgaagaaagggaaaactggtaatcagatactcatttgcttatatgtt 239  Q
    ||||||||| || ||| ||||||| ||||| || |||||||||||| | |||||||||||||| |     ||||||||  ||||||| || |||||||||    
T  13829328 ttttcttgtccaacaagaatttgtcaaatgcaagtctgaatatggtgtatatgtgaagaaaggaattgaaggtaatcaactactcatctgtttatatgtt 13829229  T
Q  240 gatga 244  Q
    |||||    
T  13829228 gatga 13829224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 202
Target Start/End: Original strand, 8054260 - 8054388
Alignment:
Q  74 cagattacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaa 173  Q
    ||||||||| || ||||| ||||| ||||| || | ||||| ||| ||||| |||||  |||  || ||||||||| ||||| ||||||| ||||| ||     
T  8054260 cagattacacaaagctctctatggattgaaacaggcaccaagagcttggaacaagagaattgacagctttcttgtgaagcaagaatttgttaaatgcaag 8054359  T
Q  174 tctgaatatggtttgtatgtgaagaaagg 202  Q
    ||||| |||||| | ||||||||||||||    
T  8054360 tctgagtatggtgtatatgtgaagaaagg 8054388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 35951663 - 35951599
Alignment:
Q  138 agttttcttgtgcagcaataatttgtgaaatgtaaatctgaatatggtttgtatgtgaagaaagg 202  Q
    |||||||||||||||||| ||||||| ||||| || ||||| |||||| | ||||||||||||||    
T  35951663 agttttcttgtgcagcaagaatttgtcaaatgcaagtctgagtatggtgtatatgtgaagaaagg 35951599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 202
Target Start/End: Original strand, 36673919 - 36674047
Alignment:
Q  74 cagattacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaa 173  Q
    ||||||||| || ||||| ||||| ||||| || | ||||| ||| ||||| |||||  |||  || ||||||||| ||||| ||||||| ||||| ||     
T  36673919 cagattacacaaagctctctatggattgaaacaggcaccaagagcttggaacaagagaattgacagctttcttgtgaagcaagaatttgttaaatgcaag 36674018  T
Q  174 tctgaatatggtttgtatgtgaagaaagg 202  Q
    ||||| |||||| | ||||||||||||||    
T  36674019 tctgagtatggtgtatatgtgaagaaagg 36674047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 202
Target Start/End: Complemental strand, 46154 - 46026
Alignment:
Q  74 cagattacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaa 173  Q
    ||||||||| || ||||| ||||| ||||| || | ||||| ||| ||||| |||||  |||  || |||||| || ||||| ||||||| ||||| ||     
T  46154 cagattacacaaagctctctatggattgaaacaggcaccaagagcttggaacaagagaattgacagctttcttttgaagcaagaatttgttaaatgcaag 46055  T
Q  174 tctgaatatggtttgtatgtgaagaaagg 202  Q
    ||||| |||||| | ||||||||||||||    
T  46054 tctgagtatggtgtatatgtgaagaaagg 46026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 6375 - 6502
Alignment:
Q  75 agattacataaggctctttatggcttgaagcaagtaccaatagcatggaataagaggcttggtagttttcttgtgcagcaataatttgtgaaatgtaaat 174  Q
    |||||||| || ||||| ||||| ||||| || | ||||| | | ||||| |||||  |||  || |||||||| |||||| ||||||| ||||| || |    
T  6375 agattacacaaagctctctatggattgaaacaggcaccaagaacttggaacaagagaattgacagatttcttgtacagcaagaatttgtcaaatgcaagt 6474  T
Q  175 ctgaatatggtttgtatgtgaagaaagg 202  Q
    |||| |||||| | ||||||||||||||    
T  6475 ctgagtatggtgtatatgtgaagaaagg 6502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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