View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7779_low_40 (Length: 236)
Name: NF7779_low_40
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7779_low_40 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 15393916 - 15393812
Alignment:
| Q |
132 |
tgccaagtcaaagcaaggattcaaacaaatctataagtttggattgaagccggcaaacttcatatttgagtgaacttcattttgcaagctgaactcaatt |
231 |
Q |
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| T |
15393916 |
tgccaagtcaaagcaaggattcaaacaaatctataagtttggattgaagccggcaaacttcatatttgagtgaacttcattttgcaagctgaactcaatt |
15393817 |
T |
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| Q |
232 |
ttatt |
236 |
Q |
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||||| |
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| T |
15393816 |
ttatt |
15393812 |
T |
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Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 15394040 - 15393980
Alignment:
| Q |
13 |
acttccaactactaatttctatctgatactcccttgtcctcagtgtaaccctaaccatcac |
73 |
Q |
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| T |
15394040 |
acttccaactactaatttctatctgatactcccttgtcctcagtgtaaccctaaccatcac |
15393980 |
T |
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