View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7779_low_9 (Length: 450)
Name: NF7779_low_9
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7779_low_9 |
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| [»] scaffold0204 (2 HSPs) |
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Alignment Details
Target: scaffold0204 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 17 - 440
Target Start/End: Complemental strand, 7851 - 7428
Alignment:
| Q |
17 |
cataattggaatttttattaaagaaagagttctctaacctggcatataatcatttgtattccaccactgatgagtagaggccttctccccagtctatcta |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7851 |
cataattggaatttttattaaagaaagagttctctaacctggcatataatcatttgtattccaccactgatgagtagaggccttctccccaatctatcta |
7752 |
T |
|
| Q |
117 |
cgattgcaatagaaatgaatgttgataatagaagaactcccccagtcaaggccgaggagtagagagacgcgtctttgccaaatcccatgctttgaaatag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7751 |
cgattgcaatagaaatgaatgttgataatagaagaactcccccagtcaaggccgaggagtagagagacgcgtctttgccaaatcccatgctttgaaatag |
7652 |
T |
|
| Q |
217 |
cacgggagcataaaagagaattgaatttatgccggtaagaatctggaacgctggcatgcatatagccatgaccagctctggcctgtatcgtttttcaagt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7651 |
cacgggagcataaaagagaattgaatttatgccggtaagaatctggaacgctggcatgcatatagccatgaccagctctggcctgtatcgtttttcaagt |
7552 |
T |
|
| Q |
317 |
atgttccggaaagggtgctttattgagtttgccaactcacttgcttcaaccatatcttggaactcagcatcaacatcctttgttcctctgagtttttcaa |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7551 |
atgttccggaaagggtgctttattgagtttgccaactcacttgcttcaaccatatcttggaactcagcatcaacatcctttgttcctctgagtttttcaa |
7452 |
T |
|
| Q |
417 |
ggaccttccttcctttttcctttg |
440 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
7451 |
ggaccttccttcctttttcctttg |
7428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 53 - 440
Target Start/End: Complemental strand, 20030 - 19643
Alignment:
| Q |
53 |
acctggcatataatcatttgtattccaccactgatgagtagaggccttctccccagtctatctacgattgcaatagaaatgaatgttgataatagaagaa |
152 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| || | || ||||| ||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
20030 |
acctggcatacaatcatttgtattccaccactgatgagtaagggtcgtcgccccaatctatctactgttgcaatagaaatgaatgttgatccagcaagaa |
19931 |
T |
|
| Q |
153 |
ctcccccagtcaaggccgaggagtagagagacgcgtctttgccaaatcccatgctttgaaatagcacgggagcataaaagagaattgaatttatgccggt |
252 |
Q |
| |
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|| | |||||||| || |||||||||||||| || | | ||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |
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| T |
19930 |
ctactccagtcaatgctgaggagtagagagatgcctgtctgccaaatcccatgctttgaaatagcattggagcataaaagaggattgagtttatgccggt |
19831 |
T |
|
| Q |
253 |
aagaatctggaacgctggcatgcatatagccatgaccagctctggcctgtatcgtttttcaagtatgttccggaaagggtgctttattgagtttgccaac |
352 |
Q |
| |
|
||||||||||| || |||||||| ||||||||||||| |||||| ||||||| | ||| ||| ||||| | |||||||||||||| |||||||| |
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|
| T |
19830 |
cagaatctggaatgcaggcatgcagatagccatgaccaactctggtctgtatcttcttttaaggatgttataataggggtgctttattgaatttgccaat |
19731 |
T |
|
| Q |
353 |
tcacttgcttcaaccatatcttggaactcagcatcaacatcctttgttcctctgagtttttcaaggaccttccttcctttttcctttg |
440 |
Q |
| |
|
|||| || |||| ||||||||||||||| || || || || || |||||||||| ||||||||||| |||||| |||| |||||||| |
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|
| T |
19730 |
tcacccgcatcaagcatatcttggaactccgcgtcgacctcattcgttcctctgattttttcaaggagcttcctcccttgttcctttg |
19643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 53 - 440
Target Start/End: Complemental strand, 48344526 - 48344139
Alignment:
| Q |
53 |
acctggcatataatcatttgtattccaccactgatgagtagaggccttctccccagtctatctacgattgcaatagaaatgaatgttgataatagaagaa |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| || ||||| ||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
48344526 |
acctggcatataatcatttgtattccaccactgatgagtaagggccgtcgccccaatctatctactgttgcaatagaaatgaatgttgataaggcaagaa |
48344427 |
T |
|
| Q |
153 |
ctcccccagtcaaggccgaggagtagagagacgcgtctttgccaaatcccatgctttgaaatagcacgggagcataaaagagaattgaatttatgccggt |
252 |
Q |
| |
|
|| | ||||||||||| |||||||| || || || | | ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |
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|
| T |
48344426 |
ctactccagtcaaggctgaggagtaaagcgatgcttgtctgccaaatcccatgctttgaaatagcattggagcataaaagagaattgagtttataccggt |
48344327 |
T |
|
| Q |
253 |
aagaatctggaacgctggcatgcatatagccatgaccagctctggcctgtatcgtttttcaagtatgttccggaaagggtgctttattgagtttgccaac |
352 |
Q |
| |
|
||||||||||| || |||||||| ||||||||||||| |||||| ||||||| | ||||||| ||||| | ||||||||||||||||||||||| |
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|
| T |
48344326 |
cagaatctggaatgcaggcatgcagatagccatgaccaactctggtctgtatcttctttcaaggatgttataataggggtgctttattgagtttgccaat |
48344227 |
T |
|
| Q |
353 |
tcacttgcttcaaccatatcttggaactcagcatcaacatcctttgttcctctgagtttttcaaggaccttccttcctttttcctttg |
440 |
Q |
| |
|
|||| || |||| ||||||||||||||| || || || || | ||||||||||| ||||||||||| |||||| || | |||||||| |
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|
| T |
48344226 |
tcacccgcatcaagcatatcttggaactccgcgtcgacctcatctgttcctctgattttttcaaggagcttcctcccctgttcctttg |
48344139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 53 - 440
Target Start/End: Complemental strand, 48332508 - 48332121
Alignment:
| Q |
53 |
acctggcatataatcatttgtattccaccactgatgagtagaggccttctccccagtctatctacgattgcaatagaaatgaatgttgataatagaagaa |
152 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| || | || ||||| ||||||||| ||||||||||||||||||||||| ||||| |
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| T |
48332508 |
acctggcatacaatcatttgtattccaccactgatgagtaagggtcgtcgccccaatctatctactgttgcaatagaaatgaatgttgatccagcaagaa |
48332409 |
T |
|
| Q |
153 |
ctcccccagtcaaggccgaggagtagagagacgcgtctttgccaaatcccatgctttgaaatagcacgggagcataaaagagaattgaatttatgccggt |
252 |
Q |
| |
|
|| | |||||||| || |||||||||||||| || | | ||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |
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|
| T |
48332408 |
ctactccagtcaatgctgaggagtagagagatgcctgtctgccaaatcccatgctttgaaatagcattggagcataaaagaggattgagtttatgccggt |
48332309 |
T |
|
| Q |
253 |
aagaatctggaacgctggcatgcatatagccatgaccagctctggcctgtatcgtttttcaagtatgttccggaaagggtgctttattgagtttgccaac |
352 |
Q |
| |
|
||||||||||| || |||||||| ||||||||||||| |||||| ||||||| | ||| ||| ||||| | |||||||||||||| |||||||| |
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|
| T |
48332308 |
cagaatctggaatgcaggcatgcagatagccatgaccaactctggtctgtatcttcttttaaggatgttataataggggtgctttattgaatttgccaat |
48332209 |
T |
|
| Q |
353 |
tcacttgcttcaaccatatcttggaactcagcatcaacatcctttgttcctctgagtttttcaaggaccttccttcctttttcctttg |
440 |
Q |
| |
|
|||| || |||| ||||||||||||||| || || || || || |||||||||| ||||||||||| |||||| |||| |||||||| |
|
|
| T |
48332208 |
tcacccgcatcaagcatatcttggaactccgcgtcgacctcattcgttcctctgattttttcaaggagcttcctcccttgttcctttg |
48332121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 53 - 435
Target Start/End: Original strand, 36294006 - 36294388
Alignment:
| Q |
53 |
acctggcatataatcatttgtattccaccactgatgagtagaggccttctccccagtctatctacgattgcaatagaaatgaatgttgataatagaagaa |
152 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| || ||| || || ||||| |||| || |||| || |||||||||||||| | ||||| |
|
|
| T |
36294006 |
acctgacatatgatcatttgtattccaccactgataagaagaactctccttcccagcttatcaactgttgcgatggaaatgaatgttgagcaagcaagaa |
36294105 |
T |
|
| Q |
153 |
ctcccccagtcaaggccgaggagtagagagacgcgtctttgccaaatcccatgctttgaaatagcacgggagcataaaagagaattgaatttatgccggt |
252 |
Q |
| |
|
| || ||||| || |||||||||||||| || || ||| |||||||||||||||||||| ||||| |||||||| |||||||| ||||| ||||| || |
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|
| T |
36294106 |
cgccaccagttaaagccgaggagtagagtgaagcatctccaccaaatcccatgctttgaaacagcaccggagcatagaagagaatggaattaatgccagt |
36294205 |
T |
|
| Q |
253 |
aagaatctggaacgctggcatgcatatagccatgaccagctctggcctgtatcgtttttcaagtatgttccggaaagggtgctttattgagtttgccaac |
352 |
Q |
| |
|
| ||||| | | ||||||| || ||||| |||| ||||||||| || | | ||| ||||||||| || || |||||||||||||||||||||||| |
|
|
| T |
36294206 |
caagatctgtgaagttggcatgacaattgccatcaccaactctggcctataccttctttgaagtatgttacgaaacgggtgctttattgagtttgccaac |
36294305 |
T |
|
| Q |
353 |
tcacttgcttcaaccatatcttggaactcagcatcaacatcctttgttcctctgagtttttcaaggaccttccttcctttttc |
435 |
Q |
| |
|
| ||||| ||||||||||||| ||||| ||||||||||| |||||||| | ||| || |||| |||||||||| |||| |
|
|
| T |
36294306 |
ttgcttgcatcaaccatatcttcaaactctgcatcaacatcgccagttcctctaattttctctaggagcttccttcctctttc |
36294388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 53 - 435
Target Start/End: Original strand, 41414374 - 41414756
Alignment:
| Q |
53 |
acctggcatataatcatttgtattccaccactgatgagtagaggccttctccccagtctatctacgattgcaatagaaatgaatgttgataatagaagaa |
152 |
Q |
| |
|
||||| ||||| |||||||||||||| |||||||| || ||| || || || || |||| || ||||||| ||||| |||||||| | ||||| |
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|
| T |
41414374 |
acctgacatatgatcatttgtattcccccactgataagaagaattctccttcctagcttatcaactgttgcaatggaaataaatgttgagcaagcaagaa |
41414473 |
T |
|
| Q |
153 |
ctcccccagtcaaggccgaggagtagagagacgcgtctttgccaaatcccatgctttgaaatagcacgggagcataaaagagaattgaatttatgccggt |
252 |
Q |
| |
|
| || || ||||| |||||||||||||| || |||||| ||||| |||||||||||||| || || |||||||| |||||||| | ||||||||| || |
|
|
| T |
41414474 |
cgccacccgtcaaagccgaggagtagagtgaagcgtctcccccaaagcccatgctttgaaacagtactggagcatagaagagaatggcatttatgccagt |
41414573 |
T |
|
| Q |
253 |
aagaatctggaacgctggcatgcatatagccatgaccagctctggcctgtatcgtttttcaagtatgttccggaaagggtgctttattgagtttgccaac |
352 |
Q |
| |
|
| || || | | ||||||| || ||||| |||| ||||||||| || | ||| ||||||||| || || ||||||||||||||||| ||||| |
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|
| T |
41414574 |
taagatttgtgaagttggcatgacaattgccatcaccaactctggcctatactttcttttaagtatgttacgaaatgggtgctttattgagttcgccaat |
41414673 |
T |
|
| Q |
353 |
tcacttgcttcaaccatatcttggaactcagcatcaacatcctttgttcctctgagtttttcaaggaccttccttcctttttc |
435 |
Q |
| |
|
|| ||||||||||||||||||| | ||| ||||||||||| | |||||||| | ||| || |||| ||| ||||||||||| |
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|
| T |
41414674 |
tcgcttgcttcaaccatatcttcaagctctgcatcaacatcgctagttcctctaattttctctaggagctttcttcctttttc |
41414756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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