View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7780_high_2 (Length: 629)
Name: NF7780_high_2
Description: NF7780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7780_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 8 - 614
Target Start/End: Complemental strand, 43818060 - 43817454
Alignment:
| Q |
8 |
cgaagaatattattcacctgagggtttggtaaccgtctctcccaatctacctttaaggtagatcaaacccnnnnnnntatcatgttgatgaaaccaaaac |
107 |
Q |
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| T |
43818060 |
cgaagaaaattattcacctgagggtttggtaaccgtctctcccaatctacctttaaggtagatcaaacccaaaaaaatatcatgttgatgaaaccaaaac |
43817961 |
T |
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| Q |
108 |
gaagtaacaatccctttattgaatccaaataatcatatcttagttttcattatttctcatttctccaacatagaaaaaagaaacaccaatcatacatttc |
207 |
Q |
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| T |
43817960 |
gaagtaacaatccctttattgaatccaaataatcatatcttagttttcattatttctcatttctccaacatagaaaaaagaaacaccaatcattcatttc |
43817861 |
T |
|
| Q |
208 |
ctaatctgatttgttttcattaaaaacgtgacgattagggaattgaaattgaaatagatacatagaagaaatgaaaaatttccacattttatgtggaatc |
307 |
Q |
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| T |
43817860 |
ctaatctgatttgttttcattaaaaacgtgacgattagggaattgaaattgaaatagatacatagaagaaatgaaaaatttccacattttatgtggaatc |
43817761 |
T |
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| Q |
308 |
gtaatatcctcgttgttatcatatgtgacatgctttgacggtgcaatacacgaagctggtctaacatgcgggacttatcaataccctcatgatggtaaca |
407 |
Q |
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| T |
43817760 |
gtaatatcctcgttgttatcatatgtgacatgctttgacggtgcaatacacgaagctggtctaacatgcgggacttatcaataccctcatgatggtaaca |
43817661 |
T |
|
| Q |
408 |
atactaacaatcacaagttgaagcaaaacttgatggttgtaatggacgcggtctcatttcaggtgaaacagcaggggtggggagcacaaacattagttgg |
507 |
Q |
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| T |
43817660 |
atactaacaatcacaagttgaagcaaaacttgatggttgtaatggacgcggtctcatttcaggtgaaacagcaggggtggggagcacaaacattagttgg |
43817561 |
T |
|
| Q |
508 |
taattggcatccaatgtatgcattaggccaatgtcaacgcgatcttgatccgacacaatgcaacatttgtttcacccaagcaagacaattgttatcgagg |
607 |
Q |
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| T |
43817560 |
taattggcatccaatgtatgcattaggccaatgtcaacgcgatcttgatccgacacaatgcaacatttgtttcacccaagcaagacaattgttatcgagg |
43817461 |
T |
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| Q |
608 |
tgcatac |
614 |
Q |
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| T |
43817460 |
tgcatac |
43817454 |
T |
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