View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7780_low_1 (Length: 761)
Name: NF7780_low_1
Description: NF7780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7780_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 6852300 - 6852657
Alignment:
| Q |
1 |
ccaccgttgccctatcctcaagccgccgcgttgtgagtcattccggcaaccgcaccagaagcttgtttatccagtgactcagtaagctttctctgttgac |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6852300 |
ccacccttgccctatcctcaagccgccgcgttgtgagtcattccggcaaccgcaccagaagcttgtttatccagtgactcagtaagctttctctgtttac |
6852399 |
T |
|
| Q |
101 |
gcctctgctttttctcattatctaatcatgttctgttcagttcacaccttactaattttgtgttgttgaataatcaattgtgttttcttgttatttaatg |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6852400 |
gcctctgcttttcctcattatctaatcatgttctgttcagttcacaccttactaattttatgttgttgaataatcaattgtgttttcttgttatttaatg |
6852499 |
T |
|
| Q |
201 |
aannnnnnncagtatgttgttgctgctattagaaaattctttatgctaatccgtttgttagggtaagagacgacttacttttcttttaagttactggcag |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6852500 |
aa-ttttttcagtatgttgttgctgctattagaaaattctttatgctaatccgtttgttagggtaagagacgacttacttttcttttaagttactggcag |
6852598 |
T |
|
| Q |
301 |
tcttacacactataacatgtttttttaaataaattgtgatttaattattattctatttc |
359 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6852599 |
tcttgcacactataacatgtttttttaaataaattgtgatttaattattattctatttc |
6852657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 428 - 693
Target Start/End: Original strand, 6852726 - 6852991
Alignment:
| Q |
428 |
gtatttagttctgcaaattcaaaatttatagttttagtctataatgttagcttattggttcacatgagagattatattgggcacatatgatgttagagat |
527 |
Q |
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| T |
6852726 |
gtatttagttctgctaattcaaaatttatagttttagtctataatgttagcttattggttcacatgagagattatattgggcacatatgatgttagagat |
6852825 |
T |
|
| Q |
528 |
aaacaaccattttttaatttgcagggactaaaaacttatggggactaacatggactaaaatcatatttaaactttttctaaaatatcaaaatatagactt |
627 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6852826 |
aaacaaccattttttaatttgcagggactaaaaacttatggggactaacagggactaaaatcatatttaaactttttctaaaatatcaaaatatagactt |
6852925 |
T |
|
| Q |
628 |
agccctccaaaactcctcctaatcagacccttaatgttgttagatatcttgtgcttggttagattc |
693 |
Q |
| |
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||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6852926 |
agcgctccaaaactcctccgaatcagacccttaatgttgttagatatcttgtgtttggttagattc |
6852991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 608 - 639
Target Start/End: Original strand, 37152046 - 37152077
Alignment:
| Q |
608 |
aaatatcaaaatatagacttagccctccaaaa |
639 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
37152046 |
aaatatcaaaatatagacttagccctccaaaa |
37152077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 610 - 640
Target Start/End: Complemental strand, 24278026 - 24277996
Alignment:
| Q |
610 |
atatcaaaatatagacttagccctccaaaac |
640 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
24278026 |
atatcaaaatatagacttagccctccaaaac |
24277996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 640
Target Start/End: Complemental strand, 26178435 - 26178402
Alignment:
| Q |
607 |
aaaatatcaaaatatagacttagccctccaaaac |
640 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| |
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| T |
26178435 |
aaaatatcaaaatataaacttagccctccaaaac |
26178402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 640
Target Start/End: Complemental strand, 19177205 - 19177172
Alignment:
| Q |
607 |
aaaatatcaaaatatagacttagccctccaaaac |
640 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| |
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| T |
19177205 |
aaaatatcaacatatagacttagccctccaaaac |
19177172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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