View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7780_low_10 (Length: 333)
Name: NF7780_low_10
Description: NF7780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7780_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 9571904 - 9572190
Alignment:
| Q |
1 |
atcaatgaacagctattttcttcttggacatccatttgcttcgggtggcttccaatgcctccaacttcattctagtgagctcctcaatccaatgctgata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9571904 |
atcaatgaacagctattttcttcttggacatccatttgcttcgggtggcttccaatgcctccaacttcattctagtgagctcctcaatccaatgctgata |
9572003 |
T |
|
| Q |
101 |
ttgtgactcaatttcatcaagttcaagctttagctcatgatcattatccttttcggttgaagacacagaagaacaacaactacttatcaagctcagaacg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9572004 |
ttgtgactcaatttcatcaagttcaagctttagctcatgatcattatccttttcggttgaagacacagaagaacaacaactacttatcaagctcagaacg |
9572103 |
T |
|
| Q |
201 |
tttgatgattctgagatcacattgccttccccaacactgtaatctgcggcctgcaatttgcaatcttcgaaatacctgttcccaact |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9572104 |
tttgatgattctgagatcacattgccttccccaacattgtaatctgcggcctgcaatttgcaatcttcgaaatacctgttcccaact |
9572190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University