View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7780_low_11 (Length: 326)
Name: NF7780_low_11
Description: NF7780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7780_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 14 - 306
Target Start/End: Complemental strand, 2303509 - 2303217
Alignment:
| Q |
14 |
tactacacattgccattgttaatttgatttatatgaaattagatgttcgattgacttatttaagcttatctactggcagaaatatttacaagactatttg |
113 |
Q |
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| T |
2303509 |
tactacacattgtcattgttaatttgatttatatgaaattaaatgttcgattgacttatttaagcttatctactggcagaaatatttacaagaatatttg |
2303410 |
T |
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| Q |
114 |
acacagcttatagaaatatgttataggaattatttatatataagtacttagatgataagctataagtttttaaataagctattcatccacataggatctg |
213 |
Q |
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| T |
2303409 |
acacagcttatagaaatatgttataggaattgcttatagataagtacttagatgataagctataagtttttaaataagctattcatccacataggatctg |
2303310 |
T |
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| Q |
214 |
agagtgctttgtgaggccttcactcttcagagctgcaacatgtgctttgtgtagtctgttcataggttgtgaatcctgagcagtaccttgcat |
306 |
Q |
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| T |
2303309 |
agagtgctttgtgaggccttcactcttcagagctgcaacatgtgctttgtgtagtctgttcataggttgtgaatcctgagcagtaccttgcat |
2303217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 2306928 - 2306842
Alignment:
| Q |
14 |
tactacacattgccattgttaatttgatttatatgaaattagatgttcgattgacttatttaagcttatctactggcagaaatattt |
100 |
Q |
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| T |
2306928 |
tactacacattgactttgttaattcgatttatatgaagttggatgttcgattgacttatttgagtctatctactagcataaatattt |
2306842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 11296924 - 11296975
Alignment:
| Q |
62 |
gattgacttatttaagcttatctactggcagaaatatttacaagactatttg |
113 |
Q |
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|||||||||||||||||||||||| |||| ||| |||||| |||||||||| |
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| T |
11296924 |
gattgacttatttaagcttatctaggggcaaaaacatttacgagactatttg |
11296975 |
T |
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