View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7780_low_13 (Length: 317)
Name: NF7780_low_13
Description: NF7780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7780_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 24 - 181
Target Start/End: Complemental strand, 39943415 - 39943258
Alignment:
| Q |
24 |
gcagggaaccaatctccttttttagcaccaatgagaggccacatgacaccccaagaaagaactccaccaatcaacagcgaaatattgattatatatggac |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39943415 |
gcagggaaccaatctccttttttagcaccaatgagaggccacatgacaccccaagaaagaactccaccaatcaacagcgaaatattgattatatatggac |
39943316 |
T |
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| Q |
124 |
atatcatcccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39943315 |
atatcatcccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
39943258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 291
Target Start/End: Complemental strand, 39943192 - 39943148
Alignment:
| Q |
247 |
cagcaatattttctaaaaagttgctaactcatcatcctaccacca |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39943192 |
cagcaatattttctaaaaagttgctaactcatcatcctatcacca |
39943148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 26 - 181
Target Start/End: Original strand, 28749477 - 28749632
Alignment:
| Q |
26 |
agggaaccaatctccttttttagcaccaatgagaggccacatgacaccccaagaaagaactccaccaatcaacagcgaaatattgattatatatggacat |
125 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28749477 |
agggaaccaatctccttttttagaaccaatgagaggccacatgacagcccatgaaagaattccaccaatcaacagcgaaatattgattatatatggacat |
28749576 |
T |
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| Q |
126 |
atcatcccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28749577 |
atcatcccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
28749632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 24 - 181
Target Start/End: Original strand, 28739533 - 28739690
Alignment:
| Q |
24 |
gcagggaaccaatctccttttttagcaccaatgagaggccacatgacaccccaagaaagaactccaccaatcaacagcgaaatattgattatatatggac |
123 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28739533 |
gcagagaaccaatctccttttttagaaccaatgagaggccacatgacagcccatgaaagaattccaccaatcaacagcgaaatattgattatatatggac |
28739632 |
T |
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| Q |
124 |
atatcatcccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28739633 |
atatcatcccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
28739690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 26 - 181
Target Start/End: Original strand, 28753490 - 28753645
Alignment:
| Q |
26 |
agggaaccaatctccttttttagcaccaatgagaggccacatgacaccccaagaaagaactccaccaatcaacagcgaaatattgattatatatggacat |
125 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28753490 |
agggaaccaatctccttttttagaaccaatgagaggccacatgacagcccatgaaagaattccaccaatcaacagcgaaatattgattatatatggacat |
28753589 |
T |
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| Q |
126 |
atcatcccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
181 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28753590 |
atcatcccaacccccacataggtagcagaaaaatcaaagtaaaacctgttatgtac |
28753645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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