View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7780_low_15 (Length: 311)
Name: NF7780_low_15
Description: NF7780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7780_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 293
Target Start/End: Original strand, 13393808 - 13394085
Alignment:
| Q |
16 |
acatcacccaacaaagagaaagaagcaatagaaaacctaggagctgattcatttcttataagtcatgaccaagataaaatgcaggtacaaatacataatc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13393808 |
acatcacccaacaaagagaaagaagcaatagaaaacctaggagctgattcatttcttataagtcatgaccaagataaaatgcaggtacaaatacataatc |
13393907 |
T |
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| Q |
116 |
aaagttagaataatattcataattggaaatggtaattgattaattaataaatgtcgatgattttataggctgcgatgggtactttggatggcatcatcga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13393908 |
aaagttagaataatattcataattggaaatggtaattgattaattaataaatgtcgatgattttataggctgcgatgggtactttggatggcatcatcga |
13394007 |
T |
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| Q |
216 |
tacagtttcagcggatcatcctctcttacctctagttggtttattaaaatatcacggaaaacttgtaatggtcggtgc |
293 |
Q |
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| T |
13394008 |
tacagtttcagcggatcatcctctcttacctctagttggtttattaaaatatcacggaaaacttgtaatggtcggtgc |
13394085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 13389401 - 13389491
Alignment:
| Q |
16 |
acatcacccaacaaagagaaagaagcaatagaaaacctaggagctgattcatttcttataagtcatgaccaagataaaatgcaggtacaaa |
106 |
Q |
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| T |
13389401 |
acatcacccaacaaagagaaagaagcaatagaacacttaggagccgattcatttctgataagtcgtgaccaagagaaaatgcaggtacaaa |
13389491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 176 - 292
Target Start/End: Original strand, 13389570 - 13389686
Alignment:
| Q |
176 |
ttttataggctgcgatgggtactttggatggcatcatcgatacagtttcagcggatcatcctctcttacctctagttggtttattaaaatatcacggaaa |
275 |
Q |
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|||||||| |||| |||||||||||||||| |||||||||||||||||||| |||||||| ||||||| ||| |||| ||||| || | ||| ||||| |
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| T |
13389570 |
ttttatagtctgcattgggtactttggatggtatcatcgatacagtttcagcaaatcatcctatcttacccctaattggattattgaagtctcatggaaa |
13389669 |
T |
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| Q |
276 |
acttgtaatggtcggtg |
292 |
Q |
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|||||||||||| |||| |
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| T |
13389670 |
acttgtaatggttggtg |
13389686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 13385591 - 13385670
Alignment:
| Q |
27 |
caaagagaaagaagcaatagaaaacctaggagctgattcatttcttataagtcatgaccaagataaaatgcaggtacaaa |
106 |
Q |
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| T |
13385591 |
caaagaaaaggaagcaaaagaacacttaggagctgattcatttctgataagtcgtgaccaagataaaatgcaggtacaaa |
13385670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 293
Target Start/End: Complemental strand, 13453579 - 13453467
Alignment:
| Q |
181 |
taggctgcgatgggtactttggatggcatcatcgatacagtttcagcggatcatcctctcttacctctagttggtttattaaaatatcacggaaaacttg |
280 |
Q |
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|||||||| | || |||||||||||| || ||||| |||||||||||||||||||| || |||||||| |||||||| | || | ||| ||||| |||| |
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| T |
13453579 |
taggctgcaacggctactttggatggtattatcgacacagtttcagcggatcatccgctattacctctgattggtttactcaagtctcatggaaagcttg |
13453480 |
T |
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| Q |
281 |
taatggtcggtgc |
293 |
Q |
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||||||| ||||| |
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| T |
13453479 |
taatggttggtgc |
13453467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 292
Target Start/End: Original strand, 13385744 - 13385860
Alignment:
| Q |
176 |
ttttataggctgcgatgggtactttggatggcatcatcgatacagtttcagcggatcatcctctcttacctctagttggtttattaaaatatcacggaaa |
275 |
Q |
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|||||||| |||| |||||||||||||||| ||||| ||||| |||||||| |||||||| |||| || ||| |||| ||| | || | ||| ||||| |
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| T |
13385744 |
ttttatagtctgcactgggtactttggatggtatcattgataccgtttcagcaaatcatcctgtcttgccactacttggattactgaagtctcatggaaa |
13385843 |
T |
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| Q |
276 |
acttgtaatggtcggtg |
292 |
Q |
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|||||||||||| |||| |
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| T |
13385844 |
acttgtaatggttggtg |
13385860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 13413001 - 13412939
Alignment:
| Q |
16 |
acatcacccaacaaagagaaagaagcaatagaaaacctaggagctgattcatttcttataagt |
78 |
Q |
| |
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||||| || |||||||| || |||||||||||| || ||||||||||||||||||| |||||| |
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| T |
13413001 |
acatcgcctaacaaagaaaaggaagcaatagaacacttaggagctgattcatttctgataagt |
13412939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 292
Target Start/End: Complemental strand, 13426065 - 13425953
Alignment:
| Q |
180 |
ataggctgcgatgggtactttggatggcatcatcgatacagtttcagcggatcatcctctcttacctctagttggtttattaaaatatcacggaaaactt |
279 |
Q |
| |
|
||||||||| |||||||||||| |||| || ||||| || ||||| || ||||||| ||||||| | |||||||||| |||| | | ||||||||| |
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| T |
13426065 |
ataggctgcaatgggtactttgaatggtattatcgacactgtttcggcaagtcatcctatcttaccattgattggtttattgaaatctaatggaaaactt |
13425966 |
T |
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| Q |
280 |
gtaatggtcggtg |
292 |
Q |
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|||||||| |||| |
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| T |
13425965 |
gtaatggttggtg |
13425953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 292
Target Start/End: Complemental strand, 13419180 - 13419063
Alignment:
| Q |
175 |
attttataggctgcgatgggtactttggatggcatcatcgatacagtttcagcggatcatcctctcttacctctagttggtttattaaaatatcacggaa |
274 |
Q |
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|||| |||| |||| |||||||||||| |||| || || || |||||||| ||| | |||||| | ||||| | |||| |||||| |||| | | |||| |
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| T |
13419180 |
atttcatagactgcaatgggtactttgaatggtattattgacacagtttcggcgaaccatcctattttaccattggttgctttattgaaatctaatggaa |
13419081 |
T |
|
| Q |
275 |
aacttgtaatggtcggtg |
292 |
Q |
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||||||||||||| |||| |
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| T |
13419080 |
aacttgtaatggttggtg |
13419063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 13412814 - 13412762
Alignment:
| Q |
193 |
ggtactttggatggcatcatcgatacagtttcagcggatcatcctctcttacc |
245 |
Q |
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|||||||||||||| || || || ||||||||||| | ||||||||||||||| |
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| T |
13412814 |
ggtactttggatggtattattgacacagtttcagctgttcatcctctcttacc |
13412762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 294
Target Start/End: Complemental strand, 47600997 - 47600881
Alignment:
| Q |
178 |
ttataggctgcgatgggtactttggatggcatcatcgatacagtttcagcggatcatcctctcttacctctagttggtttattaaaatatcacggaaaac |
277 |
Q |
| |
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||||||||||| || |||||||||||| ||||| || ||||||||||| || |||||||||| ||||||| |||| ||| | || | ||| ||||||| |
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| T |
47600997 |
ttataggctgcagtgaatactttggatggtatcattgacacagtttcagctgaacatcctctctcacctctaattggattactgaagtctcatggaaaac |
47600898 |
T |
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| Q |
278 |
ttgtaatggtcggtgct |
294 |
Q |
| |
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|||||||||| |||||| |
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| T |
47600897 |
ttgtaatggttggtgct |
47600881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 47601168 - 47601074
Alignment:
| Q |
16 |
acatcacccaacaaagagaaagaagcaatagaaaacctaggagctgattcatttcttataagtcatgaccaagataaaatgcaggtacaaataca |
110 |
Q |
| |
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|||||||| |||||||| |||||||||| |||| | |||||||||| |||||| | ||||||| |||||||||||| ||||| ||| ||||||| |
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| T |
47601168 |
acatcacctaacaaagaaaaagaagcaagagaatgcttaggagctgactcatttttgataagtcgtgaccaagataagatgcaagtataaataca |
47601074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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