View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7780_low_18 (Length: 266)
Name: NF7780_low_18
Description: NF7780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7780_low_18 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 27 - 266
Target Start/End: Complemental strand, 43818296 - 43818057
Alignment:
| Q |
27 |
catagaccaacaacgaaatggtccaaagtagtattgtccccaaataaatgtgttaaacatgaaagaaaacatagtaactactttataccggtaacccaaa |
126 |
Q |
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| T |
43818296 |
catagaccaacaacgaaatggtccaaagtagtattgtccccaaataaatgtgttaaacatgaaagaaaacatagtaactactttataccggtaacccaaa |
43818197 |
T |
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| Q |
127 |
taaggaataaaataaaatctaagccagttcattaattccaccattaataatcatattctctaatgatcgtttttctctcttatctaactgcaaataagaa |
226 |
Q |
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| T |
43818196 |
taaggaataaaataaaatctaagccagttcattaattccaccattaataatcatattctctaatgatcgtttttctctcttatctaactgcaaataagaa |
43818097 |
T |
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| Q |
227 |
gaatctaaaaagatattatttatgttataaaattaacgaa |
266 |
Q |
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| T |
43818096 |
gaatctaaaaagatattatttatgttataaaattagcgaa |
43818057 |
T |
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