View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7780_low_21 (Length: 241)
Name: NF7780_low_21
Description: NF7780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7780_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 32505561 - 32505345
Alignment:
| Q |
18 |
aaacaaatgtgtaatcatatagaaaacaatgtaaatggaactgttgattttcttttatcttatcttaatattataaaagtaaaccagtc-tggaagcaaa |
116 |
Q |
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| T |
32505561 |
aaacaaatgtgtaatcatatagaaaaaaatgtaaatggaattgttgattttcttttatcttatcttaatattataaaagtaaactagtcatgcaagcaaa |
32505462 |
T |
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| Q |
117 |
atctgaagnnnnnnnnccctaaccaggttcttccccattttaactagcaattcatatggagggaaaacctaaggtttgaaatgagaaaattactttaata |
216 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||||||| ||| ||| |||| |||||||||||||||||||||||||||| |
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| T |
32505461 |
atctgaa-----aaaaccctaaccaagttcttccccattttaactagcaattcatatgaaggaaaaccctagggtttgaaatgagaaaattactttaata |
32505367 |
T |
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| Q |
217 |
tctctcagatcatgtgctttgg |
238 |
Q |
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|| ||||||||||||||||||| |
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| T |
32505366 |
tccctcagatcatgtgctttgg |
32505345 |
T |
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