View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7780_low_22 (Length: 240)
Name: NF7780_low_22
Description: NF7780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7780_low_22 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 40899794 - 40900016
Alignment:
| Q |
18 |
attccaatgtttagatatttatatataattaggctgagtctatgtttctctaattcaatttgcttccttgcttttgcaggtcttggtgctactatcaatg |
117 |
Q |
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| T |
40899794 |
attccaatgtttagatatttatatataattaggctgagtctatgtttctctaattcaatttgcttccatgcttttacaggtcttggtgctactatcaatg |
40899893 |
T |
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| Q |
118 |
tagctaaaccaaaacccggttcatctgttgctatctttggccttggagctgttggccttgcggtatgttactcttataccttgagtgtgcatgcacgtgt |
217 |
Q |
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| T |
40899894 |
tagctaaaccaaaacccggttcatctgttgctatctttggccttggagctgttgggcttgcggtatgttactcttataccttgagtgtgcatgcacgtgt |
40899993 |
T |
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| Q |
218 |
ttgtgcgtgttgcaaattgcaat |
240 |
Q |
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| T |
40899994 |
ttgtgcgtgttgcaaattgcaat |
40900016 |
T |
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Target: chr3; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 40904360 - 40904548
Alignment:
| Q |
18 |
attccaatgtttagatatttatatataattaggctgagtctatgtttctctaattcaatttgcttccttgcttttgcaggtcttggtgctactatcaatg |
117 |
Q |
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| T |
40904360 |
attccagtgttttgatattaacatataactaggatgagtctatgttttcgtaattcaatttgcttccatacttctataggtcttggtgctactatcaatg |
40904459 |
T |
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| Q |
118 |
tagctaaaccaaaacccggttcatctgttgctatctttggccttggagctgttggccttgcggtatgttactcttataccttgagtgtg |
206 |
Q |
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| T |
40904460 |
ttgctaaaccaaaacccggttcttctgtcgctatctttggacttggagctgttggccttgctgtatgttactctcatatcttgtgtgtg |
40904548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 30 - 206
Target Start/End: Original strand, 40881163 - 40881337
Alignment:
| Q |
30 |
agatatttatatataattaggctgagtctatgtttctctaattcaatttgcttccttgcttttgcaggtcttggtgctactatcaatgtagctaaaccaa |
129 |
Q |
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||||||| |||||||| |||| ||||| |||| || |||||||||||||| | | || | || ||||||||||||||| |||||||| |||||||| | |
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| T |
40881163 |
agatattaatatataactaggttgagtatatgatttcctaattcaatttgcattcatggtctt--aggtcttggtgctaccatcaatgttgctaaaccga |
40881260 |
T |
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| Q |
130 |
aacccggttcatctgttgctatctttggccttggagctgttggccttgcggtatgttactcttataccttgagtgtg |
206 |
Q |
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| T |
40881261 |
aacccggttcttctgttgctatctttggacttggagctgttggccttgctgtatgttactttcataccatgagtgtg |
40881337 |
T |
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