View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7780_low_23 (Length: 230)
Name: NF7780_low_23
Description: NF7780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7780_low_23 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 40900403 - 40900174
Alignment:
| Q |
1 |
ttcatagaatcgtgctttaaaattcaaaattgaaaacagaaatataataaactactatatactaaattgtcaatgaactaacttgttgaacaggtttgtt |
100 |
Q |
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| T |
40900403 |
ttcatagaatcatgctttaaaattcaaaattgaaaacagaaatataataaactactatatactaaattgtcaatgaactaacttgttgaacaggtttgtt |
40900304 |
T |
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| Q |
101 |
atgatctttcgggtttacaaactcattcaccccaaacttcttagctgtcaacaagnnnnnnntaagaaatgccatcaataaaagaaatagtcattgaatt |
200 |
Q |
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| T |
40900303 |
atgatctttcgggtttacaaactcatttaccccaaacttcttagctgtcaacaagaaaaaaataagaaatgccatcaataaaagaaatagtcattgaatt |
40900204 |
T |
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| Q |
201 |
catgttgaccagaatctacaagcatttgat |
230 |
Q |
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| T |
40900203 |
catgttaaccagaatctacaagcatttgat |
40900174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 40904866 - 40904739
Alignment:
| Q |
73 |
atgaactaacttgttgaacaggtttgttatgatctttcgggtttacaaactcattcaccccaaacttcttagctgtcaacaagnnnnnnntaagaaatgc |
172 |
Q |
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| T |
40904866 |
atgaactaacttgttgaacaggtttgtcatgatctttagggtttacaaactcattcaccccaaacttcttagctgccaacaagaaaaaaaaaagaaatgt |
40904767 |
T |
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| Q |
173 |
catcaataaaagaaatagtcattgaatt |
200 |
Q |
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| T |
40904766 |
catcaataaaagaaacagtcattgaatt |
40904739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 40881638 - 40881565
Alignment:
| Q |
74 |
tgaactaacttgttgaacaggtttgttatgatctttcgggtttacaaactcattcaccccaaacttcttagctg |
147 |
Q |
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| T |
40881638 |
tgaactaacctgttgtacaggtttgtcatgatcttttgggttcacaaactcatttaccccaaacttcttagctg |
40881565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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