View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7780_low_3 (Length: 558)
Name: NF7780_low_3
Description: NF7780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7780_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 128; Significance: 7e-66; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 382 - 542
Target Start/End: Original strand, 30682767 - 30682931
Alignment:
| Q |
382 |
atttggtgtgaatcatatgaccgaaatccaaaacaatgcatatacatat----ataggtgtgacttcggtgtcattggaaggagatgataaggatcgtat |
477 |
Q |
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| T |
30682767 |
atttggtgtgaatcatatgaccgaaatccaaaccaatgcatatatatatatatataggtgtaacttcggtgtcattggaaggagatgataaggatcgtgt |
30682866 |
T |
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| Q |
478 |
atgtgtgaccggtgataatgtggacatagtttgcttagcaaatcagctgaagaagaagttcaaca |
542 |
Q |
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| T |
30682867 |
atgtgtgaccggtgataatgtggacatagtttgcttagcaaaccagctgaagaagaagttcaaca |
30682931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 61 - 182
Target Start/End: Original strand, 30682125 - 30682246
Alignment:
| Q |
61 |
cttagtaagctatatgtgaaatgacaaatacagcaaaaaatagttataaagttgtcaatggacagtgagaaatgcagaaccaaagccctcaaaactgctg |
160 |
Q |
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| T |
30682125 |
cttagtaagctatatgtgaaatgacaaatacagcaaaaaatagttataaagttgtcaatggacaatgagaaatgcagaaccaaagccctcaaaactgctg |
30682224 |
T |
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| Q |
161 |
ctgaggtcaaaggtatgccaat |
182 |
Q |
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| T |
30682225 |
ctgaggtcaaaggtatgccaat |
30682246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 30715443 - 30715329
Alignment:
| Q |
61 |
cttagtaagctatatgtgaaatgacaaatacagcaaaaaatagttataaagttgtcaatggacagtgagaaatgcagaaccaaagccctcaaaactgctg |
160 |
Q |
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| T |
30715443 |
cttaataagttatatgtgaaatggcaaatacagcaaaaaatggttataaagttgcaaatggactgcgataaatgcagaaacaaagccctcaaaactgctg |
30715344 |
T |
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| Q |
161 |
ctgaggtcaaaggta |
175 |
Q |
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| T |
30715343 |
ctgaggtccaaggta |
30715329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 30688633 - 30688537
Alignment:
| Q |
79 |
aaatgacaaatacagcaaaaaatagttataaagttgtcaatggacagtgagaaatgcagaaccaaagccctcaaaactgctgctgaggtcaaaggta |
175 |
Q |
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| T |
30688633 |
aaatggcaaatacagcaaaagatagttataaagttgcaaatggattgtgagaaatgcagaaacaaagcactcaaaactgctgctgaggtcaaaggta |
30688537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 430 - 540
Target Start/End: Complemental strand, 30713502 - 30713392
Alignment:
| Q |
430 |
tataggtgtgacttcggtgtcattggaaggagatgataaggatcgtatatgtgtgaccggtgataatgtggacatagtttgcttagcaaatcagctgaag |
529 |
Q |
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||||||||| |||||||| |||||||||||| |||| |||||| |||||||||||| ||||||| ||||||||| | |||| |||||||| ||||| ||| |
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| T |
30713502 |
tataggtgtaacttcggtatcattggaaggaaatgacaaggatagtatatgtgtgatcggtgatgatgtggacacaatttgtttagcaaaccagctaaag |
30713403 |
T |
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| Q |
530 |
aagaagttcaa |
540 |
Q |
| |
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| T |
30713402 |
aaaaagttcaa |
30713392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 430 - 540
Target Start/End: Complemental strand, 30731812 - 30731702
Alignment:
| Q |
430 |
tataggtgtgacttcggtgtcattggaaggagatgataaggatcgtatatgtgtgaccggtgataatgtggacatagtttgcttagcaaatcagctgaag |
529 |
Q |
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||||||||| ||||| || |||||||||||| |||| |||||| |||||||||||| ||||||| ||||||||| | |||| |||||||| ||||| ||| |
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| T |
30731812 |
tataggtgtaacttcagtatcattggaaggaaatgacaaggatagtatatgtgtgatcggtgatgatgtggacacaatttgtttagcaaaccagctaaag |
30731713 |
T |
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| Q |
530 |
aagaagttcaa |
540 |
Q |
| |
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| T |
30731712 |
aaaaagttcaa |
30731702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 30733856 - 30733742
Alignment:
| Q |
61 |
cttagtaagctatatgtgaaatgacaaatacagcaaaaaatagttataaagttgtcaatggacagtgagaaatgcagaaccaaagccctcaaaactgctg |
160 |
Q |
| |
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|||| |||||||||| |||||| |||||||||||||||| |||||||||||| ||||||| | || |||||||||| |||||| ||||| ||||||| |
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| T |
30733856 |
cttaataagctatattggaaatggtaaatacagcaaaaaatggttataaagttgcaaatggactgcgataaatgcagaaacaaagctctcaagactgctg |
30733757 |
T |
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| Q |
161 |
ctgaggtcaaaggta |
175 |
Q |
| |
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|||||||| |||||| |
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| T |
30733756 |
ctgaggtccaaggta |
30733742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 420 - 541
Target Start/End: Complemental strand, 30687345 - 30687224
Alignment:
| Q |
420 |
catatacatatataggtgtgacttcggtgtcattggaaggagatgataaggatcgtatatgtgtgaccggtgataatgtggacatagtttgcttagcaaa |
519 |
Q |
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||||| ||||||||||||||||||| || |||||||||||||||||||| ||| |||| ||| || ||||||||||| |||| |||||||||||| || |
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| T |
30687345 |
catatgcatatataggtgtgacttcagtatcattggaaggagatgataaagataagatatctgtcactggtgataatgtagacacagtttgcttagccaa |
30687246 |
T |
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| Q |
520 |
tcagctgaagaagaagttcaac |
541 |
Q |
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||| ||||||||||||||| |
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| T |
30687245 |
catgctaaagaagaagttcaac |
30687224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 266
Target Start/End: Original strand, 30682624 - 30682656
Alignment:
| Q |
234 |
tttcaaaggagataaccaaattatcgctattaa |
266 |
Q |
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| T |
30682624 |
tttcaaaggagataaccaaattatcgctattaa |
30682656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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