View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7780_low_5 (Length: 437)
Name: NF7780_low_5
Description: NF7780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7780_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 1581006 - 1581425
Alignment:
| Q |
1 |
ttggtagaaaggatcggggcactaaaagtaaactggttggtatagaagtgattgtgttggacccttcttttagagagttcacaatgtctttgaggaagtg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1581006 |
ttggtagaaaggatcggggcactaaaagtaaactggttggtatagaagtgattgtgttggacccttcttttagagagttcacaatgtctttgaggaagtg |
1581105 |
T |
|
| Q |
101 |
gggcaaaagtctttacagtcttgtacaagattggaaacatgttatgaggcaaaatagatttgaaattggacaaaaactcaacatttggacatttagggtc |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1581106 |
gggcaaaagtctttacagtcttgtacaagattggaaacatgttatgaggcaaaatagttttgaaattggtcaaaaactcaacatttggacatttagggtc |
1581205 |
T |
|
| Q |
201 |
aatagcaagttgcactttctactcgacaaaaattaggtaatagctataaacttgtttatttgtttctgcatttaactctactttgtttatgcgattctgg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1581206 |
aatagcaagttgcactttctactcgacaaaaattaggtaatagctataaacttgtttatttgtttctgcatttaactgtactttgtttatgcgattctgg |
1581305 |
T |
|
| Q |
301 |
aagcttgatgaagaagactttgaaatagtttataaggagatggaccagtatcagcctcttgaagaattagtcttacctagctaggaagaattacattaca |
400 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1581306 |
aagcttgatgaagaagac-ttgaaatagtttataaggagatggaccagtatcagcctctggaagaattagtcttacctagctaggaagaattacattaca |
1581404 |
T |
|
| Q |
401 |
tagtcctcaagagtttatatt |
421 |
Q |
| |
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||||||||||||||||||||| |
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| T |
1581405 |
tagtcctcaagagtttatatt |
1581425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 1603809 - 1603390
Alignment:
| Q |
1 |
ttggtagaaaggatcggggcactaaaagtaaactggttggtatagaagtgattgtgttggacccttcttttagagagttcacaatgtctttgaggaagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1603809 |
ttggtagaaaggatcggggcactaaaagtaaactggttggtatagaagtgattgtgttggacccttcttttagagagttcacaatgtctttgaggaagtg |
1603710 |
T |
|
| Q |
101 |
gggcaaaagtctttacagtcttgtacaagattggaaacatgttatgaggcaaaatagatttgaaattggacaaaaactcaacatttggacatttagggtc |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1603709 |
gggcaaaagtctttacagtcttgtacaagattggaaacatgttatgaggcaaaatagttttgaaattggtcaaaaactcaacatttggacatttagggtc |
1603610 |
T |
|
| Q |
201 |
aatagcaagttgcactttctactcgacaaaaattaggtaatagctataaacttgtttatttgtttctgcatttaactctactttgtttatgcgattctgg |
300 |
Q |
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| T |
1603609 |
aatagcaagttgcactttctactcgacaaaaattaggtaatagctataaacttgtttatttgtttctgcatttaactgtactttgtttatgcgattctgg |
1603510 |
T |
|
| Q |
301 |
aagcttgatgaagaagactttgaaatagtttataaggagatggaccagtatcagcctcttgaagaattagtcttacctagctaggaagaattacattaca |
400 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1603509 |
aagcttgatgaagaagac-ttgaaatagtttataaggagatggaccagtatcagcctctggaagaattagtcttacctagctaggaagaattacattaca |
1603411 |
T |
|
| Q |
401 |
tagtcctcaagagtttatatt |
421 |
Q |
| |
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||||||||||||||||||||| |
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|
| T |
1603410 |
tagtcctcaagagtttatatt |
1603390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 29 - 277
Target Start/End: Original strand, 1587507 - 1587763
Alignment:
| Q |
29 |
taaactggttggtatagaagtgattgtgttggacccttcttttagagagttcacaatgtctttgaggaagtggggc----------aaaagtctttacag |
118 |
Q |
| |
|
||||| || |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || | |||| |||||| |
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| T |
1587507 |
taaacaggatggtttagaagtgactgtgttggacccttcttttagagagttcacaatgtctttgaggaagtggagcatgggaactaacaagt-attacag |
1587605 |
T |
|
| Q |
119 |
tcttgtacaagattggaaacatgttatgaggcaaaatagatttgaaattggacaaaaactcaacatttggacatttagggtcaatagcaagttgcacttt |
218 |
Q |
| |
|
|||| ||| | ||||||| |||| |||| ||||||| ||| ||| || ||||||||||||| ||||| |||||||||||| ||||||||||||| |
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| T |
1587606 |
tcttctacgtggttggaaaactgttgtgagcaaaaatagttttaaaaagggtaaaaaactcaacatctggacttttagggtcaatgacaagttgcacttt |
1587705 |
T |
|
| Q |
219 |
ctactcgacaaaaattaggtaatagctataaacttgtttatttgtttctgcatttaact |
277 |
Q |
| |
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|||| ||||| || |||| || | |||||||| ||||||| ||||||||||||||| |
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|
| T |
1587706 |
gtacttgacaataaccaggtgat-gttataaactcgtttattattttctgcatttaact |
1587763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 1590716 - 1590654
Alignment:
| Q |
29 |
taaactggttggtatagaagtgattgtgttggacccttcttttagagagttcacaatgtcttt |
91 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
1590716 |
taaaccggttggtttagaagtgattgtgttggacccttcttttagagagttcagaatgtcttt |
1590654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 112 - 300
Target Start/End: Complemental strand, 39615859 - 39615670
Alignment:
| Q |
112 |
tttacagtcttgtacaagattggaaacatgttatgaggcaaaatagatttgaaattggacaaaaactcaacatttggacatttagggtcaatagcaagtt |
211 |
Q |
| |
|
||||||||||| ||||| |||||||||||| | ||||| |||| | |||||||| || |||| ||||||| ||||| ||||||||||||| |||||| |
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| T |
39615859 |
tttacagtcttatacaaaattggaaacatgctgtgaggggaaatggttttgaaataggtcaaatactcaacgtttggtcatttagggtcaaggacaagtt |
39615760 |
T |
|
| Q |
212 |
gcactttctactcgacaaaaattaggtaatagctataaacttgtttatttgtttctgcatttaact-ctactttgtttatgcgattctgg |
300 |
Q |
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||| ||| ||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||| |
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| T |
39615759 |
gcagtttgtactcaacattaattaggtaatagctataaacttgtttatttctttctgcatttaactagtactttgtttatgcgtttctgg |
39615670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 39615951 - 39615893
Alignment:
| Q |
29 |
taaactggttggtatagaagtgattgtgttggacccttcttttagagagttcacaatgt |
87 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||| ||||||| |||||||||| |
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|
| T |
39615951 |
taaaccggttggtttagaagtgattgtgttggacccttattttagaagcttcacaatgt |
39615893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 36 - 274
Target Start/End: Complemental strand, 19270271 - 19270025
Alignment:
| Q |
36 |
gttggtatagaagtgattgtgttggacccttcttttagagagttcacaatgtctttgaggaagtggggc----------aaaagtctttacagtcttgta |
125 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || | |||| ||||||||||||| |
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|
| T |
19270271 |
gttggtttagaagtgattgtgttggacccttcttttagagagttcacaatgtcgttgaggaagtggagcatgggcattaacaagt-attacagtcttgta |
19270173 |
T |
|
| Q |
126 |
caagattggaaacatgttatgaggcaaaatagatttgaaattggacaaaaactcaacatttggacatttagggtcaatagcaagttgcactttctactcg |
225 |
Q |
| |
|
|| | ||||||| |||| |||| ||||||| ||||||| || ||||||| ||||| ||||| |||||||||||| ||||||||||||| |||||| |
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|
| T |
19270172 |
catggttggaaaactgttgtgagcaaaaatagttttgaaaagggtaaaaaacttaacatctggacttttagggtcaatgacaagttgcactttgtactcg |
19270073 |
T |
|
| Q |
226 |
acaaaaattaggtaatagctataaacttgtttatttgtttctgcattta |
274 |
Q |
| |
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|||| ||| |||| || | ||||||| ||||||| |||||||||||| |
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|
| T |
19270072 |
acaataatcaggtgat-gttataaacgcgtttattattttctgcattta |
19270025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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