View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7780_low_7 (Length: 396)
Name: NF7780_low_7
Description: NF7780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7780_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 2 - 384
Target Start/End: Complemental strand, 2842904 - 2842522
Alignment:
| Q |
2 |
gagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaagggagaatcnnnnnnnggaaa |
101 |
Q |
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| T |
2842904 |
gagaggttaattgaagaaagagtttcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaagggaaaatctttttttggaaa |
2842805 |
T |
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| Q |
102 |
aggaacttgaaacttataggcaaatgagtttgacagaaagttgcgagttgcattcgaagtcagcagaggtgcggcttagtgaatggaaacgaagctcgcc |
201 |
Q |
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| T |
2842804 |
aggaacttgaaacttttaggcaaatgagtttgacagaaagttgcgagttgcattcgaagtcagcagaggtgcggcttagtgaatggaaacgaagctcgcc |
2842705 |
T |
|
| Q |
202 |
actttcatttgaaacatgtgatgatccatcacagatcgaaagtactgtacctattgttaagcaagattgtacgaataatacagaacatgaagagttggat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2842704 |
actttcatttgaaacatgtgatgatccatcacagatcgaaagtactgtacttattgttaagcaagattgtaccaataatacagaacatgaagagttggat |
2842605 |
T |
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| Q |
302 |
aaaaacactgaatacaaggatcgagcatgtgatgatttgcatagctccttttatgatactgagtctgatgttcttgatgtcca |
384 |
Q |
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| T |
2842604 |
aaaaacactgaatacaaggatcgagcatgtgatgatttgcatagctccttttatgatactgagtctgatgttcttgatgtcca |
2842522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 2838804 - 2838683
Alignment:
| Q |
1 |
tgagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaagggagaatcnnnnnnnggaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
2838804 |
tgagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaaggagaatctctttttggaa |
2838705 |
T |
|
| Q |
101 |
aaggaacttgaaacttataggc |
122 |
Q |
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||||||||||||| |||||||| |
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| T |
2838704 |
aaggaacttgaaagttataggc |
2838683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 290 - 380
Target Start/End: Complemental strand, 2838590 - 2838500
Alignment:
| Q |
290 |
gaagagttggataaaaacactgaatacaaggatcgagcatgtgatgatttgcatagctccttttatgatactgagtctgatgttcttgatg |
380 |
Q |
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|||||| |||| |||||| | || ||||||||| ||| || ||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2838590 |
gaagaggtggaggaaaacagtcaacacaaggatcaagcgtgcaatgatatgcatagatccttttatgatactgagtctgatgttcttgatg |
2838500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 235
Target Start/End: Complemental strand, 2838679 - 2838645
Alignment:
| Q |
201 |
cactttcatttgaaacatgtgatgatccatcacag |
235 |
Q |
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| T |
2838679 |
cactttcatttgaaacttgtgatgatccatcacag |
2838645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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