View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7780_low_9 (Length: 363)
Name: NF7780_low_9
Description: NF7780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7780_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 92 - 346
Target Start/End: Original strand, 55082469 - 55082740
Alignment:
| Q |
92 |
gggaaataacataggacgtttgactcatcacacggtcatctaagacgacgcaaaaaacaacagatagattcaaaagaatatagttccatt---------- |
181 |
Q |
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| T |
55082469 |
gggaaataacataggacgtttgattcatcacacggtcatctaagacgacgcaaaaaacaacagataaattcaaaagaatatagtttcattgaagttaggt |
55082568 |
T |
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| Q |
182 |
-------tcagatttccacttaagaggaaagatcaaaatggacaaagaaattcctgatgtacgaatgttgtctcagctagtcaatcctattgtgctatat |
274 |
Q |
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| T |
55082569 |
tctcatttcagatttccacttaagaggaaagatcaaaatggacaaagaaattcctgatgtacgaatgttgtctcaactagtcaatcctattgtgctatat |
55082668 |
T |
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| Q |
275 |
gttatcactaattaattaattattgaccgttcaagcgagaagttgtatgtaagaccacccatggatgacagt |
346 |
Q |
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| T |
55082669 |
gttatcactaattaattaattattggccgttcaagcgagaagttgtatgtaagaccacccatggatgacagt |
55082740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 178 - 274
Target Start/End: Complemental strand, 38035382 - 38035286
Alignment:
| Q |
178 |
catttcagatttccacttaagaggaaagatcaaaatggacaaagaaattcctgatgtacgaatgttgtctcagctagtcaatcctattgtgctatat |
274 |
Q |
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| T |
38035382 |
catttaagatttccacttaagaggaaacatcaaaattgacaaaaaaattgctgatgtacaaaaattgtctcaattggtcaatcctattgtcctatat |
38035286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 328
Target Start/End: Complemental strand, 50913797 - 50913649
Alignment:
| Q |
178 |
catttcagatttccacttaagaggaaagatcaaaatggacaaagaaattcctgatgtacgaatgttgtctcagctagtcaatcctattgtgctatatgtt |
277 |
Q |
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| T |
50913797 |
catttaagatttccacttaagaggaagcatcaaaattgacaaagaaatttccgatgtacaaaacttgtctcaactagtcagtcctactatcc--tatgtt |
50913700 |
T |
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| Q |
278 |
atcactaattaattaattattgaccgttcaagcgagaagttgtatgtaaga |
328 |
Q |
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| T |
50913699 |
atcactcatacatgaattatagtctgttcaagtgagaagctgtatgtaaga |
50913649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 38032596 - 38032518
Alignment:
| Q |
185 |
gatttccacttaagaggaaagatcaaaatggacaaagaaattcctgatgtacgaatgttgtctcagctagtcaatccta |
263 |
Q |
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| T |
38032596 |
gatttccacctaagaggaaacatcaaaattgacaaagaaatttctgatgtacaaaaattgtctcaactggtcaatccta |
38032518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 38038861 - 38038783
Alignment:
| Q |
185 |
gatttccacttaagaggaaagatcaaaatggacaaagaaattcctgatgtacgaatgttgtctcagctagtcaatccta |
263 |
Q |
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| T |
38038861 |
gatttcaacttaagaggaaacatcaaaattgacaaagaagttgctgatgtacaaaaattgtctcaactggtcaatccta |
38038783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 187 - 263
Target Start/End: Complemental strand, 38027767 - 38027691
Alignment:
| Q |
187 |
tttccacttaagaggaaagatcaaaatggacaaagaaattcctgatgtacgaatgttgtctcagctagtcaatccta |
263 |
Q |
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| T |
38027767 |
tttccacataagaggaaacatcaaaattgataaagaaattgctgatgtacgaaaattatctcaactggtcaatccta |
38027691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 38035248 - 38035208
Alignment:
| Q |
288 |
aattaattattgaccgttcaagcgagaagttgtatgtaaga |
328 |
Q |
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| T |
38035248 |
aattaattatagaccgttcaagagagaagctgtatgtaaga |
38035208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 21608571 - 21608493
Alignment:
| Q |
185 |
gatttccacttaagaggaaagatcaaaatggacaaagaaattcctgatgtacgaatgttgtctcagctagtcaatccta |
263 |
Q |
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| T |
21608571 |
gatttcaacataagaggaaacatcaaaattgacaaagaaattactgatgtacaaaaaatgtctcaactggtcaatccta |
21608493 |
T |
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