View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7781_high_1 (Length: 680)

Name: NF7781_high_1
Description: NF7781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7781_high_1
NF7781_high_1
[»] chr4 (15 HSPs)
chr4 (18-667)||(55605889-55606565)
chr4 (18-275)||(55618458-55618710)
chr4 (18-275)||(55625762-55626014)
chr4 (307-572)||(28146950-28147220)
chr4 (293-571)||(25967966-25968255)
chr4 (377-565)||(13198087-13198275)
chr4 (377-572)||(38411875-38412071)
chr4 (409-509)||(46308390-46308491)
chr4 (459-571)||(11440557-11440670)
chr4 (16-88)||(55618080-55618151)
chr4 (16-88)||(55625384-55625455)
chr4 (622-663)||(25967839-25967880)
chr4 (377-440)||(11440664-11440730)
chr4 (622-661)||(28146827-28146866)
chr4 (590-622)||(30839756-30839788)
[»] chr2 (9 HSPs)
chr2 (328-621)||(37794604-37794903)
chr2 (345-661)||(17988957-17989289)
chr2 (310-478)||(5430210-5430383)
chr2 (322-451)||(19263821-19263955)
chr2 (421-534)||(35016430-35016545)
chr2 (322-435)||(35016270-35016388)
chr2 (487-572)||(19263739-19263824)
chr2 (590-659)||(5428501-5428569)
chr2 (480-571)||(5428609-5428700)
[»] chr1 (9 HSPs)
chr1 (309-572)||(32617504-32617771)
chr1 (317-663)||(9457484-9457842)
chr1 (317-663)||(9461581-9461939)
chr1 (377-513)||(12990541-12990677)
chr1 (379-572)||(34664746-34664939)
chr1 (480-622)||(24699906-24700049)
chr1 (377-542)||(14081718-14081874)
chr1 (622-661)||(32617851-32617890)
chr1 (627-659)||(12990185-12990217)
[»] chr8 (6 HSPs)
chr8 (312-663)||(23489907-23490273)
chr8 (377-440)||(13396884-13396947)
chr8 (377-440)||(13402182-13402245)
chr8 (404-528)||(7154302-7154427)
chr8 (377-428)||(14370795-14370846)
chr8 (482-541)||(14867365-14867424)
[»] chr7 (11 HSPs)
chr7 (344-658)||(47363672-47363991)
chr7 (377-572)||(25635910-25636106)
chr7 (377-539)||(39653463-39653626)
chr7 (433-545)||(10493472-10493584)
chr7 (377-573)||(33049083-33049289)
chr7 (377-440)||(10493376-10493439)
chr7 (377-444)||(7493070-7493137)
chr7 (377-457)||(31742971-31743052)
chr7 (448-569)||(45435363-45435484)
chr7 (389-463)||(39614647-39614722)
chr7 (377-422)||(45435542-45435587)
[»] chr5 (9 HSPs)
chr5 (309-570)||(41283456-41283726)
chr5 (377-569)||(13424646-13424835)
chr5 (377-573)||(39426097-39426293)
chr5 (378-572)||(22927072-22927268)
chr5 (311-545)||(36491489-36491720)
chr5 (414-572)||(16341461-16341618)
chr5 (428-573)||(19967472-19967612)
chr5 (377-452)||(20141544-20141620)
chr5 (622-662)||(41283333-41283373)
[»] chr3 (4 HSPs)
chr3 (376-571)||(11783412-11783609)
chr3 (380-572)||(7299074-7299267)
chr3 (480-528)||(21926545-21926593)
chr3 (377-414)||(53527191-53527228)
[»] chr6 (8 HSPs)
chr6 (377-562)||(9177566-9177755)
chr6 (294-479)||(26660535-26660725)
chr6 (294-479)||(26766506-26766696)
chr6 (459-572)||(32296331-32296445)
chr6 (448-572)||(10117131-10117259)
chr6 (482-572)||(22509049-22509138)
chr6 (591-640)||(32296243-32296291)
chr6 (624-658)||(8169234-8169268)


Alignment Details
Target: chr4 (Bit Score: 529; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 18 - 667
Target Start/End: Original strand, 55605889 - 55606565
Alignment:
Q  18 acaactatgatatggaacataaggatatcattgttaaaggtgtctcattggcttttcgatttcttgaaagcaaaggtgtgattcagtcgcatgatatttt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  55605889 acaactatgatatggaacataaggatatcattgttaaaggtgtctcattggcttttcgatttcttgaaagcaaaggtgtgattcagtcgcttgatatttt 55605988  T
Q  118 gacttcttgtcctgcattgtccccttcactaaaagagggcttgagtaggctattatcatctggaaagcctgaaagctccaaagaatttcttccaggtatg 217  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55605989 gacttcttgtcctacattgtccccttcactaaaagagggcttgagtaggctattatcatctggaaagcctgaaagctccaaagaatttcttccaggtatg 55606088  T
Q  218 ttctagtctatcatggacatggttaccttcaagtttcttaaatttgtctttaatctaaattaaggtagctaagaacaaggttttagttaacggtcgcgat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  55606089 ttctagtctatcatggacatggttaccttcaagtttcttaaatttgtctttaatctaaattaaggtagctaagaacaaggttttaattaacggtcgcgat 55606188  T
Q  318 cgcatataggattttgcgatttcgatcgttacgggtgttgcgatacggattacggttg-----ttgtgaattaatcacaacattgcacaactcttcaata 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     |||||||||||||||||||||||||||||||| ||||    
T  55606189 cgcatataggattttgcgatttcgatcgttacgggtgttgcgatacagattacggttgtcgcattgtgaattaatcacaacattgcacaactcttaaata 55606288  T
Q  413 atgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatataaggaaataacttatgtaatttatgatcaaatatgcactaaaaa 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  55606289 atgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatataaggaaataacttatgtaatttatgatcaaatatgtactaaaaa 55606388  T
Q  513 tataattttcatctatatcaattgaaaaaatatttggattctatgtctattgtcatgaacagaannnnnnngctgccgtaacggtgtt------------ 600  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       || ||||||||||||||                
T  55606389 tataattttcatctatatcaattgaaaaaatatttggattccatgtctattgtcatgaacagaatttttttgcggccgtaacggtgtttcatcgcggctg 55606488  T
Q  601 ----------tcgtcgtgatttttgttcactcggtgaaaaacggtaacgtccactacctatacctttttgtcgggcc 667  Q
              |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  55606489 taacggtgtttcgtcgtgatttttgttcactcagtgaaaaacggtaacgtccactacctatacctttttgtcgggcc 55606565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 55618458 - 55618710
Alignment:
Q  18 acaactatgatatggaacataaggatatcattgttaaa-ggtgtctcattggcttttcgatttcttgaaagcaaaggtgtgattcagtcgcatgatattt 116  Q
    |||||||||||||||||||||||||||||||||| ||| ||  |||||||||| ||| ||||||||||||||||||||||||||||||||||| || |||    
T  55618458 acaactatgatatggaacataaggatatcattgtcaaaaggcatctcattggccttttgatttcttgaaagcaaaggtgtgattcagtcgcataatgttt 55618557  T
Q  117 tgacttcttgtcctgcattgtccccttcactaaaagagggcttgagtaggctattatcatctggaaagcctgaaagctccaaagaatttcttccaggtat 216  Q
    ||||||||| |||| ||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| |||||| || |||| |||||||||||||||    
T  55618558 tgacttcttctcctacattgtctccttctctaaaagagggattgagtaggctattatcatctggaaagcttgaaagttctaaaggatttcttccaggtat 55618657  T
Q  217 gttctagtctatcatggacatggttaccttcaagtttcttaaatttgtctttaatctaa 275  Q
    ||||||||||||      |||| ||||||||||||||||||||||| ||||||||||||    
T  55618658 gttctagtctat------catgcttaccttcaagtttcttaaatttatctttaatctaa 55618710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 55625762 - 55626014
Alignment:
Q  18 acaactatgatatggaacataaggatatcattgttaaa-ggtgtctcattggcttttcgatttcttgaaagcaaaggtgtgattcagtcgcatgatattt 116  Q
    |||||||||||||||||||||||||||||||||| ||| ||  |||||||||| ||| ||||||||||||||||||||||||||||||||||| || |||    
T  55625762 acaactatgatatggaacataaggatatcattgtcaaaaggcatctcattggccttttgatttcttgaaagcaaaggtgtgattcagtcgcataatgttt 55625861  T
Q  117 tgacttcttgtcctgcattgtccccttcactaaaagagggcttgagtaggctattatcatctggaaagcctgaaagctccaaagaatttcttccaggtat 216  Q
    ||||||||| |||| ||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| |||||| || |||| |||||||||||||||    
T  55625862 tgacttcttctcctacattgtctccttctctaaaagagggattgagtaggctattatcatctggaaagcttgaaagttctaaaggatttcttccaggtat 55625961  T
Q  217 gttctagtctatcatggacatggttaccttcaagtttcttaaatttgtctttaatctaa 275  Q
    ||||||||||||      |||| ||||||||||||||||||||||| ||||||||||||    
T  55625962 gttctagtctat------catgcttaccttcaagtttcttaaatttatctttaatctaa 55626014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 307 - 572
Target Start/End: Complemental strand, 28147220 - 28146950
Alignment:
Q  307 acggtcgcgatcgcatataggattttgcgatttcgatcgttacgggtgttgcgatacggattacggttgt-----tgtgaattaatcacaacattgcaca 401  Q
    ||||||||| || ||||||||||||||| ||||||  | ||||||||||| |||||| || | |||||||     |||||||||||||||||||||||||    
T  28147220 acggtcgcggtcacatataggattttgcaatttcggccattacgggtgttacgatacagagtgcggttgtcgcggtgtgaattaatcacaacattgcaca 28147121  T
Q  402 actcttcaataatgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatataaggaaataacttatgtaatttatgatcaaata 501  Q
    |||||| ||||||  ||  ||||||||||||||||||||| |||||||||||| ||||||| || ||||||| |||||||||||||||||||||||||||    
T  28147120 actcttaaataatattatcaacttaaataacttaaactagggaaagatttggaattctaaattagataaggagataacttatgtaatttatgatcaaata 28147021  T
Q  502 tgcactaaaaatataattttcatctatatcaattgaaaaaatatttggattctatgtctattgtcatgaac 572  Q
    || ||||||||||| |||||||||||| ||||||||||||||||   ||||||||||||||||||||||||    
T  28147020 tgtactaaaaatatgattttcatctatctcaattgaaaaaatatccagattctatgtctattgtcatgaac 28146950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 293 - 571
Target Start/End: Complemental strand, 25968255 - 25967966
Alignment:
Q  293 caaggttttagttaacggtcgcgatcgcatataggattt----tgcgatttcgatcgttacgggtgttgcgatacggattacggttgt-----tgtgaat 383  Q
    ||||||||||  |||| |||||| |||| ||||||||||    ||||||||||  ||||| ||||||||| ||||||||| |||||||     |||||||    
T  25968255 caaggttttaaataacagtcgcggtcgcgtataggatttcgaatgcgatttcggccgttatgggtgttgctatacggattgcggttgtcgcggtgtgaat 25968156  T
Q  384 taatcacaacattgcacaactcttcaataatgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatataaggaaataacttat 483  Q
    |||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| ||  ||||||||||| ||||| | |||||||||    
T  25968155 taatcacaacattgcacaactcttaaataatgatagtcacttacataacttaaactagagaaagatctgacgttctaaactagataagaagataacttat 25968056  T
Q  484 gtaatttatgatcaaatatgcactaaaaatataattttcatctatatcaattgaa--aaaatatttggattctatgtctattgtcatgaa 571  Q
    ||||||||| |||||||||| || |||||||| ||| ||||||||||||||||||  |||||||  | ||||||||||| ||||||||||    
T  25968055 gtaatttattatcaaatatgtaccaaaaatatgattatcatctatatcaattgaaaaaaaatatccgaattctatgtctgttgtcatgaa 25967966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 377 - 565
Target Start/End: Original strand, 13198087 - 13198275
Alignment:
Q  377 tgtgaattaatcacaacattgcacaactcttcaataatgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatataaggaaat 476  Q
    ||||||||||||||||||||||||||||||| || |||||| |||||||  ||||||||||||||| ||||||||||||||||||| || ||||||| ||    
T  13198087 tgtgaattaatcacaacattgcacaactcttaaacaatgatcgtaactttgataacttaaactagacaaagatttggagttctaaattagataaggagat 13198186  T
Q  477 aacttatgtaatttatgatcaaatatgcactaaaaatataattttcatctatatcaattgaaaaaatatttggattctatgtctattgt 565  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||||||||||||||  ||||||||||||| ||||    
T  13198187 aacttatgtaatttatgatcaaatatgcactaagaatatgattttcatgtatctcaattgaaaaaatatccggattctatgtcttttgt 13198275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 377 - 572
Target Start/End: Original strand, 38411875 - 38412071
Alignment:
Q  377 tgtgaattaatcacaacattgcacaactcttcaataatgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatataaggaaat 476  Q
    |||||||||||||||||||||||||||| || || |||||||| ||  |||||||||||| ||||||| |||||||||||||||||||| ||||||||||    
T  38411875 tgtgaattaatcacaacattgcacaacttttaaacaatgataggaatgtaaataacttaacctagagatagatttggagttctaaactagataaggaaat 38411974  T
Q  477 aac-ttatgtaatttatgatcaaatatgcactaaaaatataattttcatctatatcaattgaaaaaatatttggattctatgtctattgtcatgaac 572  Q
    ||| ||||||||||||| ||||| |||| | ||||||||| |||||||||||| | ||||||||| |||||  ||||   |||||||||||||||||    
T  38411975 aacattatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaaagatattcagatttggtgtctattgtcatgaac 38412071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 409 - 509
Target Start/End: Original strand, 46308390 - 46308491
Alignment:
Q  409 aataatgatagtaacttaaataacttaaact-agagaaagatttggagttctaaactatataaggaaataacttatgtaatttatgatcaaatatgcact 507  Q
    ||||||||||||||||||||||||||||| | ||||| |||||| |||||||||||||  |||||| ||||||||||||||||||||||||||||| |||    
T  46308390 aataatgatagtaacttaaataacttaaattgagagagagatttagagttctaaactaactaaggagataacttatgtaatttatgatcaaatatgtact 46308489  T
Q  508 aa 509  Q
    ||    
T  46308490 aa 46308491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 459 - 571
Target Start/End: Complemental strand, 11440670 - 11440557
Alignment:
Q  459 taaactatataaggaaataac-ttatgtaatttatgatcaaatatgcactaaaaatataattttcatctatatcaattgaaaaaatatttggattctatg 557  Q
    ||||||||||||| | ||||| |||||||||||||||||||||||| ||||||||||| |||||||||||| | |||||||||| |||  ||| | | ||    
T  11440670 taaactatataagaagataacattatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatcttaattgaaaaattatccggactatgtg 11440571  T
Q  558 tctattgtcatgaa 571  Q
    ||||||||||||||    
T  11440570 tctattgtcatgaa 11440557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 55618151 - 55618080
Alignment:
Q  16 tcacaactatgatatggaacataaggatatcattgttaaaggtgtctcattggcttttcgatttcttgaaagc 88  Q
    ||||||||||| ||||||||||||||||||||||||| ||||  ||||||||||||||| |||| ||||||||    
T  55618151 tcacaactatggtatggaacataaggatatcattgttcaaggcatctcattggcttttcaattt-ttgaaagc 55618080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 55625455 - 55625384
Alignment:
Q  16 tcacaactatgatatggaacataaggatatcattgttaaaggtgtctcattggcttttcgatttcttgaaagc 88  Q
    ||||||||||| ||||||||||||||||||||||||| ||||  ||||||||||||||| |||| ||||||||    
T  55625455 tcacaactatggtatggaacataaggatatcattgttcaaggcatctcattggcttttcaattt-ttgaaagc 55625384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 622 - 663
Target Start/End: Complemental strand, 25967880 - 25967839
Alignment:
Q  622 cggtgaaaaacggtaacgtccactacctatacctttttgtcg 663  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  25967880 cggtggaaaacggtaacgtccgctacctatacctttttgtcg 25967839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 11440730 - 11440664
Alignment:
Q  377 tgtgaattaatcacaacattgcacaactctt---caataatgatagtaacttaaataacttaaacta 440  Q
    |||||||||||||||||||||  ||||||||    ||||||||||||||  ||||||||||||||||    
T  11440730 tgtgaattaatcacaacattgttcaactcttaaataataatgatagtaatgtaaataacttaaacta 11440664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 622 - 661
Target Start/End: Complemental strand, 28146866 - 28146827
Alignment:
Q  622 cggtgaaaaacggtaacgtccactacctatacctttttgt 661  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  28146866 cggtgaaaaacggtaatgtccgctacctatacctttttgt 28146827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 590 - 622
Target Start/End: Original strand, 30839756 - 30839788
Alignment:
Q  590 gtaacggtgtttcgtcgtgatttttgttcactc 622  Q
    ||||||||||||| |||||||||||||||||||    
T  30839756 gtaacggtgtttcatcgtgatttttgttcactc 30839788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 155; Significance: 6e-82; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 328 - 621
Target Start/End: Original strand, 37794604 - 37794903
Alignment:
Q  328 attttgcgatttcgatcgttacgggtgttgcgatacggattacggttgt-----tgtgaattaatcacaacattgcacaactcttcaataatgatagtaa 422  Q
    |||| |||||||||  ||||| |||||||||||||| |||| |||||||     ||||||||||||||||||||||||||||||| ||||||||||||||    
T  37794604 atttcgcgatttcggccgttatgggtgttgcgatacagattgcggttgtcgtggtgtgaattaatcacaacattgcacaactcttaaataatgatagtaa 37794703  T
Q  423 cttaaataacttaaactagagaaagatttggagttctaaactatataaggaaataacttatgtaatttatgatcaaatatgcactaaaaatataattttc 522  Q
    |||| |||||||| || |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  37794704 cttagataacttagaccagagaaagatttggagttctaaactagataaggagataacttatgtaatttatgatcaaatatgtactaaaaatatgattttc 37794803  T
Q  523 atctatatcaattgaaaaaatatttggattctatgtctattgtcatgaac-agaannnnnnngctgccgtaacggtgtttcgtcgtgatttttgttcact 621  Q
     ||||| ||||||||||||||||   |||||||||||| ||||||||||| | |        || |||||||||||||||||| ||||||||||||||||    
T  37794804 ttctatctcaattgaaaaaatatccagattctatgtcttttgtcatgaacgacattttttttgcagccgtaacggtgtttcgtggtgatttttgttcact 37794903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 345 - 661
Target Start/End: Original strand, 17988957 - 17989289
Alignment:
Q  345 gttacgggtgttgcgatacggattacggttgt-----tgtgaattaatcacaacattgcacaactcttcaataatgatagtaacttaaataacttaaact 439  Q
    |||||||||||||||||||||||| |||||||     |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  17988957 gttacgggtgttgcgatacggattgcggttgtcgaggtgtgaattaatcacaatattgcacaactcttaaataatgatagtaacttaaataacttaaact 17989056  T
Q  440 agagaaagatttggagttctaaactatataaggaaataacttatgtaatttatgatcaaatatgcactaaaaatataattttcatctatatcaattgaaa 539  Q
    ||| |||||||||||||||||||||| ||||||| |||| |||| ||||||||||||||||||| ||||||||||| ||||||||| || ||||||||||    
T  17989057 agaaaaagatttggagttctaaactagataaggagataaattatataatttatgatcaaatatgtactaaaaatatgattttcatcgatctcaattgaaa 17989156  T
Q  540 aaatatttg--gattctatgtctattgtcatgaacagaannnnnnngctgccgtaacggtgtttcgtcgtgatttttgttcact---------cggtgaa 628  Q
    ||| |  |   ||||||||||||||| |||||||| |         || |||||||||||||||||||||||||||||||||||         |||||||    
T  17989157 aaaaaaatccagattctatgtctattatcatgaacggctgttttttgcggccgtaacggtgtttcgtcgtgatttttgttcacttagtaaaaacggtgaa 17989256  T
Q  629 aaacggtaacgtccactacctatacctttttgt 661  Q
    ||||||||| || | ||||||||||||||||||    
T  17989257 aaacggtaatgttcgctacctatacctttttgt 17989289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 310 - 478
Target Start/End: Complemental strand, 5430383 - 5430210
Alignment:
Q  310 gtcgcgatcgcatataggattttgcgatttcgatcgttacgggtgttgcgatacggattacggttgt-----tgtgaattaatcacaacattgcacaact 404  Q
    |||||| |||| |||| |||||| |||||||| | ||||||| ||||||  ||| ||||  ||||||     |||||||||||||||| |||||||||||    
T  5430383 gtcgcggtcgcgtatatgattttacgatttcggttgttacggatgttgcattacagattgtggttgtcgcggtgtgaattaatcacaatattgcacaact 5430284  T
Q  405 cttcaataatgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatataaggaaataa 478  Q
    ||| ||||||||||||||| |||||||||||||||||||| ||| ||||| ||||||| || ||||||| ||||    
T  5430283 cttaaataatgatagtaacataaataacttaaactagagatagagttggatttctaaagtagataaggagataa 5430210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 322 - 451
Target Start/End: Complemental strand, 19263955 - 19263821
Alignment:
Q  322 tataggattttgcgatttcgatcgttacgggtgttgcgatacggattacggttgt-----tgtgaattaatcacaacattgcacaactcttcaataatga 416  Q
    |||| ||||||||||||||| | |||| |||||||||||||   ||| |||||||     |||||||||||||||||||||||||| |||| ||||||||    
T  19263955 tatatgattttgcgatttcggttgttatgggtgttgcgatatcaattgcggttgttgcgctgtgaattaatcacaacattgcacaattcttaaataatga 19263856  T
Q  417 tagtaacttaaataacttaaactagagaaagattt 451  Q
    ||||||| ||||||||||| |||||||| ||||||    
T  19263855 tagtaacataaataacttatactagagatagattt 19263821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 421 - 534
Target Start/End: Original strand, 35016430 - 35016545
Alignment:
Q  421 aacttaaataactt--aaactagagaaagatttggagttctaaactatataaggaaataacttatgtaatttatgatcaaatatgcactaaaaatataat 518  Q
    ||||||||||||||  | |||||  ||||||||||| |||||||||| ||||||| ||||||||| ||||||||||||||||||| |  |||||||| ||    
T  35016430 aacttaaataacttttatactagttaaagatttggaattctaaactagataaggagataacttatataatttatgatcaaatatgtatcaaaaatatgat 35016529  T
Q  519 tttcatctatatcaat 534  Q
    |||||||||| |||||    
T  35016530 tttcatctatctcaat 35016545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 322 - 435
Target Start/End: Original strand, 35016270 - 35016388
Alignment:
Q  322 tataggattttgcgatttcgatcgttacgggtgttgcgatacggattacggttgt-----tgtgaattaatcacaacattgcacaactcttcaataatga 416  Q
    |||||||||| |||||||||  |||||  |||||||||||||  | | |||||||     |||||||||||||||||||| |||||||||| ||||||||    
T  35016270 tataggatttcgcgatttcggccgttaaaggtgttgcgatacaaactgcggttgtcgcggtgtgaattaatcacaacattacacaactcttaaataatga 35016369  T
Q  417 tagtaacttaaataactta 435  Q
    |||||||||||||||||||    
T  35016370 tagtaacttaaataactta 35016388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 487 - 572
Target Start/End: Complemental strand, 19263824 - 19263739
Alignment:
Q  487 atttatgatcaaatatgcactaaaaatataattttcatctatatcaattgaaaaaatatttggattctatgtctattgtcatgaac 572  Q
    ||||||||||||||||| | ||||||||| |||||||||||| |||||||||| ||||| | |||||||| |||||||||||||||    
T  19263824 atttatgatcaaatatgtattaaaaatatgattttcatctatctcaattgaaacaatatcttgattctatatctattgtcatgaac 19263739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 590 - 659
Target Start/End: Complemental strand, 5428569 - 5428501
Alignment:
Q  590 gtaacggtgtttcgtcgtgatttttgttcactcggtgaaaaacggtaacgtccactacctataccttttt 659  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||  ||||||||| ||||||    
T  5428569 gtaacggtgtttcgtcgtgatttttgttcactctgt-aaaaacggtaacgtcggctacctatatcttttt 5428501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 480 - 571
Target Start/End: Complemental strand, 5428700 - 5428609
Alignment:
Q  480 ttatgtaatttatgatcaaatatgcactaaaaatataattttcatctatatcaattgaaaaaatatttggattctatgtctattgtcatgaa 571  Q
    ||||||||||||||||||| |||| ||||| ||||| |||||||||||| |||||||||| |||||    ||| | ||||||||||||||||    
T  5428700 ttatgtaatttatgatcaattatgtactaataatatgattttcatctatctcaattgaaataatatccaaattttgtgtctattgtcatgaa 5428609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 153; Significance: 1e-80; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 309 - 572
Target Start/End: Original strand, 32617504 - 32617771
Alignment:
Q  309 ggtcgcgatcgcatataggattttgcgatttcgatcgttacgggtgttgcgatacggattacggttgt-----tgtgaattaatcacaacattgcacaac 403  Q
    ||||||| | ||||| | |||||||||||||||| ||||||||||||||||||| ||||| |||||||     ||| |||||||||||||||||||||||    
T  32617504 ggtcgcggttgcatacatgattttgcgatttcgaccgttacgggtgttgcgatatggattgcggttgtcgcggtgtaaattaatcacaacattgcacaac 32617603  T
Q  404 tcttcaataatgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatataaggaaataacttatgtaatttatgatcaaatatg 503  Q
    |||| ||||| ||||||||||| ||||||||||||||||||||  ||| ||||| ||||||| ||||||| |||||||||||||||||||||||||||||    
T  32617604 tcttaaataacgatagtaacttgaataacttaaactagagaaatctttagagtt-taaactagataaggagataacttatgtaatttatgatcaaatatg 32617702  T
Q  504 cactaaaaatataattttcatctatatcaattgaaaaaatatttggattctatgtctattgtcatgaac 572  Q
     ||||||||||| |||||||||||| |||||||||||||||   |||||||||||||||||||||||||    
T  32617703 tactaaaaatatgattttcatctatctcaattgaaaaaatacccggattctatgtctattgtcatgaac 32617771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 317 - 663
Target Start/End: Complemental strand, 9457842 - 9457484
Alignment:
Q  317 tcgcatataggattttgcgatttcgatcgttacgggtgttgcgatacggattacggttgttg-----tgaattaatcacaacattgcacaactcttcaat 411  Q
    |||| ||||||||||  |||||||| |||||| ||||||||||||||||||| |||||||||     ||||||||||||||||||||||||||||| |||    
T  9457842 tcgcgtataggatttcacgatttcggtcgttatgggtgttgcgatacggattgcggttgttgcggtgtgaattaatcacaacattgcacaactcttaaat 9457743  T
Q  412 aatgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatataaggaaataacttatgtaatttatgatcaaatatgcactaaaa 511  Q
    ||||||||||||||||||||||||||||||   ||||||| ||||||||||| |  |||||| |||||||  |||||||||||||| ||||| |  ||||    
T  9457742 aatgatagtaacttaaataacttaaactag---aagattttgagttctaaacaaggtaaggagataacttgagtaatttatgatcagatatgtatcaaaa 9457646  T
Q  512 atataattttcatctatatcaattg-aaaaaatatttggattctatgtctattgtcatgaacagaannnnnnngctgccgtaacggtgtttcgtcgtgat 610  Q
    |||| ||||| |||||| ||||||| ||||||||| |||||||||||||||||||||||||| | |       || || ||||||| |||||||||||||    
T  9457645 atatgatttttatctatctcaattgaaaaaaatatctggattctatgtctattgtcatgaacggcatttttttgcggctgtaacggcgtttcgtcgtgat 9457546  T
Q  611 ttttgttcac---------tcggtgaaaaacggtaacgtccactacctatacctttttgtcg 663  Q
    ||||||||||         |||||||||||||| ||||||| || |||||||||||||||||    
T  9457545 ttttgttcactctgaaatttcggtgaaaaacggcaacgtccgctgcctatacctttttgtcg 9457484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 317 - 663
Target Start/End: Complemental strand, 9461939 - 9461581
Alignment:
Q  317 tcgcatataggattttgcgatttcgatcgttacgggtgttgcgatacggattacggttgttg-----tgaattaatcacaacattgcacaactcttcaat 411  Q
    |||| ||||||||||  |||||||| |||||| ||||||||||||||||||| |||||||||     ||||||||||||||||||||||||||||| |||    
T  9461939 tcgcgtataggatttcacgatttcggtcgttatgggtgttgcgatacggattgcggttgttgcggtgtgaattaatcacaacattgcacaactcttaaat 9461840  T
Q  412 aatgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatataaggaaataacttatgtaatttatgatcaaatatgcactaaaa 511  Q
    ||||||||||||||||||||||||||||||   ||||||| ||||||||||| |  |||||| |||||||  |||||||||||||| ||||| |  ||||    
T  9461839 aatgatagtaacttaaataacttaaactag---aagattttgagttctaaacaaggtaaggagataacttgagtaatttatgatcagatatgtatcaaaa 9461743  T
Q  512 atataattttcatctatatcaattg-aaaaaatatttggattctatgtctattgtcatgaacagaannnnnnngctgccgtaacggtgtttcgtcgtgat 610  Q
    |||| ||||| |||||| ||||||| ||||||||| |||||||||||||||||||||||||| | |       || || ||||||| |||||||||||||    
T  9461742 atatgatttttatctatctcaattgaaaaaaatatctggattctatgtctattgtcatgaacggcatttttttgcggctgtaacggcgtttcgtcgtgat 9461643  T
Q  611 ttttgttcac---------tcggtgaaaaacggtaacgtccactacctatacctttttgtcg 663  Q
    ||||||||||         |||||||||||||| ||||||| || |||||||||||||||||    
T  9461642 ttttgttcactctgaaatttcggtgaaaaacggcaacgtccgctgcctatacctttttgtcg 9461581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 377 - 513
Target Start/End: Complemental strand, 12990677 - 12990541
Alignment:
Q  377 tgtgaattaatcacaacattgcacaactcttcaataatgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatataaggaaat 476  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||    
T  12990677 tgtgaattagtcacaacattgcacaactcttaaataatgatagtaacttaaataacttaaactagagaaagatttgaagttctaaactagataaggagat 12990578  T
Q  477 aacttatgtaatttatgatcaaatatgcactaaaaat 513  Q
    || |||||||||||||||||||||||| | |||||||    
T  12990577 aaattatgtaatttatgatcaaatatgtattaaaaat 12990541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 379 - 572
Target Start/End: Complemental strand, 34664939 - 34664746
Alignment:
Q  379 tgaattaatcacaacattgcacaactcttcaataatgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatataaggaaataa 478  Q
    ||||||||| |||||||||||||||| || ||||||||||||||| |||||||||||||||| ||| |||| ||||||||||||||| ||||| | ||||    
T  34664939 tgaattaattacaacattgcacaacttttaaataatgatagtaacgtaaataacttaaactatagacagatatggagttctaaactagataagaagataa 34664840  T
Q  479 c-ttatgtaatttatgatcaaatatgcactaaaaatataattttcatctatatcaattgaaaaaatatttggattctatgtctattgtcatgaac 572  Q
    | |||||||||||||||||||||| | ||| ||||||| |||||||||||| |||||||||| |||||     ||||||||||||||||||||||    
T  34664839 cgttatgtaatttatgatcaaatacgtact-aaaatatgattttcatctatctcaattgaaacaatatccaatttctatgtctattgtcatgaac 34664746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 480 - 622
Target Start/End: Original strand, 24699906 - 24700049
Alignment:
Q  480 ttatgtaatttatgatcaaatatgcactaaaaatataattttcatctatatcaattgaaaaaatatttggattctatgtctattgtc-atgaacagaann 578  Q
    ||||||||| ||| |||||||||  || ||||||||||||||||||||| ||||||||||||||||  || || |  |||||||||| ||||  | |       
T  24699906 ttatgtaatatattatcaaatatatacgaaaaatataattttcatctatctcaattgaaaaaatatccgggttttgggtctattgtcaatgacgacatct 24700005  T
Q  579 nnnnngctgccgtaacggtgtttcgtcgtgatttttgttcactc 622  Q
         || ||||||||||||||||||||||||||||||||||||    
T  24700006 attttgccgccgtaacggtgtttcgtcgtgatttttgttcactc 24700049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 377 - 542
Target Start/End: Original strand, 14081718 - 14081874
Alignment:
Q  377 tgtgaattaatcacaacattgcacaactcttcaataatgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatataaggaaat 476  Q
    |||| |||||||||||||||||| |||| || ||||||||  | |||||||||||||||||||||||| |||||     ||||||| || |||| || ||    
T  14081718 tgtgcattaatcacaacattgcataacttttaaataatga--gcaacttaaataacttaaactagagatagatt-----ttctaaattagataatgagat 14081810  T
Q  477 aac--ttatgtaatttatgatcaaatatgcactaaaaatataattttcatctatatcaattgaaaaaa 542  Q
    |||  | ||||||||    |||||||||  ||||||||| | |||||||||||| |||||||||||||    
T  14081811 aacattaatgtaatt----atcaaatatatactaaaaatttgattttcatctatctcaattgaaaaaa 14081874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 622 - 661
Target Start/End: Original strand, 32617851 - 32617890
Alignment:
Q  622 cggtgaaaaacggtaacgtccactacctatacctttttgt 661  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  32617851 cggtgaaaaacggtaacgtccgctacctatacctttttgt 32617890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 627 - 659
Target Start/End: Complemental strand, 12990217 - 12990185
Alignment:
Q  627 aaaaacggtaacgtccactacctataccttttt 659  Q
    |||||||||||||||||||||||||||||||||    
T  12990217 aaaaacggtaacgtccactacctataccttttt 12990185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 148; Significance: 9e-78; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 312 - 663
Target Start/End: Original strand, 23489907 - 23490273
Alignment:
Q  312 cgcgatcgcatataggattttgcgatttcgatcgttacgggtgttgcgatacggattacggttgttg-----tgaattaatcacaacattgcacaactct 406  Q
    |||| |||| ||||||||||||||||| ||  ||||| |||||||||| |||||||  |||||||||     ||||||||||||||||||| ||||||||    
T  23489907 cgcggtcgcgtataggattttgcgattccggccgttatgggtgttgcggtacggatg-cggttgttgcggtgtgaattaatcacaacattgtacaactct 23490005  T
Q  407 tcaataatgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatataaggaaataacttatgtaatttatgatcaaatatgcac 506  Q
    | |||| ||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||    
T  23490006 taaatactgatagtaacttagacaacataaactagagaaagatttggagttctaaactagataaggagataacttatgtaatttatgatcaaatatgtac 23490105  T
Q  507 taaaaatataattttcatctatatcaattgaaaaaatatttggattctatgtctattgtcatgaacagaa--nnnnnnngctgccgtaacggtgtttcgt 604  Q
     |||||||| |||||||||||| ||||||||||||||||  |||| |||||||||||||||||||| | |         || ||||||||  ||||||||    
T  23490106 gaaaaatatgattttcatctatctcaattgaaaaaatatccggatgctatgtctattgtcatgaacggcatttttttttgcggccgtaacaatgtttcgt 23490205  T
Q  605 cgtgatttttgttcactc---------ggtgaaaaacggtaacgtccactacctatacctttttgtcg 663  Q
    ||||||||||||||||||         ||||||||| |||||| ||  ||||||||||||||||||||    
T  23490206 cgtgatttttgttcactctgtaaaaatggtgaaaaatggtaacttcggctacctatacctttttgtcg 23490273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 13396947 - 13396884
Alignment:
Q  377 tgtgaattaatcacaacattgcacaactcttcaataatgatagtaacttaaataacttaaacta 440  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||  ||||||||||||||||    
T  13396947 tgtgaattaatcacaacattacacaactcttaaataatgatagtaaggtaaataacttaaacta 13396884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 13402245 - 13402182
Alignment:
Q  377 tgtgaattaatcacaacattgcacaactcttcaataatgatagtaacttaaataacttaaacta 440  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||  ||||||||||||||||    
T  13402245 tgtgaattaatcacaacattacacaactcttaaataatgatagtaaggtaaataacttaaacta 13402182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 404 - 528
Target Start/End: Original strand, 7154302 - 7154427
Alignment:
Q  404 tcttcaataatgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatataaggaaata-acttatgtaatttatgatcaaatat 502  Q
    |||| |||||||||| || | |||||||||||||| | ||| |||||| ||||||| ||  | ||||||| ||| | ||||||||| |||||||||||||    
T  7154302 tcttaaataatgataataccgtaaataacttaaaccatagatagattttgagttctgaatcagataaggagatataattatgtaatatatgatcaaatat 7154401  T
Q  503 gcactaaaaatataattttcatctat 528  Q
    | | ||||||||| ||||||||||||    
T  7154402 gtattaaaaatatgattttcatctat 7154427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 377 - 428
Target Start/End: Complemental strand, 14370846 - 14370795
Alignment:
Q  377 tgtgaattaatcacaacattgcacaactcttcaataatgatagtaacttaaa 428  Q
    |||||||||||||||||||||||||||||||   |||||||| |||||||||    
T  14370846 tgtgaattaatcacaacattgcacaactcttacttaatgataataacttaaa 14370795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 482 - 541
Target Start/End: Original strand, 14867365 - 14867424
Alignment:
Q  482 atgtaatttatgatcaaatatgcactaaaaatataattttcatctatatcaattgaaaaa 541  Q
    |||||||||||| ||||||||| ||||||||| | ||||||||| || ||||||||||||    
T  14867365 atgtaatttatgttcaaatatgtactaaaaatgtgattttcatccatctcaattgaaaaa 14867424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 148; Significance: 9e-78; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 344 - 658
Target Start/End: Original strand, 47363672 - 47363991
Alignment:
Q  344 cgttacgggtgttgcgatacggattacggttgt-----tgtgaattaatcacaacattgcacaactcttcaataatgatagtaacttaaataacttaaac 438  Q
    |||||||||||||||||||   ||| |||||||     ||||||||||||| |||||||||||| |||| |||||||||| |||||||||||||||||||    
T  47363672 cgttacgggtgttgcgatataaattgcggttgtcttggtgtgaattaatcaaaacattgcacaagtcttaaataatgataataacttaaataacttaaac 47363771  T
Q  439 tagagaaagatttggagttctaaactatataaggaaataacttatgtaatttatgatcaaatatgcactaaaaatataattttcatct-atatcaattga 537  Q
    |||||||||||||| |||||||||||| ||||||| |||||||||||||| |||||||||||||| |||||||||||  ||||||||| || ||||||||    
T  47363772 tagagaaagatttgaagttctaaactagataaggagataacttatgtaatctatgatcaaatatgtactaaaaatatgcttttcatctaatctcaattga 47363871  T
Q  538 aaaaatatttggattctatgtctattgtcatgaacagaannnnnnngctgccgtaacggtgtttcgtcgtgatttttgttcactcggtgaaaaacggtaa 637  Q
    ||||||||  ||||||||||||||||||||||||| | |       || | |||| ||||||||||||||||||||||| ||||   | |||||||||||    
T  47363872 aaaaatatccggattctatgtctattgtcatgaacggcaattttttgcggtcgtatcggtgtttcgtcgtgatttttgtccactttat-aaaaacggtaa 47363970  T
Q  638 cgtccactacctatacctttt 658  Q
    ||||| |||||||||| ||||    
T  47363971 cgtccgctacctatacttttt 47363991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 377 - 572
Target Start/End: Original strand, 25635910 - 25636106
Alignment:
Q  377 tgtgaattaatcacaacattgcacaactcttcaataatgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatataaggaaat 476  Q
    ||||||||||||||||||||||||| ||||| |||||||||| |||  |||||||||||||||| ||| |||||||||||||||||||| | ||||| ||    
T  25635910 tgtgaattaatcacaacattgcacacctcttaaataatgataataatgtaaataacttaaactaaagatagatttggagttctaaactagacaaggagat 25636009  T
Q  477 aac-ttatgtaatttatgatcaaatatgcactaaaaatataattttcatctatatcaattgaaaaaatatttggattctatgtctattgtcatgaac 572  Q
    ||| |||||||||||||||| ||||||| |||||| |||| |||||||||||| |||||||||||||||   ||||| | ||| |||||||||||||    
T  25636010 aacattatgtaatttatgattaaatatgtactaaagatatgattttcatctatttcaattgaaaaaatacccggattatgtgtttattgtcatgaac 25636106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 377 - 539
Target Start/End: Original strand, 39653463 - 39653626
Alignment:
Q  377 tgtgaattaatcacaacattgcacaactcttcaataatgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatataaggaaat 476  Q
    |||||||||||||||| ||| |||||||||| ||||||||||| ||| |||||||||||||||||| | | | |||||||||||||||| |||| || ||    
T  39653463 tgtgaattaatcacaatattccacaactcttaaataatgatagcaacgtaaataacttaaactagatataaagttggagttctaaactagataaagagat 39653562  T
Q  477 aac-ttatgtaatttatgatcaaatatgcactaaaaatataattttcatctatatcaattgaaa 539  Q
    ||| |||||||||||||||||||||||| ||||||||||| || ||||||||| ||||||||||    
T  39653563 aacattatgtaatttatgatcaaatatgtactaaaaatatgatgttcatctatttcaattgaaa 39653626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 433 - 545
Target Start/End: Original strand, 10493472 - 10493584
Alignment:
Q  433 ttaaactagagaaagatttggagttctaaactatataaggaaataac-ttatgtaatttatgatcaaatatgcactaaaaatataattttcatctatatc 531  Q
    ||||||||||||  ||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||| | ||||||| || ||    
T  10493472 ttaaactagagatggatttggaggtctaaactatataaggagataacattatgtaatttatgatcaaatatgcattaaaaatatga-tttcatccatctc 10493570  T
Q  532 aattgaaaaaatat 545  Q
    ||||||||||||||    
T  10493571 aattgaaaaaatat 10493584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 377 - 573
Target Start/End: Complemental strand, 33049289 - 33049083
Alignment:
Q  377 tgtgaattaatcacaacattgcacaactcttcaataatg-atagtaacttaaataacttaaactagagaaagatttggagttctaaactatataa----- 470  Q
    ||||||||||||| ||||||||||||||||| ||||||| ||| ||||||||||||||| || |||||| ||||||| |||| ||||||| ||||         
T  33049289 tgtgaattaatcaaaacattgcacaactcttaaataatgtataataacttaaataacttgaaatagagatagatttgaagtt-taaactagataaagagc 33049191  T
Q  471 -----ggaaataac-ttatgtaatttatgatcaaatatgcactaaaaatataattttcatctatatcaattgaaaaaatatttggattctatgtctattg 564  Q
         ||| ||||| || ||||||||||| ||||||||| ||||||||| | ||||||||| || |||||||| |||||| | ||||||| |||||||||    
T  33049190 ataaaggagataaccttctgtaatttatgttcaaatatgtactaaaaatgtgattttcatccatctcaattga-aaaataatgggattctctgtctattg 33049092  T
Q  565 tcatgaaca 573  Q
    |||||||||    
T  33049091 tcatgaaca 33049083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 10493376 - 10493439
Alignment:
Q  377 tgtgaattaatcacaacattgcacaactcttcaataatgatagtaacttaaataacttaaacta 440  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  10493376 tgtgaattaatcacaacattgcacaactcttaaataatgatagtaacgtaaataacttaaacta 10493439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 377 - 444
Target Start/End: Original strand, 7493070 - 7493137
Alignment:
Q  377 tgtgaattaatcacaacattgcacaactcttcaataatgatagtaacttaaataacttaaactagaga 444  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||| ||||||| ||||||||||||    
T  7493070 tgtgaattaatcacaacattacacaactcttaaataatgatagtaacgtaaataatttaaactagaga 7493137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 31743052 - 31742971
Alignment:
Q  377 tgtgaattaatcacaacattgcacaactcttcaataatg-atagtaacttaaataacttaaactagagaaagatttggagtt 457  Q
    |||||||||||||||||||||||||  |||| ||||||| ||| |||||||||||||||||| |||||| ||||||| ||||    
T  31743052 tgtgaattaatcacaacattgcacagttcttaaataatgtataataacttaaataacttaaattagagatagatttgaagtt 31742971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 448 - 569
Target Start/End: Complemental strand, 45435484 - 45435363
Alignment:
Q  448 atttggagttctaaactatataaggaaataac-ttatgtaatttatgatcaaatatgcactaaaaatataattttcatctatatcaattgaaaaaatatt 546  Q
    ||||| |||||||||||| |||| || ||||| |||||||||||||||||||||||| |||||||| | ||  || || ||| ||||||||||||||||     
T  45435484 atttgaagttctaaactagataaagagataacattatgtaatttatgatcaaatatgtactaaaaaaaaaaaatt-atatatctcaattgaaaaaatatc 45435386  T
Q  547 tggattctatgtctattgtcatg 569  Q
    | |||||| ||| ||||| ||||    
T  45435385 tagattctgtgtttattggcatg 45435363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 389 - 463
Target Start/End: Original strand, 39614647 - 39614722
Alignment:
Q  389 acaacattgcacaactcttcaataatg-atagtaacttaaataacttaaactagagaaagatttggagttctaaac 463  Q
    |||||||||| ||| |||| ||||||| ||| |||||||||||||||||| |||||| | ||||| |||| |||||    
T  39614647 acaacattgcgcaagtcttaaataatgtataataacttaaataacttaaattagagatatatttgaagttttaaac 39614722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 422
Target Start/End: Complemental strand, 45435587 - 45435542
Alignment:
Q  377 tgtgaattaatcacaacattgcacaactcttcaataatgatagtaa 422  Q
    ||||||||||| |||| |||||||||||||| |||||| |||||||    
T  45435587 tgtgaattaataacaatattgcacaactcttaaataataatagtaa 45435542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 3e-56; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 309 - 570
Target Start/End: Complemental strand, 41283726 - 41283456
Alignment:
Q  309 ggtcgcgatcgcatataggattttgcgatttcgatcgttacgggtgttgcgatacggattacggttgt-----tgtgaattaatcacaacattgcacaac 403  Q
    ||||||| |||| |||||||||| | |||||||  | ||  |||||||| |||||||| || ||||||     |||||||||||||||||||||||||||    
T  41283726 ggtcgcggtcgcttataggatttcgtgatttcggccattttgggtgttgtgatacggagtatggttgtcgtggtgtgaattaatcacaacattgcacaac 41283627  T
Q  404 tcttcaataatgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatataaggaaataacttatgtaatttatgatcaaatatg 503  Q
    | || ||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||| ||||||||||||| || ||    
T  41283626 ttttgaataaagatagtaacataaataacttaaactagagaaagatttgaagttctaaactagataaggagataacttat-taatttatgatcagatttg 41283528  T
Q  504 cactaaaaatataattttcatctatatcaattg-----aaaaaatatttggattctatgtctattgtcatga 570  Q
     |||||||||   |||||||||||| |||||||     ||||||||| |||||| |||||||||||||||||    
T  41283527 tactaaaaatgggattttcatctatctcaattgaagaaaaaaaatatctggattttatgtctattgtcatga 41283456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 377 - 569
Target Start/End: Original strand, 13424646 - 13424835
Alignment:
Q  377 tgtgaattaatcacaacattgcacaactcttcaataatgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatat-aaggaaa 475  Q
    ||||||||||||||||||||||||||||||| ||||||||    ||||||||||||||||| ||||||||||||| || ||||||| || || ||||| |    
T  13424646 tgtgaattaatcacaacattgcacaactcttaaataatga----aacttaaataacttaaaatagagaaagatttagaattctaaaatagattaaggaga 13424741  T
Q  476 taacttatgtaatttatgatcaaatatgcactaaaaatataattttcatctatatcaattgaaaaaatatttggattctatgtctattgtcatg 569  Q
    ||||||| || ||||||||||||||||| ||||||||||| |||||||| ||| ||||||||||||||||  |||||||||||||| |||||||    
T  13424742 taacttacgtgatttatgatcaaatatgtactaaaaatattattttcatttatttcaattgaaaaaatatccggattctatgtctactgtcatg 13424835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 377 - 573
Target Start/End: Original strand, 39426097 - 39426293
Alignment:
Q  377 tgtgaattaatcacaacattgcacaactcttcaataatgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatataaggaaat 476  Q
    ||||||||||| ||||||||||||||||| |  ||| |||||||||  ||||||||||||| || ||| | ||||||| |||||||||||||||||| ||    
T  39426097 tgtgaattaattacaacattgcacaactcatacatattgatagtaatgtaaataacttaaa-tatagatatatttgga-ttctaaactatataaggagat 39426194  T
Q  477 aac-ttatgtaatttatgatcaaatatgcactaaaa-atataattttcatctatatcaattgaaaaaatatttggattctatgtctattgtcatgaaca 573  Q
     || |||||||||||||||||||||||| ||||||| |||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  39426195 gacattatgtaatttatgatcaaatatgtactaaaatatatgattttcatctatcttaattgaaaaaatatttggattctatgtctattgtcatgaaca 39426293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 378 - 572
Target Start/End: Original strand, 22927072 - 22927268
Alignment:
Q  378 gtgaattaatcacaacattgcacaactcttcaataatgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatataaggaaata 477  Q
    ||||||||||||||||||||| |||||||| |||||||| |||||| |||||||||||||||||||| ||||| |  ||||||||||| | || || |||    
T  22927072 gtgaattaatcacaacattgcccaactcttaaataatgaaagtaacataaataacttaaactagagatagattcgaggttctaaactagacaatgagata 22927171  T
Q  478 acttatgtaatttatgatcaaa--tatgcactaaaaatataattttcatctatatcaattgaaaaaatatttggattctatgtctattgtcatgaac 572  Q
    || ||||| |||||||||||||  | || || |||||||| |||||||||||| ||||||||||||||||  ||||| |||||||||||||||||||    
T  22927172 acatatgtgatttatgatcaaatgtgtgtacaaaaaatatgattttcatctatctcaattgaaaaaatatccggattttatgtctattgtcatgaac 22927268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 311 - 545
Target Start/End: Complemental strand, 36491720 - 36491489
Alignment:
Q  311 tcgcgatcgcatataggattttgcgatttcgatcgttacgggtgttgcgatacggattacggttgt-----tgtgaattaatcacaacattgcacaactc 405  Q
    |||||||||| ||||||||||||||||||| |  ||||||| ||||||  ||||||||||||||||     ||||||||||||| ||||||||| || ||    
T  36491720 tcgcgatcgcgtataggattttgcgatttcaactgttacggatgttgcactacggattacggttgtcacggtgtgaattaatcataacattgcaaaattc 36491621  T
Q  406 ttcaataatgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatataaggaaataacttatgtaatttatgatcaaatatgca 505  Q
    || ||| ||||||||||  |||||||| ||||||||||| |||||| ||||||||||||| || |||||  |||         ||||||| ||||||| |    
T  36491620 ttaaatgatgatagtaaagtaaataacataaactagagatagattttgagttctaaactagatgaggaaccaac--------attatgattaaatatgta 36491529  T
Q  506 ctaaaaatataattttcatctatatcaattgaaaaaatat 545  Q
    |||||||||| |||||||||||| | ||||||||||||||    
T  36491528 ctaaaaatatgattttcatctatcttaattgaaaaaatat 36491489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 414 - 572
Target Start/End: Original strand, 16341461 - 16341618
Alignment:
Q  414 tgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatataaggaaataacttatgtaatttat--gatcaaatatgcactaaaa 511  Q
    |||||||||||| |||||||||||||||||||| || |||| |||||||||| ||||| |     ||||||||||||||  ||||||||||| |||||||    
T  16341461 tgatagtaactttaataacttaaactagagaaatatatggaattctaaactagataagca-----cttatgtaatttatatgatcaaatatgtactaaaa 16341555  T
Q  512 atataattttcatctatatcaattg--aaaaaatatttggattctatgtctattgtcatgaac 572  Q
    ||||  ||||||||||| |||||||  |||||||||  |||||||||||||||||||||||||    
T  16341556 atatgtttttcatctatctcaattgaaaaaaaatatccggattctatgtctattgtcatgaac 16341618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 428 - 573
Target Start/End: Complemental strand, 19967612 - 19967472
Alignment:
Q  428 ataacttaaactagagaaagatttggagttctaaactatataaggaaataacttatgtaatttatgatcaaatatgcactaaaaatataattttcatcta 527  Q
    ||||||||||||| |||||||||||||||||||||||| | |||||   |||||| ||||||||||||     ||| ||||||||||| |||||||| ||    
T  19967612 ataacttaaactaaagaaagatttggagttctaaactagacaaggagtcaacttaggtaatttatgat-----atgtactaaaaatatgattttcatata 19967518  T
Q  528 tatcaattgaaaaaatatttggattctatgtctattgtcatgaaca 573  Q
    | ||||||||||||||||  ||||||||||||| ||||| ||||||    
T  19967517 tctcaattgaaaaaatatccggattctatgtctgttgtcgtgaaca 19967472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 377 - 452
Target Start/End: Original strand, 20141544 - 20141620
Alignment:
Q  377 tgtgaattaatcacaacattgcacaactcttcaataatg-atagtaacttaaataacttaaactagagaaagatttg 452  Q
    ||||||||||||||||||  |||| |||||| ||||||| ||| ||||||||| |||||||| |||||| |||||||    
T  20141544 tgtgaattaatcacaacaacgcactactcttaaataatgtataataacttaaacaacttaaattagagatagatttg 20141620  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 622 - 662
Target Start/End: Complemental strand, 41283373 - 41283333
Alignment:
Q  622 cggtgaaaaacggtaacgtccactacctatacctttttgtc 662  Q
    ||||||||||||||||||||| |||||||||| ||||||||    
T  41283373 cggtgaaaaacggtaacgtccgctacctatacttttttgtc 41283333  T

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Target: chr3 (Bit Score: 102; Significance: 3e-50; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 376 - 571
Target Start/End: Original strand, 11783412 - 11783609
Alignment:
Q  376 ttgtgaattaatcacaacattgcacaactcttcaataatgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatataaggaaa 475  Q
    ||||||| |||| ||||||||||||||||||| ||||||||||||||| |||| ||||||||| ||||| |||||||||||||||||||| | ||||| |    
T  11783412 ttgtgaagtaattacaacattgcacaactcttaaataatgatagtaacataaagaacttaaacaagagatagatttggagttctaaactagacaaggaga 11783511  T
Q  476 taac-ttatgtaatttatgatcaaatatgcactaaaaatataattttcatctatatcaattg-aaaaaatatttggattctatgtctattgtcatgaa 571  Q
     ||| || ||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |||||||||  ||| ||||| ||||||| ||||||    
T  11783512 caacattgtgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattgaaaaaaatatccggagtctatttctattgccatgaa 11783609  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 380 - 572
Target Start/End: Complemental strand, 7299267 - 7299074
Alignment:
Q  380 gaattaatcacaacattgcacaactcttcaataatgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatataaggaaataac 479  Q
    ||||||| |||||||||| ||||||||| ||||| ||||||||| |||||||||||||||||||| |||||| || ||||||| || ||||||| |||||    
T  7299267 gaattaaccacaacattgtacaactcttaaataacgatagtaacgtaaataacttaaactagagatagattt-gaattctaaagtagataaggagataac 7299169  T
Q  480 -ttatgtaatttatgatcaaatatgcactaaaaatataattttcatc-tatatcaattgaaaaaatatttggattctatgtctattgtcatgaac 572  Q
     |||||||||||||||| ||||||| ||| |||||||  |||||||| ||| ||||||||||||||||  ||||| | | |||| ||||||||||    
T  7299168 attatgtaatttatgattaaatatgtacttaaaatatggttttcatcgtatctcaattgaaaaaatatccggattttgtctctagtgtcatgaac 7299074  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 480 - 528
Target Start/End: Original strand, 21926545 - 21926593
Alignment:
Q  480 ttatgtaatttatgatcaaatatgcactaaaaatataattttcatctat 528  Q
    |||||||||||||||| ||||||| ||| ||||||| ||||||||||||    
T  21926545 ttatgtaatttatgattaaatatgtactgaaaatatgattttcatctat 21926593  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 414
Target Start/End: Complemental strand, 53527228 - 53527191
Alignment:
Q  377 tgtgaattaatcacaacattgcacaactcttcaataat 414  Q
    |||||||||||||||||||||||||||| || ||||||    
T  53527228 tgtgaattaatcacaacattgcacaacttttaaataat 53527191  T

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Target: chr6 (Bit Score: 100; Significance: 4e-49; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 377 - 562
Target Start/End: Complemental strand, 9177755 - 9177566
Alignment:
Q  377 tgtgaattaatcacaacattgcacaactcttcaataatgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatataaggaaat 476  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||  |   || ||    
T  9177755 tgtgaattaatcacaacattgcacaactcttgaataatgatagtaacgtaaataacttaaactaaagatagatttggagttctaaactaggt---gagat 9177659  T
Q  477 aac-ttatgtaatttatga------tcaaatatgcactaaaaatataattttcatctatatcaattgaaaaaatatttggattctatgtctat 562  Q
    ||| |||||||||||||||      ||||||||| ||||||||||| ||||||||| || ||||||||||||||||| |||||||||||||||    
T  9177658 aacattatgtaatttatgatcaaattcaaatatgtactaaaaatatgattttcatcaatctcaattgaaaaaatattcggattctatgtctat 9177566  T

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Target: chr6; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 294 - 479
Target Start/End: Original strand, 26660535 - 26660725
Alignment:
Q  294 aaggttttagttaacggtcgcgatcgcatataggattttgcgatttcgatcgttacgggtgttgcgatacggattacggttgt-----tgtgaattaatc 388  Q
    |||||||||  ||||||| ||| |||  ||||||||||  | ||||||  ||||||| ||||||||||||| ||| |||||||     ||||||||||||    
T  26660535 aaggttttaaataacggttgcggtcgagtataggatttcacaatttcggccgttacgagtgttgcgatacgaattgcggttgtcacggtgtgaattaatc 26660634  T
Q  389 acaacattgcacaactcttcaataatgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatataaggaaataac 479  Q
    ||||||||||||||||||| ||| |  |||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |||||    
T  26660635 acaacattgcacaactcttaaatcacaatagtaacttaaataatttaaactaaagaaagatttggagttctaaactatacaaggagataac 26660725  T

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Target: chr6; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 294 - 479
Target Start/End: Original strand, 26766506 - 26766696
Alignment:
Q  294 aaggttttagttaacggtcgcgatcgcatataggattttgcgatttcgatcgttacgggtgttgcgatacggattacggttgt-----tgtgaattaatc 388  Q
    |||||||||  ||||||| ||| |||  ||||||||||  | ||||||  ||||||| ||||||||||||| ||| |||||||     ||||||||||||    
T  26766506 aaggttttaaataacggttgcggtcgagtataggatttcacaatttcggccgttacgagtgttgcgatacgaattgcggttgtcacggtgtgaattaatc 26766605  T
Q  389 acaacattgcacaactcttcaataatgatagtaacttaaataacttaaactagagaaagatttggagttctaaactatataaggaaataac 479  Q
    ||||||||||||||||||| ||| |  |||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |||||    
T  26766606 acaacattgcacaactcttaaatcacaatagtaacttaaataatttaaactaaagaaagatttggagttctaaactatacaaggagataac 26766696  T

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Target: chr6; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 459 - 572
Target Start/End: Complemental strand, 32296445 - 32296331
Alignment:
Q  459 taaactatataaggaaataac-ttatgtaatttatgatcaaatatgcactaaaaatataattttcatctatatcaattgaaaaaatatttggattctatg 557  Q
    ||||||||||||||| ||| | |||||||| ||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||  |||| | ||    
T  32296445 taaactatataaggagataccattatgtaacttatgatcaaatatgtactaaaaatatgattttcatctatctcaattgaaaaaatattcagattttgtg 32296346  T
Q  558 tctattgtcatgaac 572  Q
    |||||||||||||||    
T  32296345 tctattgtcatgaac 32296331  T

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Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 448 - 572
Target Start/End: Complemental strand, 10117259 - 10117131
Alignment:
Q  448 atttggagttctaaactatataaggaaataacttatgtaatttatgatcaaatatgcactaaaaatataatt-----ttcatctatatcaattgaaaaaa 542  Q
    |||||||||||||||||| ||||||| || | |||||||||||||||||||||||| ||||||||||| |||     ||||||||| ||||||| |||||    
T  10117259 atttggagttctaaactagataaggagatta-ttatgtaatttatgatcaaatatgtactaaaaatatgattttcaattcatctatctcaattggaaaaa 10117161  T
Q  543 tatttggattctatgtctattgtcatgaac 572  Q
    |||  ||||||| |||||||||||||||||    
T  10117160 tatccggattctgtgtctattgtcatgaac 10117131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 482 - 572
Target Start/End: Complemental strand, 22509138 - 22509049
Alignment:
Q  482 atgtaatttatgatcaaatatgcactaaaaatataattttcatctatatcaattgaaaaaatatttggattctatgtctattgtcatgaac 572  Q
    |||||||||||| ||||| ||| ||||||||| | ||||||||| || | |||||  ||||||| |||||||| |||| ||||||||||||    
T  22509138 atgtaatttatgttcaaacatgtactaaaaatgtgattttcatccatcttaattg-gaaaatatctggattctctgtccattgtcatgaac 22509049  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 591 - 640
Target Start/End: Complemental strand, 32296291 - 32296243
Alignment:
Q  591 taacggtgtttcgtcgtgatttttgttcactcggtgaaaaacggtaacgt 640  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||||||    
T  32296291 taacggtgtttcatcgtgatttttgttcactctgt-aaaaacggtaacgt 32296243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 624 - 658
Target Start/End: Original strand, 8169234 - 8169268
Alignment:
Q  624 gtgaaaaacggtaacgtccactacctatacctttt 658  Q
    |||||||||||||||||| ||||||||||||||||    
T  8169234 gtgaaaaacggtaacgtcgactacctatacctttt 8169268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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