View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7781_high_13 (Length: 213)

Name: NF7781_high_13
Description: NF7781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7781_high_13
NF7781_high_13
[»] chr7 (6 HSPs)
chr7 (1-126)||(7240947-7241072)
chr7 (120-179)||(7240881-7240936)
chr7 (178-213)||(7240718-7240753)
chr7 (34-64)||(1885587-1885617)
chr7 (38-79)||(2002077-2002118)
chr7 (33-65)||(38134420-38134452)
[»] chr6 (2 HSPs)
chr6 (26-79)||(9024176-9024229)
chr6 (33-61)||(17168907-17168935)
[»] chr1 (3 HSPs)
chr1 (33-77)||(30847722-30847766)
chr1 (34-64)||(24462285-24462315)
chr1 (33-78)||(3921680-3921725)
[»] chr2 (3 HSPs)
chr2 (33-79)||(18570985-18571031)
chr2 (38-78)||(37402085-37402125)
chr2 (33-65)||(11308018-11308050)
[»] chr4 (6 HSPs)
chr4 (33-78)||(31552458-31552503)
chr4 (33-77)||(18513243-18513287)
chr4 (35-64)||(10164869-10164898)
chr4 (33-65)||(5654605-5654637)
chr4 (33-65)||(10546161-10546193)
chr4 (33-65)||(34589720-34589752)
[»] chr3 (3 HSPs)
chr3 (33-65)||(12704671-12704703)
chr3 (34-64)||(14338498-14338528)
chr3 (33-62)||(41319327-41319356)
[»] chr5 (6 HSPs)
chr5 (33-72)||(16881149-16881188)
chr5 (38-79)||(38533151-38533192)
chr5 (33-62)||(38749580-38749609)
chr5 (33-65)||(4344755-4344787)
chr5 (33-65)||(11596469-11596501)
chr5 (33-65)||(43208288-43208320)
[»] chr8 (4 HSPs)
chr8 (27-65)||(12597798-12597836)
chr8 (25-62)||(10441208-10441245)
chr8 (33-82)||(34201043-34201092)
chr8 (33-65)||(29198493-29198525)


Alignment Details
Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 7241072 - 7240947
Alignment:
Q  1 acaccagacacgacacaacaacaataatgatgatttgaaaaaatgacataattcaatgtaatcatctgtatcagtgtcggtgctaatgtaatcacatgta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| || ||||||||||||||||||    
T  7241072 acaccagacacgacacaacaacaataatgatgatttgaaaaaatgacataattcaatgtaatcacctatatcagtgtcagtcctaatgtaatcacatgta 7240973  T
Q  101 tcagtatgtatcatattggtgtcgga 126  Q
    ||||||||||||||||||||||||||    
T  7240972 tcagtatgtatcatattggtgtcgga 7240947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 7240936 - 7240881
Alignment:
Q  120 tgtcggataccagacatgcctagtgtactaactatccctctattattaccctctaaaata 179  Q
    ||||||||||| ||||||||||||||||||    ||||||||||||||||||||||||||    
T  7240936 tgtcggataccggacatgcctagtgtacta----tccctctattattaccctctaaaata 7240881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 213
Target Start/End: Complemental strand, 7240753 - 7240718
Alignment:
Q  178 tagtattataacactatgacatagcaaagtcaaatt 213  Q
    ||||||||||||||||||||||||||||||||||||    
T  7240753 tagtattataacactatgacatagcaaagtcaaatt 7240718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 64
Target Start/End: Original strand, 1885587 - 1885617
Alignment:
Q  34 tttgaaaaaatgacataattcaatgtaatca 64  Q
    |||||||||||||||||||||||||||||||    
T  1885587 tttgaaaaaatgacataattcaatgtaatca 1885617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 2002077 - 2002118
Alignment:
Q  38 aaaaaatgacataattcaatgtaatcatctgtatcagtgtcg 79  Q
    |||||||||||||| |||||||||| || |||||||||||||    
T  2002077 aaaaaatgacataaatcaatgtaattatatgtatcagtgtcg 2002118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 38134452 - 38134420
Alignment:
Q  33 atttgaaaaaatgacataattcaatgtaatcat 65  Q
    |||||| ||||||||||||||||||||||||||    
T  38134452 atttgagaaaatgacataattcaatgtaatcat 38134420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 9024229 - 9024176
Alignment:
Q  26 aatgatgatttgaaaaaatgacataattcaatgtaatcatctgtatcagtgtcg 79  Q
    |||||| |||||| |||||||||||||||||||||||||| ||| |||||||||    
T  9024229 aatgataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcg 9024176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 61
Target Start/End: Original strand, 17168907 - 17168935
Alignment:
Q  33 atttgaaaaaatgacataattcaatgtaa 61  Q
    |||||||||||||||||||||||||||||    
T  17168907 atttgaaaaaatgacataattcaatgtaa 17168935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 30847766 - 30847722
Alignment:
Q  33 atttgaaaaaatgacataattcaatgtaatcatctgtatcagtgt 77  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||    
T  30847766 atttgaaaaaatgacataattcaatgtaatcatatgtgtcagtgt 30847722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 64
Target Start/End: Complemental strand, 24462315 - 24462285
Alignment:
Q  34 tttgaaaaaatgacataattcaatgtaatca 64  Q
    |||||||||||||||||||||||||||||||    
T  24462315 tttgaaaaaatgacataattcaatgtaatca 24462285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 3921680 - 3921725
Alignment:
Q  33 atttgaaaaaatgacataattcaatgtaatcatctgtatcagtgtc 78  Q
    |||||| ||||||||||||||||||||||||||  || ||||||||    
T  3921680 atttgagaaaatgacataattcaatgtaatcatgcgtgtcagtgtc 3921725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 18570985 - 18571031
Alignment:
Q  33 atttgaaaaaatgacataattcaatgtaatcatctgtatcagtgtcg 79  Q
    |||||| |||||||||||||||||||||||||| ||| |||||||||    
T  18570985 atttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcg 18571031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 37402125 - 37402085
Alignment:
Q  38 aaaaaatgacataattcaatgtaatcatctgtatcagtgtc 78  Q
    |||||||||||||||||||||||||||| ||| ||||||||    
T  37402125 aaaaaatgacataattcaatgtaatcatatgtgtcagtgtc 37402085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 11308050 - 11308018
Alignment:
Q  33 atttgaaaaaatgacataattcaatgtaatcat 65  Q
    ||||||||||||||||||||||| |||||||||    
T  11308050 atttgaaaaaatgacataattcagtgtaatcat 11308018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 31552503 - 31552458
Alignment:
Q  33 atttgaaaaaatgacataattcaatgtaatcatctgtatcagtgtc 78  Q
    |||| ||||||||||||||| |||||||||||| ||||||||||||    
T  31552503 atttcaaaaaatgacataatccaatgtaatcatatgtatcagtgtc 31552458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 18513287 - 18513243
Alignment:
Q  33 atttgaaaaaatgacataattcaatgtaatcatctgtatcagtgt 77  Q
    |||||| |||||||||||||||||||||||||| ||| |||||||    
T  18513287 atttgagaaaatgacataattcaatgtaatcatatgtgtcagtgt 18513243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 10164898 - 10164869
Alignment:
Q  35 ttgaaaaaatgacataattcaatgtaatca 64  Q
    ||||||||||||||||||||||||||||||    
T  10164898 ttgaaaaaatgacataattcaatgtaatca 10164869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 5654637 - 5654605
Alignment:
Q  33 atttgaaaaaatgacataattcaatgtaatcat 65  Q
    |||||| ||||||||||||||||||||||||||    
T  5654637 atttgagaaaatgacataattcaatgtaatcat 5654605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 10546161 - 10546193
Alignment:
Q  33 atttgaaaaaatgacataattcaatgtaatcat 65  Q
    |||||| ||||||||||||||||||||||||||    
T  10546161 atttgagaaaatgacataattcaatgtaatcat 10546193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 34589752 - 34589720
Alignment:
Q  33 atttgaaaaaatgacataattcaatgtaatcat 65  Q
    |||||| ||||||||||||||||||||||||||    
T  34589752 atttgagaaaatgacataattcaatgtaatcat 34589720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 12704703 - 12704671
Alignment:
Q  33 atttgaaaaaatgacataattcaatgtaatcat 65  Q
    |||||||||||||||||||||||||||||||||    
T  12704703 atttgaaaaaatgacataattcaatgtaatcat 12704671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 64
Target Start/End: Complemental strand, 14338528 - 14338498
Alignment:
Q  34 tttgaaaaaatgacataattcaatgtaatca 64  Q
    |||||||||||||||||||||||||||||||    
T  14338528 tttgaaaaaatgacataattcaatgtaatca 14338498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 62
Target Start/End: Complemental strand, 41319356 - 41319327
Alignment:
Q  33 atttgaaaaaatgacataattcaatgtaat 62  Q
    ||||||||||||||||||||||||||||||    
T  41319356 atttgaaaaaatgacataattcaatgtaat 41319327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 16881149 - 16881188
Alignment:
Q  33 atttgaaaaaatgacataattcaatgtaatcatctgtatc 72  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  16881149 atttgaaaaaatgacataatttaatgtaatcatatgtatc 16881188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 38533192 - 38533151
Alignment:
Q  38 aaaaaatgacataattcaatgtaatcatctgtatcagtgtcg 79  Q
    ||||||||||||| || ||||||||||| |||||||||||||    
T  38533192 aaaaaatgacatatttgaatgtaatcatgtgtatcagtgtcg 38533151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 62
Target Start/End: Complemental strand, 38749609 - 38749580
Alignment:
Q  33 atttgaaaaaatgacataattcaatgtaat 62  Q
    ||||||||||||||||||||||||||||||    
T  38749609 atttgaaaaaatgacataattcaatgtaat 38749580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 4344755 - 4344787
Alignment:
Q  33 atttgaaaaaatgacataattcaatgtaatcat 65  Q
    ||||||||||||||||||||||| |||||||||    
T  4344755 atttgaaaaaatgacataattcagtgtaatcat 4344787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 11596501 - 11596469
Alignment:
Q  33 atttgaaaaaatgacataattcaatgtaatcat 65  Q
    |||||| ||||||||||||||||||||||||||    
T  11596501 atttgagaaaatgacataattcaatgtaatcat 11596469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 43208320 - 43208288
Alignment:
Q  33 atttgaaaaaatgacataattcaatgtaatcat 65  Q
    |||||| ||||||||||||||||||||||||||    
T  43208320 atttgagaaaatgacataattcaatgtaatcat 43208288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 12597798 - 12597836
Alignment:
Q  27 atgatgatttgaaaaaatgacataattcaatgtaatcat 65  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  12597798 atgatgattttaaaaaataacataattcaatgtaatcat 12597836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 10441208 - 10441245
Alignment:
Q  25 taatgatgatttgaaaaaatgacataattcaatgtaat 62  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  10441208 taatgataatttgagaaaatgacataattcaatgtaat 10441245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 34201092 - 34201043
Alignment:
Q  33 atttgaaaaaatgacataattcaatgtaatcatctgtatcagtgtcggtg 82  Q
    |||||| ||||||||||||||||||||||| || ||||| ||||| ||||    
T  34201092 atttgagaaaatgacataattcaatgtaattatatgtataagtgttggtg 34201043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 29198525 - 29198493
Alignment:
Q  33 atttgaaaaaatgacataattcaatgtaatcat 65  Q
    |||||| ||||||||||||||||||||||||||    
T  29198525 atttgagaaaatgacataattcaatgtaatcat 29198493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University