View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7781_high_3 (Length: 493)

Name: NF7781_high_3
Description: NF7781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7781_high_3
NF7781_high_3
[»] chr2 (13 HSPs)
chr2 (250-478)||(43213278-43213506)
chr2 (251-478)||(41654657-41654884)
chr2 (320-478)||(43227884-43228042)
chr2 (320-478)||(43206374-43206532)
chr2 (320-477)||(43224083-43224240)
chr2 (319-478)||(41650117-41650276)
chr2 (12-118)||(43213046-43213152)
chr2 (12-77)||(41650643-41650708)
chr2 (12-105)||(43206111-43206204)
chr2 (12-86)||(41654992-41655066)
chr2 (12-86)||(43223910-43223984)
chr2 (181-226)||(43213215-43213260)
chr2 (12-77)||(43227443-43227508)
[»] chr8 (4 HSPs)
chr8 (320-456)||(5073616-5073752)
chr8 (12-77)||(5072737-5072802)
chr8 (334-368)||(31839458-31839492)
chr8 (334-371)||(26262851-26262888)


Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 250 - 478
Target Start/End: Original strand, 43213278 - 43213506
Alignment:
Q  250 ttgcatgcatgtggaaagtaataataattgaaaaccaaaacattcagaaagtaaaaatgtggacttacgtacctgcataagaagagcatccatgtcagct 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43213278 ttgcatgcatgtggaaagtaataataattgaaaaccaaaacattcagaaagtaaaaatgtggacttacgtacctgcataagaagagcatccatctcagct 43213377  T
Q  350 ctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtttatattgaacacccaactcatccaattttg 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| | ||||| || ||||| |||||||    
T  43213378 ctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactacaactggatgtttatatgggacacctaattcatctaattttg 43213477  T
Q  450 ttcttataagcttactggtttcaaattct 478  Q
    |||||||||||||||||||||||||||||    
T  43213478 ttcttataagcttactggtttcaaattct 43213506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 251 - 478
Target Start/End: Complemental strand, 41654884 - 41654657
Alignment:
Q  251 tgcatgcatgtggaaagtaataataattgaaaaccaaaacattcagaaagtaaaaatgtggacttacgtacctgcataagaagagcatccatgtcagctc 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  41654884 tgcatgcatgtggaaagtaataataattgaaaaccaaaacattcagaaagtaaaaatgtggacctacgtacctgcataagaagagcatccatttcagctc 41654785  T
Q  351 taagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtttatattgaacacccaactcatccaattttgt 450  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||| ||||||||||||||    
T  41654784 tgagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtttatatgtaacacccaattcatccaattttgt 41654685  T
Q  451 tcttataagcttactggtttcaaattct 478  Q
    |||||||||||||||||| |||||||||    
T  41654684 tcttataagcttactggtctcaaattct 41654657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 320 - 478
Target Start/End: Original strand, 43227884 - 43228042
Alignment:
Q  320 acctgcataagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt 419  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43227884 acctgcatgagaagagcatccatgtcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt 43227983  T
Q  420 tatattgaacacccaactcatccaattttgttcttataagcttactggtttcaaattct 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  43227984 tatattgaacacccaactcatccaattttgttcttataagcttactagtctcaaattct 43228042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 320 - 478
Target Start/End: Original strand, 43206374 - 43206532
Alignment:
Q  320 acctgcataagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt 419  Q
    ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43206374 acctgaataagaagagcatccatatcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt 43206473  T
Q  420 tatattgaacacccaactcatccaattttgttcttataagcttactggtttcaaattct 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  43206474 tatattgaacacccaactcatccaattttgttcttataagcttactagtctcaaattct 43206532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 320 - 477
Target Start/End: Original strand, 43224083 - 43224240
Alignment:
Q  320 acctgcataagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt 419  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43224083 acctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt 43224182  T
Q  420 tatattgaacacccaactcatccaattttgttcttataagcttactggtttcaaattc 477  Q
    ||||||||||||| || |||||||||| ||||||||||||||||||||| ||||||||    
T  43224183 tatattgaacacctaattcatccaattctgttcttataagcttactggtctcaaattc 43224240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 319 - 478
Target Start/End: Complemental strand, 41650276 - 41650117
Alignment:
Q  319 tacctgcataagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgt 418  Q
    ||||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41650276 tacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgt 41650177  T
Q  419 ttatattgaacacccaactcatccaattttgttcttataagcttactggtttcaaattct 478  Q
    |||||| | ||||| || |||||||||||||||| |||||||||||| |||| |||||||    
T  41650176 ttatatgggacacctaattcatccaattttgttcgtataagcttactagttttaaattct 41650117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 43213046 - 43213152
Alignment:
Q  12 catcatgaccacatccatgcacctttccaggtactttactcttatgctcccactccaccaattcctgaagttaacaacaacaaaaaatcatcaacgaatt 111  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43213046 catcatgaccacatccatgcatctttccaggtactttactcttatgctcccactccaccaattcctgaagttaacaacaacaaaaaatcatcaacgaatt 43213145  T
Q  112 tagagtg 118  Q
    |||||||    
T  43213146 tagagtg 43213152  T

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Target: chr2; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 41650708 - 41650643
Alignment:
Q  12 catcatgaccacatccatgcacctttccaggtactttactcttatgctcccactccaccaattcct 77  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41650708 catcatgaccacatgcatgcatctttccaggtactttactcttatgctcccactccaccaattcct 41650643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 43206111 - 43206204
Alignment:
Q  12 catcatgaccacatccatgcacctttccaggtactttactcttatgctcccactccaccaattcctgaagttaacaacaacaaaaaatcatcaa 105  Q
    |||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||| ||||| |  | || |||||||||||| ||||||    
T  43206111 catcatgaccacatgcatgcatctttccaggtactttacttttatgctcccactccaccatttcctaacatcaaaaacaacaaaaaaacatcaa 43206204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 41655066 - 41654992
Alignment:
Q  12 catcatgaccacatccatgcacctttccaggtactttactcttatgctcccactccaccaattcctgaagttaac 86  Q
    ||||||| |||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  41655066 catcatggccacatgcatgcatctttccaggcactttactcttatgctcccactccaccaattcctaaggttaac 41654992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 43223910 - 43223984
Alignment:
Q  12 catcatgaccacatccatgcacctttccaggtactttactcttatgctcccactccaccaattcctgaagttaac 86  Q
    ||||||| |||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  43223910 catcatggccacatgcatgcatctttccaggcactttactcttatgctcccactccaccaattcctaaggttaac 43223984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 43213215 - 43213260
Alignment:
Q  181 gaagattgaacttggagtgagaaatttttcatttttctttttcatc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  43213215 gaagattgaacttggagtgagaaatttttcatttttctttttcatc 43213260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 43227443 - 43227508
Alignment:
Q  12 catcatgaccacatccatgcacctttccaggtactttactcttatgctcccactccaccaattcct 77  Q
    |||||||||||||| |||||| ||||||||||||||| || ||||||||||| |||| ||||||||    
T  43227443 catcatgaccacatgcatgcatctttccaggtactttgcttttatgctcccattccaacaattcct 43227508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 320 - 456
Target Start/End: Original strand, 5073616 - 5073752
Alignment:
Q  320 acctgcataagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt 419  Q
    |||||||||  |||||||||||| |||||||| | ||| ||||||||||  |  |||||||||||| ||||||| ||||| || | ||||||||||| ||    
T  5073616 acctgcatagaaagagcatccatatcagctcttaaagcaacaaaaggagacaatccagttcctatgaaaccaatgacaccagtgattgcaactggatatt 5073715  T
Q  420 tatattgaacacccaactcatccaattttgttcttat 456  Q
    ||||  ||| || ||  | |||||||| |||||||||    
T  5073716 tatagggaatactcagtttatccaattctgttcttat 5073752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 5072737 - 5072802
Alignment:
Q  12 catcatgaccacatccatgcacctttccaggtactttactcttatgctcccactccaccaattcct 77  Q
    |||||||||||||  |||||| |||||||||||| |||||| | |||||||||||||||| |||||    
T  5072737 catcatgaccacacgcatgcatctttccaggtaccttactcctgtgctcccactccaccatttcct 5072802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 368
Target Start/End: Original strand, 31839458 - 31839492
Alignment:
Q  334 agcatccatgtcagctctaagagcgacaaaaggag 368  Q
    |||||||||||||||||||||||| ||||||||||    
T  31839458 agcatccatgtcagctctaagagcaacaaaaggag 31839492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 371
Target Start/End: Complemental strand, 26262888 - 26262851
Alignment:
Q  334 agcatccatgtcagctctaagagcgacaaaaggaggaa 371  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  26262888 agcatccatgtcagctctaagagcaacaaatggaggaa 26262851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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