View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7781_high_4 (Length: 357)
Name: NF7781_high_4
Description: NF7781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7781_high_4 |
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| [»] scaffold0046 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 23462536 - 23462183
Alignment:
| Q |
18 |
aaaaagtcgatcaatggtaaaagaagaagatttggcagaggaaaattctaagatgaaaataaaattactcatcaaagaagatatgattgacaagttgaaa |
117 |
Q |
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| T |
23462536 |
aaaaagtcgatcaatggtaaaagaagaagatttggcagaggaaaattctaagatgaaaataaaattactcatcaaagaagatatgattgacaagttgaaa |
23462437 |
T |
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| Q |
118 |
ggcgtaattgaagatttgaaagctgaaattgaagaggtgaaggctgaaa---------------atgctgggtttgataaggcagtcaagcaaattttag |
202 |
Q |
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| T |
23462436 |
ggcgtaattgaagatttgaaagctgaaattgaagaggtgaaggctgaaattccagtgcagtacaatgctgggtttgataaggcagtcaagcaaattttag |
23462337 |
T |
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| Q |
203 |
tttcaatatctgaacttaaacattaaccaagttggattgtctaaaattattcatatttactttggatcgaaaatttagcttaatgaagtttattgtaagg |
302 |
Q |
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| T |
23462336 |
tttcaatatctgaacttaaacattgaccaagttggattctctaaaattattcatatttactttggatcgaaagtttagcttaatgaagtttattgtaaga |
23462237 |
T |
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| Q |
303 |
taatgccgtcttaaatttatgtattggcttaaccaaggtctctgctactccact |
356 |
Q |
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| T |
23462236 |
taatgccctcttaaatttatgtattggcttaaccaaggtcttggctacgccact |
23462183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 166 - 327
Target Start/End: Complemental strand, 24965274 - 24965106
Alignment:
| Q |
166 |
aatgctgggtttgataaggcagtcaagcaaattttagtttcaatatctgaacttaaacattaa-------ccaagttggattgtctaaaattattcatat |
258 |
Q |
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| T |
24965274 |
aatgctgggtttgataaggcggtcaagcaaattttagtttcaatatctaaacttaaaagttaaaccttgaccaagttggattgtttataattattcatat |
24965175 |
T |
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| Q |
259 |
ttactttggatcgaaaatttagcttaatgaagtttattgtaaggtaatgccgtcttaaatttatgtatt |
327 |
Q |
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| T |
24965174 |
ttcttttggatcgaaattttaccttgatgaagttcattgtgaggaaatgccctcttaaacttatgtatt |
24965106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 23449390 - 23449466
Alignment:
| Q |
30 |
aatggtaaaagaagaagatttggcagaggaaaattctaagatgaaaataaaattactcatcaaagaagatatgattg |
106 |
Q |
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| T |
23449390 |
aatggaaaaagaagaaaacttgatagaggaaaattctaagattcaaataaaattacttgtcaaagaagatattattg |
23449466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 124 - 327
Target Start/End: Complemental strand, 74638 - 74431
Alignment:
| Q |
124 |
attgaagatttgaaagctgaaattgaagaggtgaaggctgaaa---------------atgctgggtttgataaggcagtcaagcaaattttagtttcaa |
208 |
Q |
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| T |
74638 |
attgaagatttgaaagctgaaattgaagaggtgaagactgaaattccagtgcagcacaatgctgggtttgataagatggtcaagcaaattttagtttcaa |
74539 |
T |
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| Q |
209 |
tatctgaacttaaacattaaccaagttggattgtctaaaattattcatatttactttggatcgaaaatttagcttaatgaagtttattgtaaggtaatgc |
308 |
Q |
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| T |
74538 |
tatcc-----------ttgaccaagttggattgtttataattattcatatttcttttggatcgaaattttaccttgatgaagttcattgtgaggaaatgc |
74450 |
T |
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| Q |
309 |
cgtcttaaatttatgtatt |
327 |
Q |
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| T |
74449 |
cctcttaaacttatgtatt |
74431 |
T |
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