View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7781_high_6 (Length: 312)
Name: NF7781_high_6
Description: NF7781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7781_high_6 |
 | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
| [»] scaffold0274 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 28)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 17 - 299
Target Start/End: Complemental strand, 19400621 - 19400339
Alignment:
| Q |
17 |
catatgcaaccatatcagtcaagttatagacgcatttcggtatagatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19400621 |
catatgcaaccatatcagtcaagttatagacgcatttcggtatagatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaa |
19400522 |
T |
|
| Q |
117 |
taattgtgttggaatagtcccttcaaattggttagctctcagtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19400521 |
taattgtgttggaatagtcccttcaaattggttagctctcagtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattt |
19400422 |
T |
|
| Q |
217 |
tctcccaagatcaagacttccaattgtctccaatcagagaggtgtcccagagcttcaccagatagcctattactccacaggtt |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19400421 |
tctcccaagatcaagacttccaattgtctccaatcagagaggtgtcccagagcttcaccagatagcctattacgccacaggtt |
19400339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 299
Target Start/End: Complemental strand, 18109337 - 18109052
Alignment:
| Q |
14 |
catcatatgcaaccatatcagtcaagttatagacgcatttcggtatagatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagatt |
113 |
Q |
| |
|
||||| ||| |||||||| ||||||||||||||| || || |||||||||| |||||||||||||||||||||||||||||||||||| |||| |||| | |
|
|
| T |
18109337 |
catcaaatgtaaccatatgagtcaagttatagacacactttggtatagatcttgaaagtttgttttgtgcaaggtccaaatgaaacaagtaaggaagaat |
18109238 |
T |
|
| Q |
114 |
gaataattgtgttggaatagtcccttcaaattggttagctctcagtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattca |
213 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||| || ||||||||||| ||| | ||||||||| |
|
|
| T |
18109237 |
gaataattgtgttggaatagttccttcaaattggttagctctcaatatgacaacttctaatttttgtgataaattgattggtattgttgcagaaaattca |
18109138 |
T |
|
| Q |
214 |
ttttctcccaagatcaagacttccaattgtctccaatcagagaggtgtcccagagcttcaccagatagcctattactccacaggtt |
299 |
Q |
| |
|
|||||||||||| ||| || |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
18109137 |
ttttctcccaagttcatgatttccaattgtctccaatcagagaggtgtcctagaacttcaccagatagcctattactccaaaggtt |
18109052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 24 - 299
Target Start/End: Complemental strand, 17950720 - 17950445
Alignment:
| Q |
24 |
aaccatatcagtcaagttatagacgcatttcggtatagatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgt |
123 |
Q |
| |
|
|||||||| ||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
17950720 |
aaccatatgagtcaagttatagacacactctggtatagatcctgaaagtttgttttgtgcaaggtccaaatgaaacaagtaaggaagattgaataattgt |
17950621 |
T |
|
| Q |
124 |
gttggaatagtcccttcaaattggttagctctcagtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctccca |
223 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||| ||||||||||||||| |||||||| || ||||||||||| ||| | ||||||||||||||||||| |
|
|
| T |
17950620 |
gttggaatagttccttctaattggttagctctcaatatgacaacttctaatttttgtgataaattgattggtattgttgcagaaaattcattttctccca |
17950521 |
T |
|
| Q |
224 |
agatcaagacttccaattgtctccaatcagagaggtgtcccagagcttcaccagatagcctattactccacaggtt |
299 |
Q |
| |
|
|| ||| || |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
17950520 |
agttcatgatttccaattgtctccaatcagagaggtgtcctagaacttcaccagatagcctattactccaaaggtt |
17950445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 24 - 295
Target Start/End: Complemental strand, 25463938 - 25463667
Alignment:
| Q |
24 |
aaccatatcagtcaagttatagacgcatttcggtatagatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgt |
123 |
Q |
| |
|
|||||||||||||||||| ||| ||| || || | |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
25463938 |
aaccatatcagtcaagttgtagttgcactttggcagagatcctgaaagtttgttacgtgcaaggtccaaatgaaacaaataagtgagattgaatagttgt |
25463839 |
T |
|
| Q |
124 |
gttggaatagtcccttcaaattggttagctctcagtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctccca |
223 |
Q |
| |
|
| ||||||| |||||||||||||||| ||||||| |||||| |||||||||| | ||| | ||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
25463838 |
ggtggaatattcccttcaaattggtttgctctcaatatgaccacttctaagtatagtggcatgttcattggtatggttccagaaaattcattttctccca |
25463739 |
T |
|
| Q |
224 |
agatcaagacttccaattgtctccaatcagagaggtgtcccagagcttcaccagatagcctattactccaca |
295 |
Q |
| |
|
|| ||| || |||||||||||||||||||||||||||| | ||| |||||||||||||||||||| |||||| |
|
|
| T |
25463738 |
agttcatgatttccaattgtctccaatcagagaggtgtactagaacttcaccagatagcctattattccaca |
25463667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 24 - 260
Target Start/End: Complemental strand, 19425575 - 19425339
Alignment:
| Q |
24 |
aaccatatcagtcaagttatagacgcatttcggtatagatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgt |
123 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19425575 |
aaccatatcagtcaagttatagacacattctggtatagatcctgaaagtttgtttagagcaaggtccaaatgaaacaaataaggaagattgaataattgc |
19425476 |
T |
|
| Q |
124 |
gttggaatagtcccttcaaattggttagctctcagtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctccca |
223 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||| |||||||| |||||||| ||||| ||||||||| |||| ||||||| ||||||||||| |
|
|
| T |
19425475 |
cttgggatagtcccttcaaattggttagctctcaatatgacgacttctaatttttgtgataagttcattggtatgattcctgaaaatttattttctccca |
19425376 |
T |
|
| Q |
224 |
agatcaagacttccaattgtctccaatcagagaggtg |
260 |
Q |
| |
|
| |||| || | ||||||| |||||||||||||||| |
|
|
| T |
19425375 |
aaatcatgatctgcaattgtttccaatcagagaggtg |
19425339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 24 - 295
Target Start/End: Complemental strand, 18116853 - 18116582
Alignment:
| Q |
24 |
aaccatatcagtcaagttatagacgcatttcggtatagatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgt |
123 |
Q |
| |
|
|||||||| |||||||||||| | ||| | || ||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
18116853 |
aaccatatgagtcaagttataaatgcactccgttatagatcctgaaagtttgttatgtgcaaggtccaaatgaaacaaattagtgagattgaataattgt |
18116754 |
T |
|
| Q |
124 |
gttggaatagtcccttcaaattggttagctctcagtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctccca |
223 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||| |||||||| | ||||| | ||| | |||||||||||| ||||||||||||||||||| |
|
|
| T |
18116753 |
gttggaatactcccttcaaattggttacctctcagtatgactacttctaaatattgtggtatgttcaatggtatggttccagaaaattcattttctccca |
18116654 |
T |
|
| Q |
224 |
agatcaagacttccaattgtctccaatcagagaggtgtcccagagcttcaccagatagcctattactccaca |
295 |
Q |
| |
|
|| ||| || || ||||||||||||||| ||||||| | | ||| | |||||||| || ||||||||||||| |
|
|
| T |
18116653 |
agttcatgaattgcaattgtctccaatcggagaggtttactagaacctcaccagacagtctattactccaca |
18116582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 24 - 295
Target Start/End: Complemental strand, 19462077 - 19461804
Alignment:
| Q |
24 |
aaccatatcagtcaagttatagacgcatttcggtatagatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgt |
123 |
Q |
| |
|
|||||||| |||||||||||| | ||| | || |||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
19462077 |
aaccatatgagtcaagttataaatgcactccgtcatagatcctgaaagtttgttatgtgcaaggtccaaatgaaacaaattagtgagattgaataattgt |
19461978 |
T |
|
| Q |
124 |
gttggaatagtcccttcaaattggttagctctcag--tatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctcc |
221 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||| ||||| |||||||| | ||||| | ||| | |||||||||||| ||||||||||||||||| |
|
|
| T |
19461977 |
gttggaatactcccttcaaattggttacctctcagtatatgaatacttctaaatattgtggtatgttcaatggtatggttccagaaaattcattttctcc |
19461878 |
T |
|
| Q |
222 |
caagatcaagacttccaattgtctccaatcagagaggtgtcccagagcttcaccagatagcctattactccaca |
295 |
Q |
| |
|
|||| ||| || || |||| |||||||||| ||||||| | | ||| | |||||||| || ||||||||||||| |
|
|
| T |
19461877 |
caagttcatgaattgcaatcgtctccaatcggagaggtttactagaacctcaccagacagtctattactccaca |
19461804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 60 - 296
Target Start/End: Complemental strand, 19381745 - 19381509
Alignment:
| Q |
60 |
agatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgtgttggaatagtcccttcaaattggttagctctcagt |
159 |
Q |
| |
|
|||||| |||| |||||| ||||||||||| || ||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||| | |
|
|
| T |
19381745 |
agatccagaaaatttgttatgtgcaaggtctaagtgaaacaaataagagagattgaataattgtggtggaatattcccttcaaattggttagctctcaat |
19381646 |
T |
|
| Q |
160 |
atgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctcccaagatcaagacttccaattgtctccaatcagagaggt |
259 |
Q |
| |
|
||||||| ||||||||||| ||| ||||| |||||||||||||| |||||||||||||||||||| ||| || | |||| || | || ||||||||| |
|
|
| T |
19381645 |
atgacaatttctaagttttctgataagttcattggtatggttccagaaaattcattttctcccaaattcatgaatagcaatcgttttgaagcagagaggt |
19381546 |
T |
|
| Q |
260 |
gtcccagagcttcaccagatagcctattactccacag |
296 |
Q |
| |
|
|| | ||| |||||||||| ||||||||||||||||| |
|
|
| T |
19381545 |
gtgctagaacttcaccagacagcctattactccacag |
19381509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 24 - 300
Target Start/End: Complemental strand, 19376510 - 19376234
Alignment:
| Q |
24 |
aaccatatcagtcaagttatagacgcatttcggtatagatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgt |
123 |
Q |
| |
|
|||||||| ||||||||| |||| ||| | || | |||||||||||||||||| ||||||||||| || ||||||||||||| |||||||||| |||| |
|
|
| T |
19376510 |
aaccatattagtcaagttgtagatgcagtgtggaaaagatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataagagagattgaatagttgt |
19376411 |
T |
|
| Q |
124 |
gttggaatagtcccttcaaattggttagctctcagtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctccca |
223 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||| | | |||||||||||| | ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19376410 |
tgtggaatagtcccttcaaatttattagctctcaatatgaccaaatataagttttgtgacatcttgattggtatggttccagaaaattcattttctccca |
19376311 |
T |
|
| Q |
224 |
agatcaagacttccaattgtctccaatcagagaggtgtcccagagcttcaccagatagcctattactccacaggttc |
300 |
Q |
| |
|
| |||||| || |||||| | || |||||||||| | ||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
19376310 |
aattcaagaattgcaattgatttgaagcagagaggtgagctagaacttcaccagatagcctattactccataggttc |
19376234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 33 - 300
Target Start/End: Original strand, 18872999 - 18873266
Alignment:
| Q |
33 |
agtcaagttatagacgcatttcggtatagatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgtgttggaata |
132 |
Q |
| |
|
||||||||| ||||| || || || | |||||||||||||||||| |||||||||||||| |||||||||| || ||||| |||| ||||| || |||| |
|
|
| T |
18872999 |
agtcaagttgtagacacagtttggcaaagatcctgaaagtttgttatgtgcaaggtccaagtgaaacaaattagagagattaaatagttgtggtgaaata |
18873098 |
T |
|
| Q |
133 |
gtcccttcaaattggttagctctcagtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctcccaagatcaaga |
232 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||| ||||||||| | ||| ||||||| |||| |||||||||||||||||||| |||||| |
|
|
| T |
18873099 |
ttcccttcaaattggttagctctcaatatgactacttctaggttttgtgacatcatgaatggtatgtttccagaaaattcattttctcccaaattcaaga |
18873198 |
T |
|
| Q |
233 |
cttccaattgtctccaatcagagaggtgtcccagagcttcaccagatagcctattactccacaggttc |
300 |
Q |
| |
|
| ||| ||| |||| ||||||||||| | || |||||||||||||||||||||||||||||||| |
|
|
| T |
18873199 |
tctgcaactgtttccattcagagaggtgatcttgaacttcaccagatagcctattactccacaggttc |
18873266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 33 - 221
Target Start/End: Complemental strand, 16678089 - 16677901
Alignment:
| Q |
33 |
agtcaagttatagacgcatttcggtatagatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgtgttggaata |
132 |
Q |
| |
|
|||||||||||||||| | || || |||||||||||||||||||| |||||||| ||||||||||||||| ||| ||||||||||| ||| ||||||| |
|
|
| T |
16678089 |
agtcaagttatagacgtactttggcatagatcctgaaagtttgttatgtgcaagatccaaatgaaacaaagaagagagattgaataactgtagtggaata |
16677990 |
T |
|
| Q |
133 |
gtcccttcaaattggttagctctcagtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctcc |
221 |
Q |
| |
|
| |||||||| ||||||||||||| ||| |||||||||||||||||||| | || |||||||||||||| ||||||||||||||||| |
|
|
| T |
16677989 |
cttccttcaaaatggttagctctcaatataacaacttctaagttttgtgacatcttaattggtatggttccagaaaattcattttctcc |
16677901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 24 - 299
Target Start/End: Original strand, 17726649 - 17726924
Alignment:
| Q |
24 |
aaccatatcagtcaagttatagacgcatttcggtatagatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgt |
123 |
Q |
| |
|
||||||||| |||||||| |||||||| || || ||||| |||||||||||||| |||||||||||||| || |||||| ||| |||||||||| |||| |
|
|
| T |
17726649 |
aaccatatctgtcaagttgtagacgcactttggcatagaacctgaaagtttgttatgtgcaaggtccaagtgcaacaaagaagagagattgaatagttgt |
17726748 |
T |
|
| Q |
124 |
gttggaatagtcccttcaaattggttagctctcagtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctccca |
223 |
Q |
| |
|
| ||||||| ||||||||| || ||| ||| || |||||| | |||||||| |||||| | | | ||||||| |||| ||||||||||||||||||| |
|
|
| T |
17726749 |
gcaggaataggcccttcaaaatgattacctcccaatatgaccatttctaagtgttgtgacatctctactggtatgtttccagaaaattcattttctccca |
17726848 |
T |
|
| Q |
224 |
agatcaagacttccaattgtctccaatcagagaggtgtcccagagcttcaccagatagcctattactccacaggtt |
299 |
Q |
| |
|
| || | | || ||||||| || |||||||||||||||| ||| |||||||||| |||||||||||||| ||||| |
|
|
| T |
17726849 |
aaataatgtgttgcaattgtttcaaatcagagaggtgtcctagaacttcaccagacagcctattactccataggtt |
17726924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 33 - 300
Target Start/End: Complemental strand, 17942833 - 17942566
Alignment:
| Q |
33 |
agtcaagttatagacgcatttcggtatagatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgtgttggaata |
132 |
Q |
| |
|
||||||||| |||||||| | || | |||||||||||||||||| | ||||||||| || ||||||||||| | |||||||||| |||| |||||| |
|
|
| T |
17942833 |
agtcaagttgtagacgcagtgtggcaaagatcctgaaagtttgttatttgcaaggtctaagtgaaacaaataggagagattgaatagttgttgcggaata |
17942734 |
T |
|
| Q |
133 |
gtcccttcaaattggttagctctcagtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctcccaagatcaaga |
232 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||| |||||||||||| ||| |||||||||||||||| |||| |||||||||||||| ||| || |
|
|
| T |
17942733 |
gtcccttcaaattggttagctctcaatatgaccacttgtaagttttgtgataagctgattggtatggttccaaaaaactcattttctcccaaattcatga |
17942634 |
T |
|
| Q |
233 |
cttccaattgtctccaatcagagaggtgtcccagagcttcaccagatagcctattactccacaggttc |
300 |
Q |
| |
|
| |||| || | || ||||||||||| ||| |||||||||| |||||||||||||| |||||| |
|
|
| T |
17942633 |
ataacaatcgttttgaagcagagaggtgtgttagaacttcaccagacagcctattactccataggttc |
17942566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 24 - 299
Target Start/End: Original strand, 19027878 - 19028153
Alignment:
| Q |
24 |
aaccatatcagtcaagttatagacgcatttcggtatagatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgt |
123 |
Q |
| |
|
||||||||| |||||||| |||||||| || || ||||| |||||||||||||| |||||||||||||| || |||||| ||| |||||||||| |||| |
|
|
| T |
19027878 |
aaccatatctgtcaagttgtagacgcactttggcatagaacctgaaagtttgttatgtgcaaggtccaagtgcaacaaagaagagagattgaatagttgt |
19027977 |
T |
|
| Q |
124 |
gttggaatagtcccttcaaattggttagctctcagtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctccca |
223 |
Q |
| |
|
| ||||||| ||||||||| || ||| ||| || |||||| | |||||||| |||||| | | | ||||||| |||| ||||||||||||||||||| |
|
|
| T |
19027978 |
gcaggaataggcccttcaaaatgattacctcccaatatgaccatttctaagtgttgtgacatctctactggtatgtttccagaaaattcattttctccca |
19028077 |
T |
|
| Q |
224 |
agatcaagacttccaattgtctccaatcagagaggtgtcccagagcttcaccagatagcctattactccacaggtt |
299 |
Q |
| |
|
| || | | || ||||||| || |||||||||||||||| ||| |||||||||| |||||||||||||| ||||| |
|
|
| T |
19028078 |
aaataatgtgttgcaattgtttcaaatcagagaggtgtcctagaacttcaccagacagcctattactccataggtt |
19028153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 24 - 300
Target Start/End: Complemental strand, 19334897 - 19334621
Alignment:
| Q |
24 |
aaccatatcagtcaagttatagacgcatttcggtatagatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgt |
123 |
Q |
| |
|
|||||| ||||||||||||||||| || | |||||||||||||||||||||||| ||||||||||| || | || |||||||| |||||||||| |||| |
|
|
| T |
19334897 |
aaccatttcagtcaagttatagacacaatccggtatagatcctgaaagtttgttatgtgcaaggtctaagtaaatcaaataagagagattgaatagttgt |
19334798 |
T |
|
| Q |
124 |
gttggaatagtcccttcaaattggttagctctcagtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctccca |
223 |
Q |
| |
|
||||||||||||||||||||| || ||||||| ||||| | || |||||||||||| | |||||||| |||| ||||||||||||||||||| |
|
|
| T |
19334797 |
tgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatgcttccagaaaattcattttctccca |
19334698 |
T |
|
| Q |
224 |
agatcaagacttccaattgtctccaatcagagaggtgtcccagagcttcaccagatagcctattactccacaggttc |
300 |
Q |
| |
|
| | | |||| ||||||| ||||||||||||| || | || |||||||||| |||||||||||||| |||||| |
|
|
| T |
19334697 |
aatttatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactccataggttc |
19334621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 60 - 295
Target Start/End: Complemental strand, 18166008 - 18165773
Alignment:
| Q |
60 |
agatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgtgttggaatagtcccttcaaattggttagctctcagt |
159 |
Q |
| |
|
|||||||||||||||||| | |||||||| || |||||||||| || |||||||||| ||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
18166008 |
agatcctgaaagtttgttattcgcaaggtctaagtgaaacaaattagagagattgaatatttgtggtggaatagtcccttcaaattggttagctctcaat |
18165909 |
T |
|
| Q |
160 |
atgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctcccaagatcaagacttccaattgtctccaatcagagaggt |
259 |
Q |
| |
|
||||| |||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| ||| || ||||||||| || |||| |||| || |
|
|
| T |
18165908 |
atgaccacttctaacttttgtgaaatcaaaattggtatggttccagaaaattcattttctcccaagttcatgatttccaattggttcaaatcggagaagt |
18165809 |
T |
|
| Q |
260 |
gtcccagagcttcaccagatagcctattactccaca |
295 |
Q |
| |
|
| | |||||||| |||||||||||||||||| |
|
|
| T |
18165808 |
gcaatgaaacttcaccaaatagcctattactccaca |
18165773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 33 - 226
Target Start/End: Original strand, 14895511 - 14895704
Alignment:
| Q |
33 |
agtcaagttatagacgcatttcggtatagatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgtgttggaata |
132 |
Q |
| |
|
||||||||| ||||||| ||||| | ||||||||||| |||||| |||||||||||||||||||||||| |||| |||||||||||||||| ||||||| |
|
|
| T |
14895511 |
agtcaagttgtagacgctgttcggcaaagatcctgaaaatttgttgtgtgcaaggtccaaatgaaacaaagaagtgagattgaataattgtggtggaata |
14895610 |
T |
|
| Q |
133 |
gtcccttcaaattggttagctctcagtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctcccaaga |
226 |
Q |
| |
|
|||||||||||||||||| ||||| ||| || |||| ||||| |||||| | || ||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
14895611 |
ttcccttcaaattggttagatctcaatataaccacttgtaagtattgtgacatcatggttggtatagttccataaaattcattttctcccaaga |
14895704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 24 - 300
Target Start/End: Complemental strand, 19415072 - 19414796
Alignment:
| Q |
24 |
aaccatatcagtcaagttatagacgcatttcggtatagatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgt |
123 |
Q |
| |
|
|||||||| ||||||||| ||||||| | || | |||||||||||||||||| ||||||||||| || |||||||||| || ||||| |||| ||| |
|
|
| T |
19415072 |
aaccatatgagtcaagttgtagacgctgtgtggcaaagatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaatcagagagattaaatagctgt |
19414973 |
T |
|
| Q |
124 |
gttggaatagtcccttcaaattggttagctctcagtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctccca |
223 |
Q |
| |
|
| ||||||||||||||||||| ||||| |||||| |||||| ||||||||||| ||||| | |||||||||||||||| |||||||||||||||||| |
|
|
| T |
19414972 |
ggtggaatagtcccttcaaatcggttatctctcaatatgaccacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctccca |
19414873 |
T |
|
| Q |
224 |
agatcaagacttccaattgtctccaatcagagaggtgtcccagagcttcaccagatagcctattactccacaggttc |
300 |
Q |
| |
|
| ||| |||| ||||| ||||| ||||| || || |||||||||||||||||||||||||||||||| |
|
|
| T |
19414872 |
aattcatgactcttaattgcttccaaccagagcagtacaaaggaacttcaccagatagcctattactccacaggttc |
19414796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 26 - 248
Target Start/End: Complemental strand, 18147716 - 18147494
Alignment:
| Q |
26 |
ccatatcagtcaagttatagacgcatttcggtatagatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgtgt |
125 |
Q |
| |
|
|||||||||||||||| ||||| || || || ||||| | ||||||||||| ||||||||||| || |||| |||||||| || ||||||| |||| |
|
|
| T |
18147716 |
ccatatcagtcaagttgtagacacactttggcatagaatcggaaagtttgttatgtgcaaggtctaagtgaatcaaataagagaggttgaatagttgttg |
18147617 |
T |
|
| Q |
126 |
tggaatagtcccttcaaattggttagctctcagtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctcccaag |
225 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||| ||| |||||||||||| | |||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
18147616 |
tggaatagtcccttcaaatttattagctctcaatatgaccactagtaagttttgtgacatcatgattggtatggttccagaaaattcattttctcctaag |
18147517 |
T |
|
| Q |
226 |
atcaagacttccaattgtctcca |
248 |
Q |
| |
|
||| || |||||||||| |||| |
|
|
| T |
18147516 |
ttcatgatttccaattgtttcca |
18147494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 60 - 295
Target Start/End: Complemental strand, 19465205 - 19464970
Alignment:
| Q |
60 |
agatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgtgttggaatagtcccttcaaattggttagctctcagt |
159 |
Q |
| |
|
|||||||||||||||||| | ||||||||| || ||||||||| | |||| |||| ||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
19465205 |
agatcctgaaagtttgttatttgcaaggtctaagtgaaacaaaatatggagatcaaatagttgtggtggaatagtcccttcaaattggttagctctcaat |
19465106 |
T |
|
| Q |
160 |
atgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctcccaagatcaagacttccaattgtctccaatcagagaggt |
259 |
Q |
| |
|
||||| |||||||||| |||||||| ||| ||||||||||| |||||||||||||| |||||| ||| | ||||||||| || ||| ||||| || |
|
|
| T |
19465105 |
atgaccacttctaagtcttgtgaaatcaagataggtatggttccagaaaattcattttcgcccaagttcatgttttccaattggttcaaattagagaagt |
19465006 |
T |
|
| Q |
260 |
gtcccagagcttcaccagatagcctattactccaca |
295 |
Q |
| |
|
| | | ||||||||||||||||||||||||||| |
|
|
| T |
19465005 |
gcaacgaaacttcaccagatagcctattactccaca |
19464970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 58 - 243
Target Start/End: Complemental strand, 19437812 - 19437627
Alignment:
| Q |
58 |
atagatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgtgttggaatagtcccttcaaattggttagctctca |
157 |
Q |
| |
|
||||| || ||||||||||| ||||||||||| || |||| |||||||| |||||||||| |||| ||||||||||||||||||| |||||||||| |
|
|
| T |
19437812 |
atagaaccagaaagtttgttatgtgcaaggtctaagtgaatcaaataagagagattgaatagttgttgcggaatagtcccttcaaatttattagctctca |
19437713 |
T |
|
| Q |
158 |
gtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctcccaagatcaagacttccaattgt |
243 |
Q |
| |
|
|||||| |||| |||||||||||| | |||||||||||||||| ||||||||||||||||| ||| ||| | |||||||||| |
|
|
| T |
19437712 |
atatgaccacttttaagttttgtgacatcatgattggtatggttccagaaaattcattttctcctaagttcatggtttccaattgt |
19437627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 300
Target Start/End: Complemental strand, 19394037 - 19393761
Alignment:
| Q |
24 |
aaccatatcagtcaagttatagacgcatttcggtatagatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgt |
123 |
Q |
| |
|
||||||||| |||||||| | ||| || || || | ||| ||||||||||| || |||||||| ||||||||||||| ||||| | |||||||| |||| |
|
|
| T |
19394037 |
aaccatatctgtcaagttgtcgacacactttggcacagaacctgaaagtttattatgtgcaagatccaaatgaaacatataagagatattgaatagttgt |
19393938 |
T |
|
| Q |
124 |
gttggaatagtcccttcaaattggttagctctcagtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctccca |
223 |
Q |
| |
|
||||||||| ||||||||||| || ||||||| |||||| ||| |||||||||||| | | ||||||| |||| ||||||||||||| ||||| |
|
|
| T |
19393937 |
tgtggaatagtaccttcaaattgattggctctcaatatgaccactactaagttttgtggcatcccaactggtatgtttccagaaaattcattttttccca |
19393838 |
T |
|
| Q |
224 |
agatcaagacttccaattgtctccaatcagagaggtgtcccagagcttcaccagatagcctattactccacaggttc |
300 |
Q |
| |
|
| ||| || | ||||||||||||||||||||||| | || |||||||||| ||| |||||||||| |||||| |
|
|
| T |
19393837 |
aattcatgatctgcaattgtctccaatcagagaggtttaatggaacttcaccagacagcttattactccataggttc |
19393761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 60 - 225
Target Start/End: Complemental strand, 18016874 - 18016709
Alignment:
| Q |
60 |
agatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgtgttggaatagtcccttcaaattggttagctctcagt |
159 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || ||||||||||||| ||||||||||||||| ||||||| |||||||||||| || ||||||| | |
|
|
| T |
18016874 |
agatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataagagagattgaataattgtcgtggaataatcccttcaaatttattggctctcaat |
18016775 |
T |
|
| Q |
160 |
atgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctcccaag |
225 |
Q |
| |
|
||||| ||| |||||||||||| | | ||||||| |||| ||||||||||||| ||||||| |
|
|
| T |
18016774 |
atgaccactcttaagttttgtgacatccctactggtatgtttccagaaaattcattttttcccaag |
18016709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 60 - 225
Target Start/End: Complemental strand, 19352244 - 19352079
Alignment:
| Q |
60 |
agatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgtgttggaatagtcccttcaaattggttagctctcagt |
159 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || ||||||||||||| ||||||||||||||| ||||||| |||||||||||| || ||||| | | |
|
|
| T |
19352244 |
agatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataagagagattgaataattgttgtggaataatcccttcaaatttattggctctaaat |
19352145 |
T |
|
| Q |
160 |
atgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctcccaag |
225 |
Q |
| |
|
||||| ||| ||||||||||||| | | |||||| |||| ||||||||||||||||||||| |
|
|
| T |
19352144 |
atgaccactactaagttttgtgacatccctaccggtatgtttccagaaaattcattttctcccaag |
19352079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 60 - 225
Target Start/End: Complemental strand, 19354567 - 19354402
Alignment:
| Q |
60 |
agatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgtgttggaatagtcccttcaaattggttagctctcagt |
159 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || |||||||||| || ||||| |||| |||| ||| ||| |||||||||||||||| ||||||| | |
|
|
| T |
19354567 |
agatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaattagagagattaaatagttgttgtgggatattcccttcaaattggttggctctcaat |
19354468 |
T |
|
| Q |
160 |
atgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctcccaag |
225 |
Q |
| |
|
||||| ||| |||| |||||| | ||||||||||||||||| |||||||| || |||||||| |
|
|
| T |
19354467 |
atgaccactgttaaggattgtgacattttgattggtatggttccagaaaattcgttagctcccaag |
19354402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 24 - 221
Target Start/End: Complemental strand, 18104234 - 18104037
Alignment:
| Q |
24 |
aaccatatcagtcaagttatagacgcatttcggtatagatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgt |
123 |
Q |
| |
|
|||||||| ||||||||| ||||| || || || ||||| || ||||||||||| ||||||||||| || || |||||||| |||||||||| |||| |
|
|
| T |
18104234 |
aaccatattagtcaagttgtagacacactttggcatagaaccggaaagtttgttatgtgcaaggtctaagaaaatcaaataagagagattgaatagttgt |
18104135 |
T |
|
| Q |
124 |
gttggaatagtcccttcaaattggttagctctcagtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctcc |
221 |
Q |
| |
|
|||| |||||||||||||| || ||||||| ||||| ||||||||||||||||| | | |||||| ||||| ||||||||||||||||| |
|
|
| T |
18104134 |
tgcagaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtatagttccagaaaattcattttctcc |
18104037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 19439447 - 19439374
Alignment:
| Q |
109 |
agattgaataattgtgttggaatagtcccttcaaattggttagctctcagtatgacaacttctaagttttgtga |
182 |
Q |
| |
|
|||||||||| |||| ||||||||| ||||||||||||||| |||||| ||| || ||| ||||||||||||| |
|
|
| T |
19439447 |
agattgaatagttgttgtggaatagttccttcaaattggttatctctcaatattaccactcctaagttttgtga |
19439374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 19439662 - 19439619
Alignment:
| Q |
60 |
agatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaat |
103 |
Q |
| |
|
||||||||||| |||||| |||||||||||||| |||||||||| |
|
|
| T |
19439662 |
agatcctgaaaatttgttatgtgcaaggtccaagtgaaacaaat |
19439619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 58 - 295
Target Start/End: Original strand, 3250 - 3487
Alignment:
| Q |
58 |
atagatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgtgttggaatagtcccttcaaattggttagctctca |
157 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||| | |
|
|
| T |
3250 |
atagatcctgagagtttgttatgtgcaaggtccaagtgaaacaaataagagagattgaataattgtgatggaatagtcccttcgaattggttagctctta |
3349 |
T |
|
| Q |
158 |
gtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctcccaagatcaagacttccaattgtctccaatcagagag |
257 |
Q |
| |
|
||||||||||||||| | ||||| | |||||||||||||||||| ||||| ||||||||| |||| ||| || || ||||||| ||||||||||||| |
|
|
| T |
3350 |
atatgacaacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttcttccaaattcatgaattgcaattgtttccaatcagagag |
3449 |
T |
|
| Q |
258 |
gtgtcccagagcttcaccagatagcctattactccaca |
295 |
Q |
| |
|
|||||| ||| |||||||||| ||| |||||||||||| |
|
|
| T |
3450 |
gtgtcctagaacttcaccagacagcttattactccaca |
3487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 58 - 295
Target Start/End: Complemental strand, 6257 - 6020
Alignment:
| Q |
58 |
atagatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgtgttggaatagtcccttcaaattggttagctctca |
157 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||| | |
|
|
| T |
6257 |
atagatcctgagagtttgttatgtgcaaggtccaagtgaaacaaataagagagattgaataattgtgatggaatagtcccttcgaattggttagctctta |
6158 |
T |
|
| Q |
158 |
gtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctcccaagatcaagacttccaattgtctccaatcagagag |
257 |
Q |
| |
|
||||||||||||||| | ||||| | |||||||||||||||||| ||||| ||||||||| |||| ||| || || ||||||| ||||||||||||| |
|
|
| T |
6157 |
atatgacaacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttcttccaaattcatgaattgcaattgtttccaatcagagag |
6058 |
T |
|
| Q |
258 |
gtgtcccagagcttcaccagatagcctattactccaca |
295 |
Q |
| |
|
|||||| ||| |||||||||| ||| |||||||||||| |
|
|
| T |
6057 |
gtgtcctagaacttcaccagacagcttattactccaca |
6020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 58 - 295
Target Start/End: Original strand, 2719 - 2956
Alignment:
| Q |
58 |
atagatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgtgttggaatagtcccttcaaattggttagctctca |
157 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||| | |
|
|
| T |
2719 |
atagatcctgagagtttgttatgtgcaaggtccaagtgaaacaaataagagagattgaataattgtgatggaatagtcccttcgaattggttagctctta |
2818 |
T |
|
| Q |
158 |
gtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctcccaagatcaagacttccaattgtctccaatcagagag |
257 |
Q |
| |
|
||||||||||||||| | ||||| | |||||||||||||||||| ||||| ||||||||| |||| ||| || || ||||||| ||||||||||||| |
|
|
| T |
2819 |
atatgacaacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttcttccaaattcatgaattgcaattgtttccaatcagagag |
2918 |
T |
|
| Q |
258 |
gtgtcccagagcttcaccagatagcctattactccaca |
295 |
Q |
| |
|
|||||| ||| |||||||||| ||| |||||||||||| |
|
|
| T |
2919 |
gtgtcctagaacttcaccagacagcttattactccaca |
2956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 65 - 224
Target Start/End: Complemental strand, 21470 - 21312
Alignment:
| Q |
65 |
ctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgtgttggaatagtcccttcaaattggttagctctcagtatgac |
164 |
Q |
| |
|
|||| |||||||| |||||||||| ||| ||||||||||||| |||||||||||||||| ||||||||||| ||| |||||||||||||| | |||||| |
|
|
| T |
21470 |
ctgagagtttgttatgtgcaaggttcaagtgaaacaaataagagagattgaataattgtggtggaatagtcc-ttcgaattggttagctcttaatatgac |
21372 |
T |
|
| Q |
165 |
aacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctcccaa |
224 |
Q |
| |
|
|||||||| | ||||| | |||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
21371 |
cacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttctcccaa |
21312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 24 - 221
Target Start/End: Original strand, 2709700 - 2709897
Alignment:
| Q |
24 |
aaccatatcagtcaagttatagacgcatttcggtatagatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgt |
123 |
Q |
| |
|
|||||||| | |||||||||||||||| | |||||||||||||||||||| ||||||||||||||||| ||| |||| | || ||||||||||||||| |
|
|
| T |
2709700 |
aaccatataactcaagttatagacgcactctggtatagatcctgaaagtttattttgtgcaaggtccaagtgatacaacttagagagattgaataattgt |
2709799 |
T |
|
| Q |
124 |
gttggaatagtcccttcaaattggttagctctcagtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctcc |
221 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||| ||||| || | ||| || | ||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
2709800 |
gttggaatagtccctttaaattggttagctctcaatatgagaactttcaaatcttgcgacatcttgattggtatagttccagaaaattcattttctcc |
2709897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 24 - 260
Target Start/End: Complemental strand, 15536421 - 15536185
Alignment:
| Q |
24 |
aaccatatcagtcaagttatagacgcatttcggtatagatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgt |
123 |
Q |
| |
|
|||||| | ||||||||| || ||||| | |||| |||||||||||||||||| ||||||||||| || ||||||||||||| ||||||||||||||| |
|
|
| T |
15536421 |
aaccatttgagtcaagttgtacacgcagtgtggtaaagatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataagagagattgaataattgt |
15536322 |
T |
|
| Q |
124 |
gttggaatagtcccttcaaattggttagctctcagtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctccca |
223 |
Q |
| |
|
| |||||| |||||||||||| || | ||||| |||||| ||| ||||||||||||| | |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15536321 |
ggcggaataatcccttcaaatttattggttctcaatatgaccactactaagttttgtgacatcatgattggtatggttccagaaaattcattttctccca |
15536222 |
T |
|
| Q |
224 |
agatcaagacttccaattgtctccaatcagagaggtg |
260 |
Q |
| |
|
|| ||| | || ||||||| || || |||||||||| |
|
|
| T |
15536221 |
agttcatggtttgcaattgtttcgaagcagagaggtg |
15536185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 58 - 293
Target Start/End: Complemental strand, 8460399 - 8460164
Alignment:
| Q |
58 |
atagatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgtgttggaatagtcccttcaaattggttagctctca |
157 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| || || | |||||| |||| ||||||| | |||||||||||||| ||||||| |
|
|
| T |
8460399 |
atagatcctgaaagtttgttatgtgcaaggtccaaatgaaacaaaagagggagttcgaataactgtggtggaatattgccttcaaattggttggctctca |
8460300 |
T |
|
| Q |
158 |
gtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctcccaagatcaagacttccaattgtctccaatcagagag |
257 |
Q |
| |
|
|||||| |||||||| | |||| | ||| ||||| |||||||| ||||||| ||||||||||||| | | | |||||||||| || ||||| |||| |
|
|
| T |
8460299 |
atatgaccacttctaaataccgtgacatgttcattggaatggttccagaaaattgattttctcccaagttaatcatttccaattgtttcaaatcaaagag |
8460200 |
T |
|
| Q |
258 |
gtgtcccagagcttcaccagatagcctattactcca |
293 |
Q |
| |
|
|| || || |||| |||||||||||||||||||| |
|
|
| T |
8460199 |
gtccaccggaacttcgccagatagcctattactcca |
8460164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 221
Target Start/End: Original strand, 13666098 - 13666259
Alignment:
| Q |
60 |
agatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgtgttggaatagtcccttcaaattggttagctctcagt |
159 |
Q |
| |
|
||||||||||||||| | ||||||||||| | ||||||||||||| ||||| |||| ||||| |||||| | |||||||||| || |||||| | |
|
|
| T |
13666098 |
agatcctgaaagtttcatatgtgcaaggtctaggtgaaacaaataagagagattaaatagttgtgggggaatactgccttcaaatttattttctctcaat |
13666197 |
T |
|
| Q |
160 |
atgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctcc |
221 |
Q |
| |
|
||||| |||| |||||| |||||| ||||| ||||||||| ||||||||||||||| |
|
|
| T |
13666198 |
atgaccacttgaaagtttggtgaaatcaagattgttatggttccattaaattcattttctcc |
13666259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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