View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7781_low_11 (Length: 337)
Name: NF7781_low_11
Description: NF7781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7781_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 17 - 304
Target Start/End: Complemental strand, 17933061 - 17932770
Alignment:
| Q |
17 |
gaatttgatagagctggctatgatacacttcctccnnnnnnnnnnnaacaacaaagtattattaaggtttggtctgtgtaagacgcacaaaaccagcaac |
116 |
Q |
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| T |
17933061 |
gaatttgatagagctggctatgatacacttcct---ttttttttttaacaacaaagtattattaaggtttggtctgtgtaagacgcacaaaaccagcaac |
17932965 |
T |
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| Q |
117 |
aacggtnnnnnnnnnnnntaca-------tctggcgccatatataacggctgagtatgatacactaacactacctattgatatcttgggctggatccatc |
209 |
Q |
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|||||| | | | |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
17932964 |
aacggtaaaaaaaaaaaaaaaaaaaaaaatttggcgccatatatataggctgagtatgatacactaacacttcctattgatatcttgggctggatccatc |
17932865 |
T |
|
| Q |
210 |
aacatgcttttacaataataaaatatagaaaccccnnnnnnncaatggtatttttcttgcacaaccttaaacacaagaacagcattaatacttct |
304 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
17932864 |
aacatgcttttacaataataaaatatagaaacccctttttttcaatagtatttttcttgcacaaccttaaacacaagaacatcattaatacttct |
17932770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 17 - 304
Target Start/End: Original strand, 32844872 - 32845155
Alignment:
| Q |
17 |
gaatttgatagagctggctatgatacacttcctccnnnnnnnnnnnaacaacaaagtattattaaggtttggtctgtgtaagacgcacaaaaccagcaac |
116 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32844872 |
gaatttgatagagctggctatgatacacttcct-----tttttattaacaacaaagtattattaaggtttggtctgtgtaagatgcacaaaaccagcaac |
32844966 |
T |
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| Q |
117 |
aacggtnnnnnnnnnnnntacatctggcgccatatataacggctgagtatgatacac--taacactacctattgatatcttgggctggatccatcaacat |
214 |
Q |
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| T |
32844967 |
aacggtaaaaaaaaaatac-catctggcgccatatatataggctgagtatgatacacgctaacacttcctattgatatctagggctggatccaccaacat |
32845065 |
T |
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| Q |
215 |
gcttttacaataataaaatatagaaaccccnnnnnnncaatggtatttttcttgcacaaccttaaacacaagaacagcattaatacttct |
304 |
Q |
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||||||| |||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
32845066 |
gcttttaaaataataaaatatagaaacccctttttttcaatagtatttttcttgcacaatcttaaacacaagaacaacattaatacttct |
32845155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 32831827 - 32831874
Alignment:
| Q |
257 |
gtatttttcttgcacaaccttaaacacaagaacagcattaatacttct |
304 |
Q |
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||||||||||| |||| |||||||||||||||| ||||||||||||| |
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| T |
32831827 |
gtatttttcttatacaatcttaaacacaagaacaacattaatacttct |
32831874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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