View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7781_low_13 (Length: 320)
Name: NF7781_low_13
Description: NF7781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7781_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 3659575 - 3659853
Alignment:
| Q |
18 |
caaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctttcactatatctccgtcatcg |
117 |
Q |
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| T |
3659575 |
caaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgc---------------cactatatctccgtcatcg |
3659659 |
T |
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| Q |
118 |
ctactacgtgttgatcctccactgtcctccaccagcacttcctcgtcatcttcaacaccctgataagagtccacaacatctacaactgcaaactttctat |
217 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3659660 |
ctactacgtgttgatcctccactgtcccccaccagcacttcctcgtcatcttcaacaccctgagaagagtccacaacatctacaactgcaaactttctat |
3659759 |
T |
|
| Q |
218 |
tctccaaaacctcgccttggtcatcatttgaggaacttccatctgattcacaagttcttgtgctataaacctcacaaacattaccattctctgc |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3659760 |
tctccaaaacctcgccttggtcatcatttgaggaacttccatccgattcacaagttcttgtgctataaacctcacaaacattaccattctctgc |
3659853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 3653309 - 3653449
Alignment:
| Q |
18 |
caaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctttcactatatctccgtcatcg |
117 |
Q |
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||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3653309 |
caaatcagttctgctttccattttaagcggcagtggagcagagaacagaatcttctcttggtgtgcttgaaactactctttcactatatctccgtcatcg |
3653408 |
T |
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| Q |
118 |
ctactacgtgttgatcctccactgtcctccaccagcacttc |
158 |
Q |
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| T |
3653409 |
ctactacgtgttgatcctccactgtcctccaccagaacttc |
3653449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 3649201 - 3649322
Alignment:
| Q |
18 |
caaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctttcactatatctccgtcatcg |
117 |
Q |
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||||||||||||||||||||| |||||||||||| || | |||| ||||| |||||| || ||| | |||||||| ||||||||| |||||| | | | |
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| T |
3649201 |
caaatcagttctgctttccatcttaagtggcaatagaactgagagcagaagcttctcatgatgtacctgaaactgatctttcactcaatctccataacca |
3649300 |
T |
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| Q |
118 |
ctactacgtgttgatcctccac |
139 |
Q |
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|||||||| ||||||||||||| |
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| T |
3649301 |
ctactacgcgttgatcctccac |
3649322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 3657323 - 3657452
Alignment:
| Q |
29 |
tgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctttcactatatctccgtcatcgctactacgtgt |
128 |
Q |
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|||| ||||||||||| ||||||| ||| |||||||||| |||||| || ||| | |||||||||||||||| | |||||| | | | || ||||| || |
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| T |
3657323 |
tgctctccattttaagcggcaatgcagctgagaacagaagcttctcatgatgtacctgaaactgctctttcagtcaatctccataaccactgctacgcgt |
3657422 |
T |
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| Q |
129 |
tgatcctccactgtcctccaccagcacttc |
158 |
Q |
| |
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||||||| ||| |||||||||||||||||| |
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| T |
3657423 |
tgatccttcaccgtcctccaccagcacttc |
3657452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 36164596 - 36164634
Alignment:
| Q |
18 |
caaatcagttctgctttccattttaagtggcaatggagc |
56 |
Q |
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||||||||||||||||||||| ||||| ||||||||||| |
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| T |
36164596 |
caaatcagttctgctttccatcttaagcggcaatggagc |
36164634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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