View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7781_low_16 (Length: 281)
Name: NF7781_low_16
Description: NF7781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7781_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 30412014 - 30412278
Alignment:
| Q |
1 |
taatacctacaattttactcctaacctttttctcattgtcatttttgtgaagattacctaaccaaggagagtgatgtatacaattttggggttgttctcc |
100 |
Q |
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| T |
30412014 |
taatacctacaattttactcctaacctttttctcattgtcatttttgtgaagattacctaaccaaggagaatgatgtatacaattttggggttgttctcc |
30412113 |
T |
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| Q |
101 |
tggaaattatgtcaggcaaacgtgcagtggataaaaacatgccgcttcaggaacaaaatttagttgaatgggccaagccattactcaacagcaaacataa |
200 |
Q |
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| T |
30412114 |
tggaaattatgtcaggcaaacgtgcagtggataaaaacatgccgcttcaggaacaaaatttggttgaatgggccaagccattactcaacaacaaacataa |
30412213 |
T |
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| Q |
201 |
aatctctcaagttatggatgttcgtatagaaggtgaatactcatcgcgtgatgcaatgaaattag |
265 |
Q |
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| T |
30412214 |
aatctctcaagttatggatgttcgtatagaaggtgaatactcatcgcgtgatgcaatgaaattag |
30412278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 42 - 257
Target Start/End: Original strand, 30423209 - 30423424
Alignment:
| Q |
42 |
tttttgtgaagattacctaaccaaggagagtgatgtatacaattttggggttgttctcctggaaattatgtcaggcaaacgtgcagtggataaaaacatg |
141 |
Q |
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| T |
30423209 |
tttttgtgaaggtcacctaactaaaaagagcgatgtctacagtttcggggttgttctcctagaaattatgtcaggcaagcgtgtattggataaaaaccga |
30423308 |
T |
|
| Q |
142 |
ccgcttcaggaacaaaatttagttgaatgggccaagccattactcaacagcaaacataaaatctctcaagttatggatgttcgtatagaaggtgaatact |
241 |
Q |
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| T |
30423309 |
ccgtctggagagcatgatttagttgcatgggccaagccattactcatgagcaaacgtaagatttctcaagttatggatgctcgtatagaaggccaatact |
30423408 |
T |
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| Q |
242 |
catcgcgtgatgcaat |
257 |
Q |
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| T |
30423409 |
catcgcgtgaagcaat |
30423424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 30409531 - 30409663
Alignment:
| Q |
8 |
tacaattttactcctaacctttttctcattgtcatttt-tgtgaagattacctaaccaaggagagtgatgtatacaattttggggttgttctcctggaaa |
106 |
Q |
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|||||||||||| |||| ||||||| ||||| | |||| ||||||| | ||||||| || ||||||||| ||||||||||||||||||||||| |||||| |
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| T |
30409531 |
tacaattttacttctaatctttttcccattgcctttttttgtgaaggtcacctaactaaagagagtgatttatacaattttggggttgttctcttggaaa |
30409630 |
T |
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| Q |
107 |
ttatgtcaggcaaacgtgcagtggataaaaaca |
139 |
Q |
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| T |
30409631 |
ttatgtcaggcaaacatgcattagataacaaca |
30409663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 30405417 - 30405545
Alignment:
| Q |
5 |
acctacaattttactcctaacct-ttttctcattgtcatttttgtgaagattacctaaccaaggagagtgatgtatacaattttggggttgttctcctgg |
103 |
Q |
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| T |
30405417 |
acctacaattttattcctaacatcttttcgaattgtcttttttgtgaaggtcacttgaccaaaaagagtgatgtatacggttttggggttgttctcctgg |
30405516 |
T |
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| Q |
104 |
aaattatgtcaggcaaacgtgcagtggat |
132 |
Q |
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| T |
30405517 |
aaattatgtcgggaaaacgtgcattggat |
30405545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 30402395 - 30402453
Alignment:
| Q |
68 |
agagtgatgtatacaattttggggttgttctcctggaaattatgtcaggcaaacgtgca |
126 |
Q |
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| T |
30402395 |
agagtgatatatacggttttggggttcttctcctggaaattatgtcaggaaaacgtgca |
30402453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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