View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7781_low_17 (Length: 264)
Name: NF7781_low_17
Description: NF7781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7781_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 19501775 - 19502024
Alignment:
| Q |
1 |
cccatgaaaagagcgtgattcatatgacgttgtcggtgaacaagccttctgattttggcggcgcggcgaccagcattgctcagagccgcaaagatggaag |
100 |
Q |
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| T |
19501775 |
cccacgaaaagagcgtgattcatatgacgttgtcggtgaacaagccttctgattttggcggcgcggcgaccagcattgctcagagccgcaaagatggaag |
19501874 |
T |
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| Q |
101 |
agtggagtttggactcattctgtcatctttgattaaatacaagaacagtatgtggcattctggctgggagtctctgaaggttgtttgcaatccactcaaa |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
19501875 |
agtggagtttgggctcattctgtcatctttgattaaatataagaacagtatgtcgcattccggctgggagtctctgaaggttgtttgcaatccactcaaa |
19501974 |
T |
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| Q |
201 |
tttggagtttctccaaatgacttcaacacaaacacaacaaaccctgggat |
250 |
Q |
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| T |
19501975 |
tttggagtttctccaaatgacttcaacacaaacacaacaaaccctgggat |
19502024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 19517570 - 19517355
Alignment:
| Q |
1 |
cccatgaaaagagcgtgattcatatgacgttgtcggtgaacaagccttctgattttggcggcgcggcgaccagcattgctcagagccgcaaagatggaag |
100 |
Q |
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| T |
19517570 |
cccataaaaggagtgtgattcatatgacgttgtcggtgaacaagcctattgattttggtggcgccgcagccagcattgctcagagccgcaaagatggaac |
19517471 |
T |
|
| Q |
101 |
agtggagtttggactcattctgtcatctttgattaaatacaagaacagtatgtggcattctggctgggagtctctgaaggttgtttgcaatccactcaaa |
200 |
Q |
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| T |
19517470 |
ggtggagtttgggctcattctgtcatcgaagattaaatacaagaataatatgtggagttccggctgggagtctctgaaggttgtttgcaatccactcaaa |
19517371 |
T |
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| Q |
201 |
tttggagtttctccaa |
216 |
Q |
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|||||||||||||||| |
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| T |
19517370 |
tttggagtttctccaa |
19517355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 231
Target Start/End: Complemental strand, 19125279 - 19125124
Alignment:
| Q |
76 |
ttgctcagagccgcaaagatggaagagtggagtttggactcattctgtcatctttgattaaatacaagaacagtatgtggcattctggctgggagtctct |
175 |
Q |
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|||||| ||| |||||||||||||| ||||||||||| || ||| ||||| ||||| |||| ||||||||||| | | ||||| | |||| ||| | |
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| T |
19125279 |
ttgctctgaggcgcaaagatggaagggtggagtttgggctgattgtgtcaactttgtttaagtacaagaacagattttctcattccgactggacatcttt |
19125180 |
T |
|
| Q |
176 |
gaaggttgtttgcaatccactcaaatttggagtttctccaaatgacttcaacacaa |
231 |
Q |
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| T |
19125179 |
gaaggttgtttgcaacccactcaaatttgcagtttctcgaaatgtctacaacacaa |
19125124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 19530767 - 19530841
Alignment:
| Q |
74 |
cattgctcagagccgcaaagatggaagagtggagtttggactcattctgtcatctttgattaaatacaagaacag |
148 |
Q |
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| T |
19530767 |
cattgctcagagccgcaaaaatggaatggtggagtttgggctgattgtgtcagctttgtttaagtacaagaacag |
19530841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 231
Target Start/End: Original strand, 19493762 - 19493983
Alignment:
| Q |
10 |
agagcgtgattcatatgacgttgtcggtgaacaagccttctgattttggcggcgcggcgaccagcattgctcagagccgcaaagatggaagagtggagtt |
109 |
Q |
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|||| ||||||||| ||||| | || ||||| ||| || |||||| || ||||| ||||| | ||||||| ||||||||||||||||| ||||| || |
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| T |
19493762 |
agagtgtgattcatttgacgctttccgtgaataagtctgatgatttcggtggcgctgcgactggtattgctcggagccgcaaagatggaacggtggaatt |
19493861 |
T |
|
| Q |
110 |
tggactcattctgtcatctttgattaaatacaagaacagtatgtggcattctggctgggagtctctgaaggttgtttgcaatccactcaaatttggagtt |
209 |
Q |
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||| || ||| || |||||| |||| ||||| ||||| | || || | |||| | || |||||||||||||||| |||||||| |||| |||| |
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| T |
19493862 |
tgggctaattgtgaagtctttgtttaagtacaaaaacaggtgggctcagtccgactggaggcctatgaaggttgtttgcaacccactcaagtttgcagtt |
19493961 |
T |
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| Q |
210 |
tctccaaatgacttcaacacaa |
231 |
Q |
| |
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|||||||||||| |||||||| |
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| T |
19493962 |
tctccaaatgacaacaacacaa |
19493983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 19530870 - 19530924
Alignment:
| Q |
177 |
aaggttgtttgcaatccactcaaatttggagtttctccaaatgacttcaacacaa |
231 |
Q |
| |
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|||| ||||||||| |||||||| |||| ||||||||||||||||| |||||||| |
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| T |
19530870 |
aaggctgtttgcaaaccactcaagtttgcagtttctccaaatgactacaacacaa |
19530924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 19130501 - 19130460
Alignment:
| Q |
175 |
tgaaggttgtttgcaatccactcaaatttggagtttctccaa |
216 |
Q |
| |
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|||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
19130501 |
tgaaggttgtttgcaacccactcaaatttgcagtttctccaa |
19130460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 19523832 - 19523886
Alignment:
| Q |
177 |
aaggttgtttgcaatccactcaaatttggagtttctccaaatgacttcaacacaa |
231 |
Q |
| |
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|||| ||||||||| |||||||| |||| ||||||||||||||||| ||||||| |
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| T |
19523832 |
aaggctgtttgcaacccactcaagtttgcagtttctccaaatgactataacacaa |
19523886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 19523730 - 19523803
Alignment:
| Q |
75 |
attgctcagagccgcaaagatggaagagtggagtttggactcattctgtcatctttgattaaatacaagaacag |
148 |
Q |
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||||||| |||||||||| |||||| ||||||||||| || ||| |||| ||||| |||| ||||||||||| |
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| T |
19523730 |
attgctctgagccgcaaaaatggaatggtggagtttgggctgattgtgtcggctttgtttaagtacaagaacag |
19523803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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