View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7781_low_23 (Length: 240)
Name: NF7781_low_23
Description: NF7781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7781_low_23 |
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| [»] scaffold1463 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 7391132 - 7390927
Alignment:
| Q |
18 |
tgaatcatatctgaaatgaaacagggagtcttaaaattaaaaatcttcaatagttaagtgttatcacatttgcattgaggaattcaagacatcacaaatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7391132 |
tgaatcatatctgaaatgaaacagggagtcttaaaattaaaaatcttcaatagttaagtgttatcacatttgcattgaggaattcaagacatcacaaatc |
7391033 |
T |
|
| Q |
118 |
aaacctacacaaaagaaagaaagaaagacaacacaatcataaagagtcaactaatggtgtgatattaaaattcagaacattcattagaaccttgaaacgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7391032 |
aaacctacacaaaagaaagaaagaaagacaacacaatcataaagagtcaactaatggtgtgatattaaaattcagaacattcattagaaccttgaaacgt |
7390933 |
T |
|
| Q |
218 |
tcagat |
223 |
Q |
| |
|
|||||| |
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| T |
7390932 |
tcagat |
7390927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 19585980 - 19586185
Alignment:
| Q |
18 |
tgaatcatatctgaaatgaaacagggagtcttaaaattaaaaatcttcaatagttaagtgttatcacatttgcattgaggaattcaagacatcacaaatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19585980 |
tgaatcatatctgaaatgaaacagggagtcttaaaattaaaaatcttcaatagttaagtgttatcacatttgcattgaggaattcaagacatcacaaatc |
19586079 |
T |
|
| Q |
118 |
aaacctacacaaaagaaagaaagaaagacaacacaatcataaagagtcaactaatggtgtgatattaaaattcagaacattcattagaaccttgaaacgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19586080 |
aaacctacacaaaagaaagaaagaaagacaacacaatcataaagagtcaactaatggtgtgatattaaaattcagaacattcattagaaccttgaaacgt |
19586179 |
T |
|
| Q |
218 |
tcagat |
223 |
Q |
| |
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|||||| |
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| T |
19586180 |
tcagat |
19586185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 11657713 - 11657918
Alignment:
| Q |
18 |
tgaatcatatctgaaatgaaacagggagtcttaaaattaaaaatcttcaatagttaagtgttatcacatttgcattgaggaattcaagacatcacaaatc |
117 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11657713 |
tgaatcatatctgaaatgaaacaggtagtcttaaaattaaaaatcttcaatagttaagtgttatcacatttgcattgaggaattcaagacatcacaaatc |
11657812 |
T |
|
| Q |
118 |
aaacctacacaaaagaaagaaagaaagacaacacaatcataaagagtcaactaatggtgtgatattaaaattcagaacattcattagaaccttgaaacgt |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11657813 |
aaacctacacaaaagaaagaaagaaagacaacacaatcataaagagtcaattaatggtgtgatattaaaattcagaacattcattagaaccttgaaacgt |
11657912 |
T |
|
| Q |
218 |
tcagat |
223 |
Q |
| |
|
|||||| |
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|
| T |
11657913 |
tcagat |
11657918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 50233782 - 50233986
Alignment:
| Q |
18 |
tgaatcatatctgaaatgaaacagggagtcttaaaattaaaaatcttcaatagttaagtgttatcacatttgcattgaggaattcaagacatcacaaatc |
117 |
Q |
| |
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||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||| |
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| T |
50233782 |
tgaatcatatctgaaatgaaacaggaa-tcttaaaattaaaaatcttcaatagttaattgttagcacatttgcaccgaggaattcaagacatcacaaatc |
50233880 |
T |
|
| Q |
118 |
aaacctacacaaaagaaagaaagaaagacaacacaatcataaagagtcaactaatggtgtgatattaaaattcagaacattcattagaaccttgaaacgt |
217 |
Q |
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||||||||| ||||||||||||||||||||||||||| | |||||||||| ||||||||||||| ||||||||| |||||| |||||||||||||||||| |
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| T |
50233881 |
aaacctacataaaagaaagaaagaaagacaacacaataaaaaagagtcaattaatggtgtgatactaaaattcaaaacatttattagaaccttgaaacgt |
50233980 |
T |
|
| Q |
218 |
tcagat |
223 |
Q |
| |
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|||||| |
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|
| T |
50233981 |
tcagat |
50233986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1463 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold1463
Description:
Target: scaffold1463; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 539 - 437
Alignment:
| Q |
21 |
atcatatctgaaatgaaacagggagtcttaaaattaaaaatcttcaatagttaagtgttatcacatttgcattgaggaattcaagacatcacaaatcaaa |
120 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
539 |
atcatatctgaaatgaaacagggagtcttaaatttaaaaatcttcaatagttaattgttatcacatttgcattgaggaattcaagacatcacaaatcaaa |
440 |
T |
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| Q |
121 |
cct |
123 |
Q |
| |
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||| |
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|
| T |
439 |
cct |
437 |
T |
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