View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7781_low_24 (Length: 239)

Name: NF7781_low_24
Description: NF7781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7781_low_24
NF7781_low_24
[»] scaffold0214 (4 HSPs)
scaffold0214 (64-139)||(12980-13055)
scaffold0214 (64-139)||(17054-17129)
scaffold0214 (64-139)||(19438-19513)
scaffold0214 (64-139)||(26996-27071)
[»] chr7 (1 HSPs)
chr7 (68-139)||(23467757-23467828)
[»] chr2 (1 HSPs)
chr2 (64-139)||(4577223-4577298)
[»] chr6 (1 HSPs)
chr6 (1-44)||(34501855-34501898)
[»] chr5 (2 HSPs)
chr5 (1-44)||(19678713-19678756)
chr5 (1-44)||(19689069-19689112)
[»] chr3 (1 HSPs)
chr3 (78-149)||(10107246-10107315)


Alignment Details
Target: scaffold0214 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 13055 - 12980
Alignment:
Q  64 gcttcttatatttttatgccaataggtaacgaaacctaattctcccatttgtttctttcgggtcagtaacaacaca 139  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  13055 gcttcttatatttatatgccaataggtaacgatacctaattctcccatttgtttctttcgggttagtaacaacaca 12980  T

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Target: scaffold0214; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 17129 - 17054
Alignment:
Q  64 gcttcttatatttttatgccaataggtaacgaaacctaattctcccatttgtttctttcgggtcagtaacaacaca 139  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  17129 gcttcttatatttatatgccaataggtaacgatacctaattctcccatttgtttctttcgggttagtaacaacaca 17054  T

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Target: scaffold0214; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 19513 - 19438
Alignment:
Q  64 gcttcttatatttttatgccaataggtaacgaaacctaattctcccatttgtttctttcgggtcagtaacaacaca 139  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  19513 gcttcttatatttatatgccaataggtaacgatacctaattctcccatttgtttctttcgggttagtaacaacaca 19438  T

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Target: scaffold0214; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 27071 - 26996
Alignment:
Q  64 gcttcttatatttttatgccaataggtaacgaaacctaattctcccatttgtttctttcgggtcagtaacaacaca 139  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  27071 gcttcttatatttatatgccaataggtaacgatacctaattctcccatttgtttctttcgggttagtaacaacaca 26996  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 23467757 - 23467828
Alignment:
Q  68 cttatatttttatgccaataggtaacgaaacctaattctcccatttgtttctttcgggtcagtaacaacaca 139  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  23467757 cttatatttatatgccaataggtaacgatacctaattctcccatttgtttctttcgggttagtaacaacaca 23467828  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 4577298 - 4577223
Alignment:
Q  64 gcttcttatatttttatgccaataggtaacgaaacctaattctcccatttgtttctttcgggtcagtaacaacaca 139  Q
    ||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||    
T  4577298 gcttcttatatttatatgccaataggtaacgatccctaattctcccatttgtttctttcgggttagtaacaacaca 4577223  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 34501898 - 34501855
Alignment:
Q  1 caaaacgtgatgtacgtgctgcgccctgttgtgtgataaaacgt 44  Q
    ||||||||||||| | |||||| |||||||||||||||||||||    
T  34501898 caaaacgtgatgtgcttgctgctccctgttgtgtgataaaacgt 34501855  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 19678756 - 19678713
Alignment:
Q  1 caaaacgtgatgtacgtgctgcgccctgttgtgtgataaaacgt 44  Q
    ||||||||||||| | |||||| |||||||||||||||||||||    
T  19678756 caaaacgtgatgtgcttgctgctccctgttgtgtgataaaacgt 19678713  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 19689112 - 19689069
Alignment:
Q  1 caaaacgtgatgtacgtgctgcgccctgttgtgtgataaaacgt 44  Q
    ||||||||||||| | |||||| |||||||||||||||||||||    
T  19689112 caaaacgtgatgtgcttgctgctccctgttgtgtgataaaacgt 19689069  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 149
Target Start/End: Original strand, 10107246 - 10107315
Alignment:
Q  78 tatgccaataggtaacgaaacctaattctcccatttgtttctttcgggtcagtaacaacacacagaagccca 149  Q
    |||||||||| |||| |||||||||||||  ||||||||||||||  || |||||||||||| |||||||||    
T  10107246 tatgccaataagtaaagaaacctaattct-tcatttgtttctttc-cgttagtaacaacacatagaagccca 10107315  T

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