View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7781_low_27 (Length: 224)
Name: NF7781_low_27
Description: NF7781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7781_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 34003715 - 34003905
Alignment:
| Q |
19 |
acgaaaacaacatacttgcatttgcaataagctcagatgagaaccctgctgagtagctatcttgaactgatttatgcaataggtgctgctctgcaatccc |
118 |
Q |
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| T |
34003715 |
acgaaaacaacatacttgcatttgcaataagctcacatgagaaccctgctgagtagctatcttgaactgatttatgcaataggtgctgctctgcaatccc |
34003814 |
T |
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| Q |
119 |
tctagagtaatacctcttacatataacaacgatgcataaaccaaaaacgacaatgataactagaattccaacaatgacaccaacaaaaatt |
209 |
Q |
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| T |
34003815 |
tctagagtaatacctcttacatataacaacgatgcataaaccaaaaaggacaatgataacaagaattccaacaatgacaccaacaaaaatt |
34003905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 31 - 206
Target Start/End: Original strand, 29067854 - 29068011
Alignment:
| Q |
31 |
tacttgcatttgcaataagctcagatgagaaccctgctgagtagctatcttgaactgatttatgcaataggtgctgctctgcaatccctctagagtaata |
130 |
Q |
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| T |
29067854 |
tacttgcctttgcaataagctcgaatgagaaccctgctgagt------cttgaactgatctgtgcaataggtgccactctcaaatccccctcgagtaat- |
29067946 |
T |
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| Q |
131 |
cctcttacatataacaacgatgcataaaccaaaaacgacaatgataactagaattccaacaatgacaccaacaaaa |
206 |
Q |
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| T |
29067947 |
-----------taacaacaatgcataaacccaaatccacaatgataactagaattccaacaacgacgccaacaaaa |
29068011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 3616611 - 3616685
Alignment:
| Q |
135 |
ttacatataacaacgatgcataaaccaaaaacgacaatgataactagaattccaacaatgacaccaacaaaaatt |
209 |
Q |
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| T |
3616611 |
ttacaaataacaacaatgtataaacccaaaacaataatgataataggaattcaaacaatgacaccaacaaaaatt |
3616685 |
T |
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