View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7781_low_28 (Length: 218)
Name: NF7781_low_28
Description: NF7781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7781_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 35225713 - 35225919
Alignment:
| Q |
1 |
cttgagaactgcaacattcatcttctccctcacaaaaaggaaatccagttttctacattcctcatcgcctcatgataattgcggatagaagcaatataga |
100 |
Q |
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| T |
35225713 |
cttgagaactgcaacattcatcttctccctcacaaaaaggaaatccagttttctaccttcctcatcgcctcatgataattgcggatagaaacaatataga |
35225812 |
T |
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| Q |
101 |
caactacttggttgtcccgatataagggttgaagttggagaaatgataaaattataaacaagatatgatagccaagttgaatcacttggcgcggctgcaa |
200 |
Q |
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| T |
35225813 |
caactacttggttgtcccaatataagggttgaagttggagaaatgataaaattataaacaagatatgatagccaagttgaatcatttggcgcggctgcaa |
35225912 |
T |
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| Q |
201 |
atgatgt |
207 |
Q |
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| T |
35225913 |
aggatgt |
35225919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 35474641 - 35474737
Alignment:
| Q |
1 |
cttgagaactgcaacattcatcttctccctcacaaaaaggaaatccagttttctacattcctcatcgcctcatgataattgcggatagaagcaatata |
98 |
Q |
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| T |
35474641 |
cttgagaaccacaacattcatcttctccctca-aaaaaggacatcaaattttctacgttcgtcatccgctcgtgataattatggatagaagcaatata |
35474737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 35219777 - 35219859
Alignment:
| Q |
12 |
caacattcatcttctccctcacaaaaaggaaatccagttttctacattcctcatcgcctcatgataattgcggatagaagcaa |
94 |
Q |
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| T |
35219777 |
caacagtcatcttcttcctcacaaaaaggacatccaaatttttatgttcctcatcccctcgtggtaattgtggatagaagcaa |
35219859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 35252752 - 35252840
Alignment:
| Q |
15 |
cattcatcttctccctcacaaaaaggaaatccagttttctacattcctcatcgcctcatgataattgcggatagaagcaatatagacaa |
103 |
Q |
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|||| ||||||||||| || |||||| ||||| ||| |||||| ||||| |||||||||| || ||||| ||||||||||||||| |
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| T |
35252752 |
cattaatcttctcccttacttaaaggacatccattttcctacatgcctcaatttctcatgataagtgtggatataagcaatatagacaa |
35252840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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