View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7781_low_3 (Length: 610)

Name: NF7781_low_3
Description: NF7781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7781_low_3
NF7781_low_3
[»] chr6 (11 HSPs)
chr6 (1-594)||(2126297-2126889)
chr6 (8-180)||(9402416-9402588)
chr6 (8-147)||(34346136-34346275)
chr6 (16-84)||(20348900-20348968)
chr6 (23-123)||(8320941-8321041)
chr6 (30-176)||(14321718-14321862)
chr6 (11-66)||(29340750-29340805)
chr6 (14-84)||(24221449-24221519)
chr6 (20-84)||(1947976-1948040)
chr6 (11-66)||(29342114-29342169)
chr6 (8-64)||(252973-253029)
[»] chr8 (12 HSPs)
chr8 (8-176)||(28345318-28345486)
chr8 (14-177)||(36274876-36275038)
chr8 (8-160)||(29918434-29918586)
chr8 (8-200)||(5700183-5700374)
chr8 (8-176)||(6388598-6388766)
chr8 (14-123)||(8545495-8545604)
chr8 (8-84)||(29416363-29416439)
chr8 (8-191)||(30903871-30904056)
chr8 (8-200)||(9476083-9476265)
chr8 (8-71)||(17084307-17084370)
chr8 (30-66)||(14687343-14687379)
chr8 (25-91)||(27777377-27777443)
[»] chr4 (27 HSPs)
chr4 (8-144)||(7334309-7334445)
chr4 (9-203)||(37926395-37926586)
chr4 (30-170)||(9280989-9281129)
chr4 (22-150)||(42907734-42907862)
chr4 (8-182)||(25265235-25265408)
chr4 (8-176)||(12075725-12075893)
chr4 (8-180)||(21714065-21714237)
chr4 (24-176)||(33616209-33616361)
chr4 (8-183)||(17113090-17113264)
chr4 (30-191)||(33516151-33516313)
chr4 (32-177)||(21956907-21957051)
chr4 (8-177)||(36306618-36306787)
chr4 (32-176)||(8843898-8844042)
chr4 (32-176)||(8856862-8857006)
chr4 (10-170)||(36918959-36919118)
chr4 (15-79)||(40420766-40420830)
chr4 (8-170)||(9929267-9929430)
chr4 (8-152)||(35304634-35304778)
chr4 (32-71)||(30034531-30034570)
chr4 (20-62)||(4652605-4652647)
chr4 (8-169)||(25298934-25299094)
chr4 (8-180)||(25940973-25941143)
chr4 (33-160)||(37384131-37384258)
chr4 (30-149)||(39086008-39086130)
chr4 (8-67)||(16574944-16575003)
chr4 (8-79)||(43351560-43351631)
chr4 (230-322)||(19883005-19883097)
[»] chr5 (12 HSPs)
chr5 (14-191)||(29664804-29664981)
chr5 (35-170)||(18451985-18452120)
chr5 (8-178)||(35583944-35584113)
chr5 (13-200)||(6809996-6810176)
chr5 (8-84)||(40187842-40187918)
chr5 (8-71)||(17152996-17153059)
chr5 (8-180)||(7350497-7350669)
chr5 (13-188)||(38972754-38972929)
chr5 (30-177)||(24207539-24207683)
chr5 (32-160)||(457482-457606)
chr5 (8-58)||(16311486-16311536)
chr5 (132-180)||(16311383-16311431)
[»] chr1 (13 HSPs)
chr1 (8-176)||(42729037-42729205)
chr1 (34-168)||(8880302-8880436)
chr1 (15-160)||(13692479-13692624)
chr1 (6-71)||(14902966-14903031)
chr1 (14-160)||(25181037-25181184)
chr1 (37-180)||(36421623-36421766)
chr1 (30-175)||(39219108-39219253)
chr1 (30-98)||(25154998-25155066)
chr1 (8-71)||(14890990-14891053)
chr1 (8-71)||(16903349-16903412)
chr1 (13-71)||(5293608-5293666)
chr1 (10-84)||(45460229-45460303)
chr1 (113-170)||(5283692-5283749)
[»] chr7 (9 HSPs)
chr7 (32-191)||(11472791-11472949)
chr7 (15-159)||(37217843-37217987)
chr7 (34-149)||(31345384-31345499)
chr7 (33-191)||(6557802-6557962)
chr7 (15-152)||(23533722-23533859)
chr7 (20-98)||(3156927-3157005)
chr7 (8-202)||(3773901-3774094)
chr7 (15-144)||(19440136-19440265)
chr7 (8-160)||(43550525-43550676)
[»] chr2 (13 HSPs)
chr2 (19-151)||(31600886-31601018)
chr2 (15-148)||(34214778-34214910)
chr2 (12-177)||(25210209-25210374)
chr2 (8-152)||(35248498-35248642)
chr2 (6-160)||(30696750-30696904)
chr2 (13-160)||(29656844-29656992)
chr2 (8-147)||(35409274-35409413)
chr2 (17-177)||(34544403-34544563)
chr2 (13-200)||(35965167-35965354)
chr2 (8-62)||(4961609-4961663)
chr2 (46-180)||(13954611-13954745)
chr2 (46-180)||(14095818-14095952)
chr2 (110-170)||(13531879-13531939)
[»] scaffold0244 (1 HSPs)
scaffold0244 (14-152)||(4697-4835)
[»] chr3 (10 HSPs)
chr3 (33-123)||(3386002-3386092)
chr3 (14-160)||(27252401-27252546)
chr3 (15-139)||(34592990-34593112)
chr3 (13-88)||(26207119-26207194)
chr3 (15-176)||(37032191-37032350)
chr3 (33-123)||(3414679-3414769)
chr3 (8-170)||(772893-773056)
chr3 (14-79)||(27937564-27937629)
chr3 (31-71)||(40890214-40890254)
chr3 (110-200)||(30904885-30904974)
[»] scaffold1322 (1 HSPs)
scaffold1322 (13-176)||(944-1106)
[»] scaffold0008 (2 HSPs)
scaffold0008 (230-308)||(67797-67875)
scaffold0008 (230-308)||(75640-75718)


Alignment Details
Target: chr6 (Bit Score: 519; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Complemental strand, 2126889 - 2126297
Alignment:
Q  1 ggcttttgtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagacttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2126889 ggcttttgtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagacttt 2126790  T
Q  101 aactctgtaagtgaaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttcttcattcgagatggatttgggttatgggttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2126789 aactctgtaagtgaaatgatttaaagcttgagtttctatctatataaaaggggtaataaacttattttcttcattcgagatggatttgggttatgggttc 2126690  T
Q  201 agaatgcgtatctatatttatgttaaccatcccgtatccgtgtcttataatcgggggaaatccaaaccaatacttaaactcattcaaaacggaaaaaatc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||  | ||||||| |||||||||||||||||||||||||| |||||||| |    
T  2126689 agaatgcgtatctatatttatgttaaccatcccgtatccgtgtctaataat-tgaggaaatctaaaccaatacttaaactcattcaaaatggaaaaaacc 2126591  T
Q  301 tgtcaaattagacttggttcggacgaatgctcacatatatgagtttggttgtcatggctaattgagtgagtgagtcctttac-tttaacctatcatattt 399  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  2126590 tgtcaaattagacttggttcggacgaatactcacatatatgagtttgattgtcatggctaattgactgagtgagtcctttacttttaacctatcatattt 2126491  T
Q  400 ttcacttttattaatctattttatcaattttgtcgctcattcaatcatgcaacattgtctaactgatttgttcctttatgtaaaaatgaatatcaatatc 499  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2126490 ttcac-tttattaatctattttatcaattttgtcgctcattcaatcatgcaacattgtccaactgatttgttcctttatgtaaaaatgaatatcaatatc 2126392  T
Q  500 tctcaaaaatacatactcctaaacgtgtagtacaatgcaccaactaggtcctatctttaggacacctttaacctttaagtcaagatgtgaaaaac 594  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2126391 tctcaaaaatacatactcctaaacgtgtagtaaaatgcaccaactaggtcctatctttaggacacctttaacctttaagtaaagatgtgaaaaac 2126297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 9402416 - 9402588
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctg 107  Q
    |||| |||||| ||||||||| | | |||||||||||||||||||||||||||||||||||||| |||||||||| | ||| ||| ||||| | ||| ||    
T  9402416 gtgatggagaagagagaggccgaaaatgtgagatatggaaggagaaaagagagaactatgataagtgagtgtgatatgaaagacctagactctgactgtg 9402515  T
Q  108 taagtgaaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttcttcattcgaga 180  Q
    | ||||||||||||||  | ||| |||||||| |||||||| ||| || |||| | ||||||| |||||||||    
T  9402516 tgagtgaaatgatttagggtttgggtttctatttatataaatggggtactaaattgattttctacattcgaga 9402588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 34346275 - 34346136
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctg 107  Q
    ||||||||||| | ||||||| ||| ||||||||||||||| |||||||| ||||||||||||| ||| | | |||||||| || |||||| | ||| ||    
T  34346275 gtgaaggagaagaaagaggccgagaatgtgagatatggaagaagaaaagatagaactatgataagtgactctcatctaaaagactgagactctgactgtg 34346176  T
Q  108 taagtgaaatgatttaaagcttgagtttctatctatataa 147  Q
    | ||||||||||||||  | ||| |||||||| |||||||    
T  34346175 tgagtgaaatgatttagggtttgggtttctatttatataa 34346136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 20348900 - 20348968
Alignment:
Q  16 gaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatct 84  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||| | ||||| ||||    
T  20348900 gaaaagagaggcaaaaagtgtgagatatggaaggagaaaagagagaactatgataagtaagtgtcatct 20348968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 8321041 - 8320941
Alignment:
Q  23 gaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtgaaatgattt 122  Q
    |||| ||||||||||||||||||| | |||||| ||| ||||||||||| ||| |||  ||| ||| ||||||||| | ||| |||||||||||||||||    
T  8321041 gaggtcaagagtgtgagatatggacgaagaaaatagataactatgataagtgaatgtcgtctgaaagaccgagactctgactgtgtaagtgaaatgattt 8320942  T
Q  123 a 123  Q
    |    
T  8320941 a 8320941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 30 - 176
Target Start/End: Original strand, 14321718 - 14321862
Alignment:
Q  30 agagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtgaaatgatttaaagctt 129  Q
    ||||||||||||||| |||||||||| |||||| |||||||| ||| ||| |||| ||| | |||||||||  | | || |||||||||||||||   ||    
T  14321718 agagtgtgagatatgaaaggagaaaa-agagaattatgataagtgattgtcatcttaaagaacgagactttgtcac-gtgagtgaaatgatttaagattt 14321815  T
Q  130 gagtttctatctatataaaagggataataaacttattttcttcattc 176  Q
    |||||||||| |||||||||  | ||||||| | ||||||| |||||    
T  14321816 gagtttctatttatataaaataggtaataaattaattttctacattc 14321862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 29340750 - 29340805
Alignment:
Q  11 aaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactat 66  Q
    |||||||| | ||||||| |||||||||||||| ||||||||||||||||||||||    
T  29340750 aaggagaagaaagaggccgagagtgtgagatatcgaaggagaaaagagagaactat 29340805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 24221449 - 24221519
Alignment:
Q  14 gagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatct 84  Q
    ||||| ||||||||  |||||||||| ||||||| ||||||||||||||||| ||||| ||||||| ||||    
T  24221449 gagaagagagaggctgagagtgtgagctatggaacgagaaaagagagaactacgataagtgagtgtcatct 24221519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 1948040 - 1947976
Alignment:
Q  20 agagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatct 84  Q
    ||||||| ||||| ||||||||||| ||| ||||||||| |||||||||||| ||||||| ||||    
T  1948040 agagaggtcaagattgtgagatatgaaagtagaaaagagggaactatgataagtgagtgtcatct 1947976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 29342169 - 29342114
Alignment:
Q  11 aaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactat 66  Q
    |||||||| | ||||||| ||||||||||||||  |||||||||||||||||||||    
T  29342169 aaggagaagaaagaggccgagagtgtgagatatcaaaggagaaaagagagaactat 29342114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 253029 - 252973
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaact 64  Q
    |||| |||||| ||||||| | ||| ||||||||||||||||| || ||||||||||    
T  253029 gtgatggagaagagagaggtcgagactgtgagatatggaaggaaaagagagagaact 252973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 28345318 - 28345486
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctg 107  Q
    |||| |||||| ||||||| ||| ||||||||||||||||||||| |||||||||||||||||| ||||||| |||| |||||| |||||| | ||| ||    
T  28345318 gtgatggagaagagagaggtcaaaagtgtgagatatggaaggagataagagagaactatgataagtgagtgtcatctgaaatactgagactatgactgtg 28345417  T
Q  108 taagtgaaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttcttcattc 176  Q
    | |||||||||||||| |  ||  |||||||| |||||||||||| ||||| | ||||||||| |||||    
T  28345418 tgagtgaaatgatttagaatttcggtttctatttatataaaaggggtaatatatttattttctacattc 28345486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 14 - 177
Target Start/End: Original strand, 36274876 - 36275038
Alignment:
Q  14 gagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtg 113  Q
    ||||| |||||| || ||||||||||||||||||||||||||| ||| |||||||||| ||||||| |||| ||| ||||||||||| ||| ||| ||||    
T  36274876 gagaagagagagacctagagtgtgagatatggaaggagaaaagggaggactatgataagtgagtgtcatctgaaagaccgagactttgactgtgtgagtg 36274975  T
Q  114 aaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttcttcattcg 177  Q
    ||||||||| | | ||| |||||||| ||||||||||||||| |||| | ||||| | ||||||    
T  36274976 aaatgattt-agggttgggtttctatttatataaaagggatagtaaattgattttttacattcg 36275038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 8 - 160
Target Start/End: Original strand, 29918434 - 29918586
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctg 107  Q
    |||| ||| |||||||||| | ||||||| |||||||||||| ||||||| ||||||||||||||| ||||| |||| ||| |  |||||| ||||| ||    
T  29918434 gtgatggacaaaagagaggtcgagagtgtaagatatggaaggcgaaaagatagaactatgataactaagtgtcatctgaaagattgagactctaactgtg 29918533  T
Q  108 taagtgaaatgatttaaagcttgagtttctatctatataaaagggataataaa 160  Q
    | ||||||||||||||  | |||||||||||| |||||||||| | |||||||    
T  29918534 tgagtgaaatgatttagggtttgagtttctatttatataaaagaggtaataaa 29918586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 5700183 - 5700374
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctg 107  Q
    |||| |||||| ||||||||  | ||||||||||||| ||||||| ||||||||| |||||||| ||| ||| |||||||| ||  ||||| | ||| ||    
T  5700183 gtgatggagaagagagaggcagatagtgtgagatatgaaaggagataagagagaattatgataagtgactgtcatctaaaagactaagactctgactatg 5700282  T
Q  108 taagtgaaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttcttcattcgagatggatttgggttatgggttc 200  Q
      |||||||||||||| || ||  ||||| || |||||||||||| ||| ||| | ||||| | |||||| |||||||||||| |||||||||    
T  5700283 ggagtgaaatgatttagagtttcggtttcaatttatataaaaggggtaaaaaattaattttatacattcgggatggatttggg-tatgggttc 5700374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 6388766 - 6388598
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctg 107  Q
    ||||||||||| ||||||||| ||||||||||  |||||||||||||  ||||||||||||||| ||||||| || | |||  | |||||| ||| | ||    
T  6388766 gtgaaggagaagagagaggccgagagtgtgaggcatggaaggagaaagaagagaactatgataagtgagtgtcattttaaagtctgagactctaattgtg 6388667  T
Q  108 taagtgaaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttcttcattc 176  Q
    | ||||||||||||||  | ||| |||||| | ||||||||| || ||||||| | ||||||| |||||    
T  6388666 tgagtgaaatgatttagggtttgggtttctgtttatataaaatgggtaataaattgattttctacattc 6388598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 8545604 - 8545495
Alignment:
Q  14 gagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtg 113  Q
    |||||||||||||   ||| ||||||||||||||||||||||||||||| |||||||| ||||||| || | ||| ||||||||| |  || | | ||||    
T  8545604 gagaaaagagaggttgagaatgtgagatatggaaggagaaaagagagaattatgataagtgagtgtcatttgaaagaccgagactctggctatttgagtg 8545505  T
Q  114 aaatgattta 123  Q
    ||||||||||    
T  8545504 aaatgattta 8545495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 29416439 - 29416363
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatct 84  Q
    ||||||||||| |||| |||||| ||||||||| ||| |||||||||||||| ||||||||||| ||||||| ||||    
T  29416439 gtgaaggagaagagaggggccaaaagtgtgagacatgaaaggagaaaagagaaaactatgataagtgagtgtcatct 29416363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 191
Target Start/End: Original strand, 30903871 - 30904056
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatct-aaaataccgagac-tttaactc 105  Q
    |||| |||||| ||||||||||| ||||| ||||||  | |||||||||||| ||||||||||| ||| ||| || | |||| |  ||||| ||| |||     
T  30903871 gtgatggagaagagagaggccaatagtgtaagatatatagggagaaaagagaaaactatgataaatgaatgtcatttgaaaaaattgagacttttgactg 30903970  T
Q  106 tgtaagtgaaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttcttcattcgagatggatttgggt 191  Q
    ||| ||||||||||||||| | ||  |||||||| ||||||||| |  ||||||| | ||||||| |||||| ||  |||||||||    
T  30903971 tgtgagtgaaatgatttaaggttttggtttctatttatataaaatgtgtaataaattgattttctacattcgggactgatttgggt 30904056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 200
Target Start/End: Complemental strand, 9476265 - 9476083
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctg 107  Q
    |||| |||||| ||||||| | |||||||||||| |||||| ||| |||||||||||||||||| || |||||| |||        ||||| | ||| ||    
T  9476265 gtgatggagaagagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtgtgtgtga-cta--------agactctgactgtg 9476175  T
Q  108 taagtgaaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttcttcattcgagatggatttgggttatgggttc 200  Q
    | |||||||| ||||| || || | ||||||| |||||| ||||| ||||||  | ||||||| |||||| ||||| |||||| |||||||||    
T  9476174 tgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggatgggtttggg-tatgggttc 9476083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 17084370 - 17084307
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataa 71  Q
    ||||||||||| | | ||| | ||||||||| |||||||||||||||||||| |||||||||||    
T  17084370 gtgaaggagaagaaaaaggtcgagagtgtgaaatatggaaggagaaaagagataactatgataa 17084307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 14687343 - 14687379
Alignment:
Q  30 agagtgtgagatatggaaggagaaaagagagaactat 66  Q
    ||||||||||||||||||| |||||||||||||||||    
T  14687343 agagtgtgagatatggaagaagaaaagagagaactat 14687379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 27777443 - 27777377
Alignment:
Q  25 ggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaatac 91  Q
    |||| ||| |||||||| | |||||||||| ||| |||||||||||| ||||||| |||| ||||||    
T  27777443 ggccgagattgtgagattttgaaggagaaaggagtgaactatgataagtgagtgtcatctgaaatac 27777377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 5e-33; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 7334445 - 7334309
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctg 107  Q
    |||| |||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||| | | ||| | |||||| || |||||||||||| ||    
T  7334445 gtgatggagaaaagagaggccgagattgtgagatatggaaggagaaaagagagaattatgataaataaatgtcaactaaaagactgagactttaactgtg 7334346  T
Q  108 taagtgaaatgatttaaagcttgagtttctatctata 144  Q
    | |||||||||||||| || |||||||||||| ||||    
T  7334345 tgagtgaaatgatttagagtttgagtttctatttata 7334309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 9 - 203
Target Start/End: Original strand, 37926395 - 37926586
Alignment:
Q  9 tgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgt 108  Q
    ||||| |||| | ||||| | |||||||||||||||||||||||||| ||||||||||||||| ||| ||| |||  ||| || |||||||||||| |||    
T  37926395 tgaagcagaagaaagaggtcgagagtgtgagatatggaaggagaaaatagagaactatgataagtgactgtcatc--aaagactgagactttaactgtgt 37926492  T
Q  109 aagtgaaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttcttcattcgagatggatttgggttatgggttcaga 203  Q
     ||| ||||||||||||| ||||||||| ||  |||| |||||||||||||| | |||| || |||||  ||||  |||||| ||||||||||||    
T  37926493 gagttaaatgatttaaagtttgagtttcaattgatatgaaagggataataaattaatttactacattcaggatgagtttggg-tatgggttcaga 37926586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 30 - 170
Target Start/End: Complemental strand, 9281129 - 9280989
Alignment:
Q  30 agagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtgaaatgatttaaagctt 129  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||| ||| |||| ||| |  |||||| ||| | ||| | || |||||||||  | ||    
T  9281129 agagtgtgagatatggaaggagaaaagagagtactatgataagtgaatgttatctgaaagattgagactctaattttgtcaatgtaatgatttagggttt 9281030  T
Q  130 gagtttctatctatataaaagggataataaacttattttct 170  Q
    || |||||||||||||||||||||||||||| |||||||||    
T  9281029 gaatttctatctatataaaagggataataaatttattttct 9280989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 42907734 - 42907862
Alignment:
Q  22 agaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtgaaatgatt 121  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| || |||| |||| ||| ||  ||||| ||||| | | ||||||||||||    
T  42907734 agaggccaagagtgtgagatatggaaggagaaaagatagaactatgataagtgtgtgtcatctgaaagactaagactctaactgtatgagtgaaatgatt 42907833  T
Q  122 taaagcttgagtttctatctatataaaag 150  Q
    ||  | |||||||||||| ||||||||||    
T  42907834 tagggtttgagtttctatttatataaaag 42907862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 25265408 - 25265235
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctg 107  Q
    |||||| |||| | ||||||| | ||||||||||||||||||||||||||||||||||||||||  || ||| |||| ||| |  |||||| | | | ||    
T  25265408 gtgaagaagaagaaagaggccgaaagtgtgagatatggaaggagaaaagagagaactatgataagcgactgtcatctgaaaaattgagactctgattgtg 25265309  T
Q  108 taagtgaaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttcttcattcgagatg 182  Q
    | ||| |||||||||| |  |||||||||||| |||||| || |||||||||| | ||||||| |||||||||||    
T  25265308 tgagtaaaatgatttagaatttgagtttctatttatatagaa-ggataataaattgattttctacattcgagatg 25265235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 12075893 - 12075725
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctg 107  Q
    |||| |||||| | |||| || |||||||||||||| |||||||||||||||||||||| |||| ||  ||| |||||||| || || ||| ||||| ||    
T  12075893 gtgatggagaagacagagaccgagagtgtgagatatagaaggagaaaagagagaactataataagtggatgtcatctaaaaaactgaaactctaactgtg 12075794  T
Q  108 taagtgaaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttcttcattc 176  Q
    |  ||||||||||| | || || ||||||||| ||||||||| || ||||||| | ||||||| |||||    
T  12075793 tgggtgaaatgattcagagttttagtttctatttatataaaatgggtaataaattgattttctacattc 12075725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 21714237 - 21714065
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctg 107  Q
    |||| |||||| ||| ||| | ||| ||||||||| | || |||||||||||||||||||| || ||||||| || | | | || |||||| ||| | ||    
T  21714237 gtgatggagaagagaaaggtcgagaatgtgagatacgaaaagagaaaagagagaactatgagaagtgagtgtcatttgagagactgagactctaattgtg 21714138  T
Q  108 taagtgaaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttcttcattcgaga 180  Q
    ||||||||||||||||  | |||||||||||| |||||||||| | ||||||| | ||||||| |||| ||||    
T  21714137 taagtgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattaattttctacatttgaga 21714065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 24 - 176
Target Start/End: Complemental strand, 33616361 - 33616209
Alignment:
Q  24 aggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtgaaatgattta 123  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||| || | |||||   ||||| | ||| ||| ||||||||||||||    
T  33616361 aggccgagagtgtgagatatggatggagaaaagagagaactatgataagtgagtgtcatatgaaatattaagactctgactgtgtgagtgaaatgattta 33616262  T
Q  124 aagcttgagtttctatctatataaaagggataataaacttattttcttcattc 176  Q
      | ||   ||| ||| |||||||||||| ||||||| | ||||||| |||||    
T  33616261 gggttttgatttttatttatataaaaggggtaataaattgattttctacattc 33616209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 8 - 183
Target Start/End: Complemental strand, 17113264 - 17113090
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctg 107  Q
    |||| |||||| |||| |||  ||||||||||||||||||||| |||||||| ||||||||||| ||||||| |||| ||| || |||||| | ||| ||    
T  17113264 gtgatggagaagagaggggctgagagtgtgagatatggaaggaaaaaagagataactatgataagtgagtgtcatctgaaagactgagactctgactttg 17113165  T
Q  108 taagtgaaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttcttcattcgagatgg 183  Q
      |||||||||||||||   ||| |||| ||| ||||| |||| | ||||||| | ||||||| |||||| |||||    
T  17113164 ggagtgaaatgatttaagatttgggtttttatttatatgaaagag-taataaattgattttctacattcgcgatgg 17113090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 30 - 191
Target Start/End: Complemental strand, 33516313 - 33516151
Alignment:
Q  30 agagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaac-tctgtaagtgaaatgatttaaagct 128  Q
    ||||||||| |||| |||||||||||||||||| |||||||| ||||||| |||| ||| ||| ||||| ||||   ||| ||||||||||||||  | |    
T  33516313 agagtgtgatatatagaaggagaaaagagagaattatgataagtgagtgtcatctgaaagaccaagactctaacgggtgtgagtgaaatgatttagggtt 33516214  T
Q  129 tgagtttctatctatataaaagggataataaacttattttcttcattcgagatggatttgggt 191  Q
    ||||||| ||| |||||||||||| ||||| | | ||||| | |||| |||| || |||||||    
T  33516213 tgagtttttatttatataaaaggggtaatacattgattttttacatttgagacgggtttgggt 33516151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 32 - 177
Target Start/End: Complemental strand, 21957051 - 21956907
Alignment:
Q  32 agtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtgaaatgatttaaagcttga 131  Q
    |||||||||||||||||||||||||| | ||||||||||| ||||||| |||||||| || || ||| | ||| ||  | ||||||||||||  | |||     
T  21957051 agtgtgagatatggaaggagaaaagatataactatgataaatgagtgtcatctaaaagactgacactctgactgtgcgaatgaaatgatttagggtttgg 21956952  T
Q  132 gtttctatctatataaaagggataataaacttattttcttcattcg 177  Q
    |||| ||| |||||||||||| ||||||| | ||||||| ||||||    
T  21956951 gtttttatttatataaaaggg-taataaattgattttctacattcg 21956907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 8 - 177
Target Start/End: Original strand, 36306618 - 36306787
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctg 107  Q
    |||| |||||| ||||||||| ||||||| ||||| |||| |||| |||||  || ||||||||| |||||| |||| ||| || |||||| ||| | ||    
T  36306618 gtgatggagaagagagaggccgagagtgttagataaggaaagagataagagttaaatatgataaccgagtgtcatctcaaagactgagactctaattgtg 36306717  T
Q  108 taagtgaaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttcttcattcg 177  Q
    ||||||||||||||||    ||   ||||||| |||||||||||| ||||||| | ||||||| ||||||    
T  36306718 taagtgaaatgatttatgatttcgatttctatttatataaaaggggtaataaattgattttctacattcg 36306787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 32 - 176
Target Start/End: Complemental strand, 8844042 - 8843898
Alignment:
Q  32 agtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtgaaatgatttaaagcttga 131  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||| |||| |||  |  ||||| | ||| ||| ||||||||||||||    || |    
T  8844042 agtgtgaggcatggaaggagaaaagagagaactatgataagtgagtgtcatctgaaagtctaagactgtgactgtgtgagtgaaatgatttaggatttaa 8843943  T
Q  132 gtttctatctatataaaagggataataaacttattttcttcattc 176  Q
    |||||||| ||||| |||||| ||||||| | ||||||| |||||    
T  8843942 gtttctatttatatgaaaggggtaataaattaattttctacattc 8843898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 32 - 176
Target Start/End: Complemental strand, 8857006 - 8856862
Alignment:
Q  32 agtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtgaaatgatttaaagcttga 131  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||| |||| |||  |  ||||| | ||| ||| ||||||||||||||    || |    
T  8857006 agtgtgaggcatggaaggagaaaagagagaactatgataagtgagtgtcatctgaaagtctaagactgtgactgtgtgagtgaaatgatttaggatttaa 8856907  T
Q  132 gtttctatctatataaaagggataataaacttattttcttcattc 176  Q
    |||||||| ||||| |||||| ||||||| | ||||||| |||||    
T  8856906 gtttctatttatatgaaaggggtaataaattaattttctacattc 8856862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 10 - 170
Target Start/End: Original strand, 36918959 - 36919118
Alignment:
Q  10 gaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgta 109  Q
    ||||||||| ||||||||| |||||||||   ||| |||||||||| |||||| ||||| || ||  ||| |||| |||  | |||||| || || |||     
T  36918959 gaaggagaagagagaggccgagagtgtgacgcatgtaaggagaaaaaagagaaatatgacaagtggatgtcatctgaaagtctgagactcta-ctgtgtg 36919057  T
Q  110 agtgaaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttct 170  Q
    |||||||||||||| || |||||||||||| |||||||||| | ||||||||| |||||||    
T  36919058 agtgaaatgatttagagtttgagtttctatttatataaaagtggtaataaactgattttct 36919118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 40420830 - 40420766
Alignment:
Q  15 agaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgt 79  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| || |||||||| |||||||    
T  40420830 agaagagagaggccaagaatgtgagatatggaaggagaaaagagaaaagtatgataagtgagtgt 40420766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 170
Target Start/End: Complemental strand, 9929430 - 9929267
Alignment:
Q  8 gtgaaggagaaa-agagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactct 106  Q
    |||| ||||||| |||| |||| | ||||||||| || ||| |||| |||||||||||||||||| ||| ||| |||||||| ||||||||| | ||| |    
T  9929430 gtgatggagaaagagaggggccgatagtgtgagagattgaatgagataagagagaactatgataagtgattgttatctaaaagaccgagactctgactgt 9929331  T
Q  107 gtaagtgaaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttct 170  Q
    || |||||||| ||||| || || ||||| ||| |||||  ||| | ||||||| | |||||||    
T  9929330 gtgagtgaaattatttagagtttcagtttatatttatatggaagaggtaataaattgattttct 9929267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 35304778 - 35304634
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctg 107  Q
    ||||| ||||| | ||||||| |||||||||||||||||||||||||| ||||||||  ||||| |||   | | || ||| || ||||||    |||||    
T  35304778 gtgaaagagaagaaagaggccgagagtgtgagatatggaaggagaaaaaagagaactgcgataagtgatcatcacctgaaagactgagactccggctctg 35304679  T
Q  108 taagtgaaatgatttaaagcttgagtttctatctatataaaaggg 152  Q
    |  ||||||||||||| || |||||||||| | ||||||||||||    
T  35304678 tgggtgaaatgatttagagtttgagtttctttttatataaaaggg 35304634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 30034531 - 30034570
Alignment:
Q  32 agtgtgagatatggaaggagaaaagagagaactatgataa 71  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  30034531 agtgtgagatatggaaggagaaaagagaaaactatgataa 30034570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 4652605 - 4652647
Alignment:
Q  20 agagaggccaagagtgtgagatatggaaggagaaaagagagaa 62  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  4652605 agagaggccgagagtgtgagatatgcaaggagaaaagagagaa 4652647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 25299094 - 25298934
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctg 107  Q
    |||| |||||| ||||| | | ||| |||||||||||||||||||||||||| || |||||||| | ||||| | || ||| |  | |||| ||||  |     
T  25299094 gtgatggagaagagagaagtcgagattgtgagatatggaaggagaaaagagaaaattatgataaataagtgtcaactgaaagattgcgactctaacgtta 25298995  T
Q  108 taagtgaaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttc 169  Q
    | |||||||||||||| || ||||| |||||| |||| ||||||| | ||||| | ||||||    
T  25298994 tgagtgaaatgatttagagtttgag-ttctatttataaaaaaggggtgataaattgattttc 25298934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 25940973 - 25941143
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctg 107  Q
    |||| |||||| ||||| ||| ||||||| |||| ||||||||||||  | ||||||||||||| ||| ||| |||| ||| ||  ||||| | |   ||    
T  25940973 gtgatggagaagagagaagccgagagtgtaagatttggaaggagaaa--atagaactatgataagtgaatgtcatctgaaagactaagactatgatcgtg 25941070  T
Q  108 taagtgaaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttcttcattcgaga 180  Q
    | |||||| |||||||   |||| |||||||| |||||||||||| | ||||| | ||||||| ||| |||||    
T  25941071 tgagtgaattgatttaggccttgggtttctatttatataaaaggggttataaattgattttctacatccgaga 25941143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 160
Target Start/End: Original strand, 37384131 - 37384258
Alignment:
Q  33 gtgtgagatatggaaggagaaa-agagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtgaaatgatttaaagcttga 131  Q
    |||||||||||||||||| ||| |||||||| |  ||||| || |||| || | ||| ||||| |||| |||  ||| ||||||||||||||  | ||||    
T  37384131 gtgtgagatatggaaggaaaaagagagagaaattagataagtgggtgttatttgaaagaccgaaactt-aaccgtgtgagtgaaatgatttagggtttga 37384229  T
Q  132 gtttctatctatataaaagggataataaa 160  Q
      |||||| ||||||||||||||||||||    
T  37384230 acttctatttatataaaagggataataaa 37384258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 149
Target Start/End: Original strand, 39086008 - 39086130
Alignment:
Q  30 agagtgtgagatatggaaggagaaaagaga---gaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtgaaatgatttaaag 126  Q
    |||||||||| ||||||||||||||| | |   |||||||||||| | ||||| |||| ||| || |||| | | ||| ||| ||||||||||||||  |    
T  39086008 agagtgtgagctatggaaggagaaaaaaaaaaagaactatgataagtaagtgtcatctgaaaaactgagagtctgactgtgtgagtgaaatgatttaggg 39086107  T
Q  127 cttgagtttctatctatataaaa 149  Q
     || ||||||||| |||||||||    
T  39086108 tttaagtttctatttatataaaa 39086130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 16574944 - 16575003
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatg 67  Q
    ||||||||||| | ||||||| ||||||||||| ||| || |||||||||||||| ||||    
T  16574944 gtgaaggagaagaaagaggccgagagtgtgagagatgaaatgagaaaagagagaaatatg 16575003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 43351631 - 43351560
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgt 79  Q
    |||| |||||| |||||  || ||||||||||||| |||||||||| |||||||||| ||| || |||||||    
T  43351631 gtgatggagaagagagataccgagagtgtgagataaggaaggagaagagagagaactctgagaattgagtgt 43351560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 322
Target Start/End: Complemental strand, 19883097 - 19883005
Alignment:
Q  230 tcccgtatccgtgtcttataatcgggggaaatccaaaccaatacttaaactcattcaaaacggaaaaaatctgtcaaattagacttggttcgg 322  Q
    |||||||||||||| ||| |||||||| ||| ||||||  ||||| |||| || ||||| ||| ||||| | |||||||| |  |||||||||    
T  19883097 tcccgtatccgtgttttaaaatcggggaaaacccaaactcatactcaaacccaatcaaagcgggaaaaacccgtcaaattgggtttggttcgg 19883005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 29664804 - 29664981
Alignment:
Q  14 gagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtg 113  Q
    ||||| ||||||||||||||||| |||||| ||| |||||||||||||| |||||||| ||||||| |||| |||||| |||||| | ||  ||||| ||    
T  29664804 gagaagagagaggccaagagtgttagatattgaaagagaaaagagagaattatgataagtgagtgtcatctgaaatactgagactctgacaatgtaaatg 29664903  T
Q  114 aaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttcttcattcgagatggatttgggt 191  Q
    |||||||||| || |||||||||||| || ||||||||| || |||| | ||||| | |||||| || || |||||||    
T  29664904 aaatgatttagagtttgagtttctatttaaataaaaggggtagtaaattgattttgtacattcgggacgggtttgggt 29664981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 35 - 170
Target Start/End: Complemental strand, 18452120 - 18451985
Alignment:
Q  35 gtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtgaaatgatttaaagcttgagtt 134  Q
    ||||| ||||||||||||||||||||||| ||||||| ||| | | |||| ||| ||||||||||||||| ||| ||||||||||| |||   | |  ||    
T  18452120 gtgagttatggaaggagaaaagagagaaccatgataagtgactatcatctgaaagaccgagactttaactgtgtgagtgaaatgatctaagattcgtatt 18452021  T
Q  135 tctatctatataaaagggataataaacttattttct 170  Q
    |||||  ||||||||||||||||||| | |||||||    
T  18452020 tctattaatataaaagggataataaattgattttct 18451985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 178
Target Start/End: Original strand, 35583944 - 35584113
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctg 107  Q
    |||||||||||  |||| ||| |||||||| |||||| |||||||||| |||||||  |||||| ||||||  |||| ||| || |||||| | ||| ||    
T  35583944 gtgaaggagaagggagatgccgagagtgtgggatatgaaaggagaaaacagagaacagtgataaatgagtgacatctgaaagactgagactctgactgtg 35584043  T
Q  108 taagtgaaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttcttcattcga 178  Q
    | ||  ||||||||||  | |||||||||||| |||||||||||| ||||||| | ||||| | |||||||    
T  35584044 tgagcaaaatgatttagggtttgagtttctatttatataaaaggg-taataaattgattttgtacattcga 35584113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 6809996 - 6810176
Alignment:
Q  13 ggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagt 112  Q
    |||||| ||||||||| | | ||||||| |||||||||||||||||||||||||||||| | || || | || ||||||||||      | | ||| |||    
T  6809996 ggagaagagagaggccgaaattgtgagacatggaaggagaaaagagagaactatgataaataagggtcaactgaaataccgag------attgtgtgagt 6810089  T
Q  113 gaaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttcttcattcgagatggatttgggttatgggttc 200  Q
    ||||| |||||| | ||| ||||||||  |||||||||||  |||||| | ||||||  |||||| ||||| |||||| |||||||||    
T  6810090 gaaatcatttaaggtttgggtttctattgatataaaaggggcaataaattgattttcaccattcgggatgggtttggg-tatgggttc 6810176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 40187918 - 40187842
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatct 84  Q
    |||| |||||| |||||| || |||||||||||||||||| |||| |||||||||||||||||| ||||||| ||||    
T  40187918 gtgatggagaagagagagaccgagagtgtgagatatggaatgagataagagagaactatgataagtgagtgtcatct 40187842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 17152996 - 17153059
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataa 71  Q
    ||||||||||| ||||||| | ||||||||||||||||||| |||||| |||||||||||||||    
T  17152996 gtgaaggagaagagagagggcgagagtgtgagatatggaagaagaaaatagagaactatgataa 17153059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 7350669 - 7350497
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctg 107  Q
    |||| |||||| |||| || | ||| ||||||||||||||||||| |||||||||||||||||| |||| ||  ||| ||| |  | |||| ||||| ||    
T  7350669 gtgatggagaagagaggggtcgagaatgtgagatatggaaggagataagagagaactatgataagtgagcgtcgtctcaaagattgcgactctaactatg 7350570  T
Q  108 taagtgaaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttcttcattcgaga 180  Q
    | ||| ||||||||||  | ||   || |||| |||||||||| ||||||||| | ||||||| |||| ||||    
T  7350569 tgagtaaaatgatttagggtttcgattactatttatataaaagcgataataaattaattttctacatttgaga 7350497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 38972754 - 38972929
Alignment:
Q  13 ggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagt 112  Q
    |||||| |||||| |  ||||||||| ||||| ||||||| |||||||||||||||||| ||||||| || | ||| |   ||||| ||||  ||| | |    
T  38972754 ggagaagagagagacagagagtgtgatatatgaaaggagataagagagaactatgataagtgagtgtcatatgaaagatttagactctaacagtgtgaat 38972853  T
Q  113 gaaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttcttcattcgagatggatttg 188  Q
     ||||||||||  | || |||||| || |||||||||||| ||||||| | ||||| | |||| ||||||| ||||    
T  38972854 caaatgatttagggtttcagtttcgatttatataaaagggttaataaattgattttatgcatttgagatgggtttg 38972929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 30 - 177
Target Start/End: Original strand, 24207539 - 24207683
Alignment:
Q  30 agagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtgaaatgatttaaagctt 129  Q
    |||||||||||||  |||||||||||||||||||||| |||| | ||||| |||| ||| || |||||| ||    ||| |||||| | |||||  | ||    
T  24207539 agagtgtgagataatgaaggagaaaagagagaactattataagttagtgtcatctgaaagactgagactcta---gtgtgagtgaagttatttagggttt 24207635  T
Q  130 gagtttctatctatataaaagggataataaacttattttcttcattcg 177  Q
     ||||| ||| |||||||||||  ||||||| | ||||||| ||||||    
T  24207636 tagtttttatttatataaaaggattaataaattaattttctacattcg 24207683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 160
Target Start/End: Complemental strand, 457606 - 457482
Alignment:
Q  32 agtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtgaaatgatttaaagcttga 131  Q
    ||||||||||||| ||||||| |||||||||| ||||||| ||||| | |||| ||| | | | |||    |||||||||||||||||||||    ||      
T  457606 agtgtgagatatgtaaggagataagagagaacgatgataagtgagtatcatctgaaagatcaatact----ctctgtaagtgaaatgatttaggattttg 457511  T
Q  132 gtttctatctatataaaagggataataaa 160  Q
    |||||||| |||||||||||  |||||||    
T  457510 gtttctatttatataaaaggtgtaataaa 457482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 16311536 - 16311486
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagag 58  Q
    |||| |||||| ||||||| | ||| |||||||||||||||||||||||||    
T  16311536 gtgatggagaagagagaggtcgagattgtgagatatggaaggagaaaagag 16311486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 16311431 - 16311383
Alignment:
Q  132 gtttctatctatataaaagggataataaacttattttcttcattcgaga 180  Q
    |||||||| |||||||||||||||||||| | ||||||  |||||||||    
T  16311431 gtttctatttatataaaagggataataaattgattttcaacattcgaga 16311383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 42729205 - 42729037
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctg 107  Q
    |||| |||||| |||||| || ||||||||| ||||||||||||| |||||||||||||||||| || |||| |||| ||| || |||||| | ||| ||    
T  42729205 gtgatggagaagagagagaccgagagtgtgatatatggaaggagacaagagagaactatgataagtgggtgttatctgaaagactgagactctgactgtg 42729106  T
Q  108 taagtgaaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttcttcattc 176  Q
    | ||||||||||||||  |  | ||||||||| |||||||||||||| ||||| ||||||||| |||||    
T  42729105 tgagtgaaatgatttagtgtataagtttctatttatataaaagggatgataaatttattttctacattc 42729037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 34 - 168
Target Start/End: Original strand, 8880302 - 8880436
Alignment:
Q  34 tgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtgaaatgatttaaagcttgagt 133  Q
    ||||||||||||||||||||||||||||| |||||||| | ||||| | || ||| || | |||| ||||| ||| ||||||||||||||||| ||||||    
T  8880302 tgtgagatatggaaggagaaaagagagaattatgataaataagtgtcaactgaaagactgcgactctaactttgtgagtgaaatgatttaaagtttgagt 8880401  T
Q  134 ttctatctatataaaagggataataaacttatttt 168  Q
    |||||| |||| ||||||| ||||||| |||||||    
T  8880402 ttctatttataaaaaaggggtaataaatttatttt 8880436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 15 - 160
Target Start/End: Original strand, 13692479 - 13692624
Alignment:
Q  15 agaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtga 114  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||  ||| ||| |   ||||| ||| | |||  ||||    
T  13692479 agaagagagaggccgagagtgtgagatatggaaggagaaaagagagaactataataagtgagtgtcgtctgaaagagtaagactctaattgtgtgggtga 13692578  T
Q  115 aatgatttaaagcttgagtttctatctatataaaagggataataaa 160  Q
    |||||||||  | ||  |||||||| ||||||||||||||||||||    
T  13692579 aatgatttagggttttggtttctatttatataaaagggataataaa 13692624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 14902966 - 14903031
Alignment:
Q  6 ttgtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataa 71  Q
    |||||| |||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  14902966 ttgtgatggagaagagagaggccgagattgtgagatatggaaggagaaaagagagaactatgataa 14903031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 25181037 - 25181184
Alignment:
Q  14 gagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtg 113  Q
    |||||||||||||||  ||||||||||||||||||||||||||| |||| | | |||| ||||| | |||| ||| ||  ||||| ||||| ||| ||||    
T  25181037 gagaaaagagaggccgggagtgtgagatatggaaggagaaaagaaagaattgtaataagtgagtatcatctgaaagacaaagactctaactatgtgagtg 25181136  T
Q  114 aaatgatttaa-agcttgagtttctatctatataaaagggataataaa 160  Q
    |||| |||||| || ||  |||||||| |||||| |||||||| ||||    
T  25181137 aaattatttaagagtttaggtttctatttatatagaagggatagtaaa 25181184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 36421623 - 36421766
Alignment:
Q  37 gagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtgaaatgatttaaagcttgagtttc 136  Q
    |||||||| |||||||||||||||||||||||||| ||| ||  |||| ||| |  |||||| | ||| ||| | |||||||||||| || | ||||||     
T  36421623 gagatatgaaaggagaaaagagagaactatgataagtgattgccatctgaaagattgagactctgactgtgtgaatgaaatgatttagagttcgagtttt 36421722  T
Q  137 tatctatataaaagggataataaacttattttcttcattcgaga 180  Q
    ||| ||||||| |||||||||||| | |||||||  ||||||||    
T  36421723 tatttatataagagggataataaattgattttctatattcgaga 36421766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 30 - 175
Target Start/End: Original strand, 39219108 - 39219253
Alignment:
Q  30 agagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtgaaatgatttaaagctt 129  Q
    |||||||| |||||| ||||||||| |||| ||||||||||| ||||||| || | ||| |  |||||| | ||| ||| || |||||||||||  | ||    
T  39219108 agagtgtgcgatatgaaaggagaaaggagataactatgataagtgagtgtcatatgaaaaaatgagactgtgactgtgtgagcgaaatgatttagggttt 39219207  T
Q  130 gagtttctatctatataaaagggataataaacttattttcttcatt 175  Q
    |||||||||| |||||||||| | ||||||| | ||||||| ||||    
T  39219208 gagtttctatttatataaaagaggtaataaattaattttctacatt 39219253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 25155066 - 25154998
Alignment:
Q  30 agagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagact 98  Q
    |||||||||||| || |||||||||| ||||||||||||||| ||||||| |||||||  |||||||||    
T  25155066 agagtgtgagatttgaaaggagaaaaaagagaactatgataagtgagtgtcatctaaatgaccgagact 25154998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 14890990 - 14891053
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataa 71  Q
    |||| |||||| ||||||| | ||| ||||||||||||||||||||||||||||||||| ||||    
T  14890990 gtgatggagaagagagaggtcgagattgtgagatatggaaggagaaaagagagaactattataa 14891053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 16903349 - 16903412
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataa 71  Q
    ||||||||||| | | ||| | ||||||||| ||||||||||||||||||||||||||||||||    
T  16903349 gtgaaggagaagaaaaaggtcgagagtgtgaaatatggaaggagaaaagagagaactatgataa 16903412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 5293666 - 5293608
Alignment:
Q  13 ggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataa 71  Q
    |||||| ||||||| | ||| |||||||||||||| || ||||||||||||||| ||||    
T  5293666 ggagaatagagaggtcgagattgtgagatatggaatgaaaaaagagagaactatcataa 5293608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 45460303 - 45460229
Alignment:
Q  10 gaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatct 84  Q
    ||||||||| ||||||| | |||||||||||||   |||||||||||||| || || ||||| ||||||| ||||    
T  45460303 gaaggagaagagagaggtcgagagtgtgagatacataaggagaaaagagaaaattacgataagtgagtgtcatct 45460229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 5283749 - 5283692
Alignment:
Q  113 gaaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttct 170  Q
    |||||||||||||| ||||||| |||| |||| ||||||||| ||||| | |||||||    
T  5283749 gaaatgatttaaagtttgagttcctatttatacaaaagggatgataaattgattttct 5283692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 5e-30; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 32 - 191
Target Start/End: Complemental strand, 11472949 - 11472791
Alignment:
Q  32 agtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtgaaatgatttaaagcttga 131  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| || |||||| |||||  || ||||||||||||||  | ||      
T  11472949 agtgtgagatatggaaggagataagagagaactatgataagtgagtgtcatctaaaagactgagactctaactacgtgagtgaaatgatttagggttttg 11472850  T
Q  132 gtttctatctatataaaagggataataaacttattttcttcattcgagatggatttgggt 191  Q
    |||||||| ||||||||||| |||||||| | |||||| ||||| | || ||||||||||    
T  11472849 gtttctatttatataaaaggtataataaattgattttc-tcatttgggacggatttgggt 11472791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 15 - 159
Target Start/End: Original strand, 37217843 - 37217987
Alignment:
Q  15 agaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtga 114  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||  ||||||| || | ||| ||||||||| | | | ||| ||| |    
T  37217843 agaaaagagaggccgagagtgtgagatatggaaggagagaagagagaactatgatatgtgagtgtcatatgaaaaaccgagactctgattgtgttagtaa 37217942  T
Q  115 aatgatttaaagcttgagtttctatctatataaaagggataataa 159  Q
    |||||||||    |||||||||||| |||| ||||| ||||||||    
T  37217943 aatgatttaggcattgagtttctatttatacaaaagagataataa 37217987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 34 - 149
Target Start/End: Original strand, 31345384 - 31345499
Alignment:
Q  34 tgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtgaaatgatttaaagcttgagt 133  Q
    ||||||||||||||| ||||||||||||| |||||||| ||||||| |||||||  || |||||||| | | ||| ||||||||||| || || ||||||    
T  31345384 tgtgagatatggaagaagaaaagagagaattatgataagtgagtgtcatctaaatgactgagactttgattgtgtgagtgaaatgatatagagtttgagt 31345483  T
Q  134 ttctatctatataaaa 149  Q
    |||||| |||||||||    
T  31345484 ttctatttatataaaa 31345499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 33 - 191
Target Start/End: Complemental strand, 6557962 - 6557802
Alignment:
Q  33 gtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtgaaatgatttaaagcttgag 132  Q
    ||||||||| ||||||||||| ||||||||||  || || ||||||| |||| ||| || |||||||| | | ||| |||||||||||||| || |||||    
T  6557962 gtgtgagatgtggaaggagaagagagagaacttagagaagtgagtgtcatctgaaagactgagactttgattgtgtgagtgaaatgatttagagtttgag 6557863  T
Q  133 tttctatctatataaaagggataataaacttattttctt--cattcgagatggatttgggt 191  Q
     |||||| | ||| ||| |||||||||||| ||||| ||   |||||||| ||||||||||    
T  6557862 attctatttctatgaaaaggataataaactgattttttttatattcgagacggatttgggt 6557802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 23533859 - 23533722
Alignment:
Q  15 agaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtga 114  Q
    |||||||||||||| ||| ||||||||||| || || || |||||||||| | |||| ||||||| |||| ||| || |||||| | ||| ||| |||||    
T  23533859 agaaaagagaggccgagaatgtgagatatgaaatgaaaatagagagaactgtaataaatgagtgtcatctgaaacactgagactctgactatgtgagtga 23533760  T
Q  115 aatgatttaaagcttgagtttctatctatataaaaggg 152  Q
    ||||||||| || ||| |||||||  |||| |||||||    
T  23533759 aatgatttagagtttgggtttctaattatacaaaaggg 23533722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 3156927 - 3157005
Alignment:
Q  20 agagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagact 98  Q
    ||||||||  ||||||||| ||||||||||| ||||||||||||||| |||| ||||||| |||||||| ||| |||||    
T  3156927 agagaggcggagagtgtgacatatggaaggaaaaaagagagaactataataagtgagtgtcatctaaaagaccaagact 3157005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 3773901 - 3774094
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctg 107  Q
    ||||||||||| ||||||||| ||||||||||  ||| |||||||||||| ||||||||||||| || |||| || | |||  | || ||| | ||| ||    
T  3773901 gtgaaggagaagagagaggccgagagtgtgaggcatgaaaggagaaaagatagaactatgataaatgggtgtcatatgaaagtctgaaactctgactgtg 3774000  T
Q  108 taagtgaaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttcttcattcgagatggatttgggttatgggttcag 202  Q
    | ||| |||||||||   | ||| ||| |||  |||||||||||| ||||||| | |||||||  ||||| || ||||||| | |||||||||||    
T  3774001 tgagtaaaatgattttgcgtttgggttcctaattatataaaaggggtaataaattgattttctaaattcgggacggatttgag-tatgggttcag 3774094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 15 - 144
Target Start/End: Complemental strand, 19440265 - 19440136
Alignment:
Q  15 agaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtga 114  Q
    |||||||||||||| | | ||||||||||| || || || |||||||||  | |||| ||||||| ||||  || || |||||| | ||| ||| |||||    
T  19440265 agaaaagagaggccgataatgtgagatatgaaatgaaaatagagagaaccgtaataaatgagtgtcatctggaacactgagactctgactatgtgagtga 19440166  T
Q  115 aatgatttaaagcttgagtttctatctata 144  Q
    ||||||||| || ||| |||||||| ||||    
T  19440165 aatgatttagagtttgggtttctatttata 19440136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 160
Target Start/End: Complemental strand, 43550676 - 43550525
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctg 107  Q
    |||| |||||| | ||||||| ||| |||||||||||||||||||||||| |||| | |||||| | ||||| |  | ||| || |||||| | ||  |     
T  43550676 gtgatggagaagatagaggccgagattgtgagatatggaaggagaaaagaaagaaatgtgataaataagtgttaattgaaagactgagactctgac-att 43550578  T
Q  108 taagtgaaatgatttaaagcttgagtttctatctatataaaagggataataaa 160  Q
    | ||||||||||||||  | ||| |||||||| |||||| ||||| |||||||    
T  43550577 tgagtgaaatgatttagggtttgggtttctatttatatagaaggggtaataaa 43550525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 7e-26; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 31601018 - 31600886
Alignment:
Q  19 aagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtgaaatg 118  Q
    |||||||||||| ||||||||||||||||||| | |||||||||||||||||| |||| || || | ||| ||  ||||| ||||| | | |||||||||    
T  31601018 aagagaggccaatagtgtgagatatggaaggatagaagagagaactatgataagtgagcgtcatatgaaagactaagactctaactgtatgagtgaaatg 31600919  T
Q  119 atttaaagcttgagtttctatctatataaaagg 151  Q
    ||||| || |||||||||||| |||||||||||    
T  31600918 atttagagtttgagtttctatttatataaaagg 31600886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 15 - 148
Target Start/End: Complemental strand, 34214910 - 34214778
Alignment:
Q  15 agaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtga 114  Q
    |||| ||||||||| | |||||||||||| |||||||||||||| |||||||||||| ||||||| || | ||| || |||||| | ||| ||| |||||    
T  34214910 agaagagagaggccgaaagtgtgagatatcgaaggagaaaagagcgaactatgataagtgagtgtcatgtgaaagactgagactctgactgtgttagtga 34214811  T
Q  115 aatgatttaaagcttgagtttctatctatataaa 148  Q
    ||||||||| || |||||||||||| ||||||||    
T  34214810 aatgatttagag-ttgagtttctatttatataaa 34214778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 12 - 177
Target Start/End: Original strand, 25210209 - 25210374
Alignment:
Q  12 aggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaag 111  Q
    ||||||| |||||| || ||||||||||  ||| |||| ||||||||| ||||||||||| ||||||  ||||||||| | ||||||   ||| ||| ||    
T  25210209 aggagaagagagagtccgagagtgtgagccatgaaaggtgaaaagagataactatgataagtgagtgccatctaaaattctgagactccgactgtgtgag 25210308  T
Q  112 tgaaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttcttcattcg 177  Q
    ||||||||||||  | |||||||||||| ||||||||| || ||| ||| | ||||||| ||||||    
T  25210309 tgaaatgatttagggtttgagtttctatttatataaaatgggtaacaaattgattttctacattcg 25210374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 35248642 - 35248498
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctg 107  Q
    |||| |||||| ||||||||||| ||||||||||||||||||||| ||||||||||||| ||||  |||||| || | ||| || |||||| |  || ||    
T  35248642 gtgatggagaagagagaggccaaaagtgtgagatatggaaggagataagagagaactataataagcgagtgtcatttgaaagactgagactctgtctgtg 35248543  T
Q  108 taagtgaaatgatttaaagcttgagtttctatctatataaaaggg 152  Q
    | ||||||||||||||  | || | ||||||| ||||||||||||    
T  35248542 tgagtgaaatgatttagggtttcattttctatttatataaaaggg 35248498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 6 - 160
Target Start/End: Original strand, 30696750 - 30696904
Alignment:
Q  6 ttgtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactc 105  Q
    ||||||||||||| |||||||   ||||||||||||| |  ||||||||| ||||||||||| |||  || ||| || | ||| ||||||||| |||||     
T  30696750 ttgtgaaggagaagagagaggttgagagtgtgagatacgagaggagaaaatagagaactatggtaagagaatgtcatatgaaagaccgagactctaactg 30696849  T
Q  106 tgtaagtgaaatgatttaaagcttgagtttctatctatataaaagggataataaa 160  Q
    ||| ||||| ||||||||  | |||| ||||||| ||||||||| || |||||||    
T  30696850 tgtgagtgacatgatttagggtttgaatttctatttatataaaatgggtaataaa 30696904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 29656992 - 29656844
Alignment:
Q  13 ggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgat-aactgagtgtgatctaaaataccgagactttaactctgtaag 111  Q
    |||||| ||||||||| ||| ||||||||||| ||||||| ||||||||| |||||| || | ||||| |||| ||| || |||||||| ||| ||| ||    
T  29656992 ggagaagagagaggccgagaatgtgagatatgtaaggagataagagagaattatgataaagtcagtgtcatctgaaagactgagactttgactgtgtgag 29656893  T
Q  112 tgaaatgatttaaagcttgagtttctatctatataaaagggataataaa 160  Q
    | ||||||||||  | |   |||| ||| ||||||||||||||||||||    
T  29656892 tcaaatgatttagggttatggtttttatttatataaaagggataataaa 29656844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 35409413 - 35409274
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctg 107  Q
    |||| |||||| ||||||||| ||||||||||||||||| | ||||||||  |||||||||||| ||||||| || |  || || |||||| | ||| ||    
T  35409413 gtgatggagaagagagaggccgagagtgtgagatatggacgaagaaaagaatgaactatgataagtgagtgtcatatgtaagactgagactctgactgtg 35409314  T
Q  108 taagtgaaatgatttaaagcttgagtttctatctatataa 147  Q
    ||||||||||  |||| || ||| |||| ||| |||||||    
T  35409313 taagtgaaatagtttagagtttgggtttttatttatataa 35409274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 34544563 - 34544403
Alignment:
Q  17 aaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtgaaa 116  Q
    ||||||||| |  |||||||||||||||||||||| |||||||||||||||| || ||| ||| |||||||| | ||||| | |   | ||| | |||||    
T  34544563 aaaagagagactgagagtgtgagatatggaaggagtaaagagagaactatgagaagtgattgtcatctaaaagaacgagagtctcgttgtgtgaatgaaa 34544464  T
Q  117 tgatttaaagcttgagtttctatctatataaaagggataataaacttattttcttcattcg 177  Q
    | |||||  | |||||||| ||| ||||||||| || |||||||   ||||||| ||||||    
T  34544463 ttatttagggtttgagtttttatttatataaaatgggtaataaatagattttctacattcg 34544403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 35965167 - 35965354
Alignment:
Q  13 ggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagt 112  Q
    |||||| ||||| | | ||||||||||||||||||||||| || ||||||||||||||| ||| ||| |||| ||| || ||||   | ||| | | |||    
T  35965167 ggagaagagagatgacgagagtgtgagatatggaaggagataaaagagaactatgataagtgaatgttatctgaaaaactgagatcctcactgtatgagt 35965266  T
Q  113 gaaatgatttaaagcttgagtttctatcta-tataaaagggataataaacttattttcttcattcgagatggatttgggttatgggttc 200  Q
    |||||||||||  | || | || |||| || ||||||||||  |||||| | ||||||| |||||| || || |||||| |||||||||    
T  35965267 gaaatgatttatggattcaattcctatttagtataaaaggggcaataaattgattttctacattcgggacgggtttggg-tatgggttc 35965354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 4961663 - 4961609
Alignment:
Q  8 gtgaaggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaa 62  Q
    |||| |||||| ||||||  | |||||||||||||||||||||||||||||||||    
T  4961663 gtgatggagaagagagagatcgagagtgtgagatatggaaggagaaaagagagaa 4961609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 180
Target Start/End: Original strand, 13954611 - 13954745
Alignment:
Q  46 aaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtgaaatgatttaaagcttgagtttctatctatat 145  Q
    ||||||||||||||||||||| |||| ||||||| |||| |||  | |||||| | ||   || ||||||||||||||  | | |||||||||| |||||    
T  13954611 aaggagaaaagagagaactatcataagtgagtgtcatctgaaagtctgagactctcaccgagtgagtgaaatgatttagggttcgagtttctatttatat 13954710  T
Q  146 aaaagggataataaacttattttcttcattcgaga 180  Q
    ||||| | ||||||  | ||||||| | |||||||    
T  13954711 aaaagtggtaataagttgattttctacgttcgaga 13954745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 180
Target Start/End: Original strand, 14095818 - 14095952
Alignment:
Q  46 aaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtgaaatgatttaaagcttgagtttctatctatat 145  Q
    ||||||||||||||||||||| |||| ||||||| |||| |||  | |||||| | ||   || ||||||||||||||  | | |||||||||| |||||    
T  14095818 aaggagaaaagagagaactatcataagtgagtgtcatctgaaagtctgagactctcaccgagtgagtgaaatgatttagggttcgagtttctatttatat 14095917  T
Q  146 aaaagggataataaacttattttcttcattcgaga 180  Q
    ||||| | ||||||  | ||||||| | |||||||    
T  14095918 aaaagtggtaataagttgattttctacgttcgaga 14095952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 13531879 - 13531939
Alignment:
Q  110 agtgaaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttct 170  Q
    ||||||||||||||  | |||||||||||| ||||||||| |||||||||| | |||||||    
T  13531879 agtgaaatgatttagggtttgagtttctatttatataaaatggataataaattgattttct 13531939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 14 - 152
Target Start/End: Complemental strand, 4835 - 4697
Alignment:
Q  14 gagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtg 113  Q
    ||||| |||||| || | ||||||| ||||||||||| |||||||||||||||||||| ||||||| |||||||| |||| |||| | ||| ||| ||||    
T  4835 gagaagagagagaccgatagtgtgaaatatggaaggaaaaaagagagaactatgataagtgagtgttatctaaaagaccgtgactctgactgtgtgagtg 4736  T
Q  114 aaatgatttaaagcttgagtttctatctatataaaaggg 152  Q
    |||||||||| || ||   ||||||| ||||||||||||    
T  4735 aaatgatttagagttttgatttctatttatataaaaggg 4697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 33 - 123
Target Start/End: Complemental strand, 3386092 - 3386002
Alignment:
Q  33 gtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtgaaatgattta 123  Q
    |||||||||||||||||||| ||||||||||| ||||||  |||||| | |||||| ||||||||||||||| ||||||||||||||||||    
T  3386092 gtgtgagatatggaaggagataagagagaactttgataagagagtgtcaactaaaagaccgagactttaactatgtaagtgaaatgattta 3386002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 27252401 - 27252546
Alignment:
Q  14 gagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtg 113  Q
    ||||| ||||||||| |||||||||||||||||||||| ||||||||||||| ||||| ||||||| |||| ||| || || ||| ||||| ||| ||||    
T  27252401 gagaagagagaggccgagagtgtgagatatggaaggag-aaagagagaactaagataagtgagtgtcatctgaaagactgatactctaactgtgtgagtg 27252499  T
Q  114 aaatgatttaaagcttgagtttctatctatataaaagggataataaa 160  Q
    ||||||||||    ||  |||||||| ||||||||| || |||||||    
T  27252500 aaatgatttatgattttggtttctatttatataaaatgggtaataaa 27252546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 34592990 - 34593112
Alignment:
Q  15 agaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtga 114  Q
    |||| ||||||| | |||||||||||||||||||||||||  | ||||||||||||| ||||||| || | ||| ||||||||  ||| | |||||||||    
T  34592990 agaagagagaggtcgagagtgtgagatatggaaggagaaacaatagaactatgataagtgagtgttatgtgaaagaccgagaccctaattgtgtaagtga 34593089  T
Q  115 aatgatttaaagcttgagtttctat 139  Q
    ||||||||  || ||||||||||||    
T  34593090 aatgattt--agtttgagtttctat 34593112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 26207119 - 26207194
Alignment:
Q  13 ggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaa 88  Q
    |||||| ||||||||| |||||||||||||||| |||||||||  ||||||||||| || ||||||| ||||||||    
T  26207119 ggagaagagagaggccgagagtgtgagatatgggaggagaaaaatgagaactatgacaagtgagtgtcatctaaaa 26207194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 37032350 - 37032191
Alignment:
Q  15 agaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtga 114  Q
    |||| ||||||||  ||||||||  |||| ||||||||||||| ||||||||||||| |  |||| |||| ||| ||||||||| | | | | | |||||    
T  37032350 agaagagagaggctgagagtgtggaatattgaaggagaaaagaaagaactatgataatt--gtgtcatctgaaagaccgagactctgattgtatgagtga 37032253  T
Q  115 aatgatttaaagcttgagtttctatctatataaaagggataataaacttattttcttcattc 176  Q
    |||||||||  | |||||||| ||| ||||||||| || ||||||| | ||||||| |||||    
T  37032252 aatgatttagggtttgagtttttatttatataaaatgggtaataaattaattttctacattc 37032191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 33 - 123
Target Start/End: Complemental strand, 3414769 - 3414679
Alignment:
Q  33 gtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtgaaatgattta 123  Q
    |||||||||||||||||||| |||| |||||| ||| ||  |||||| | |||||| | ||||||||| ||| ||| ||||||||||||||    
T  3414769 gtgtgagatatggaaggagataagatagaactttgagaagagagtgtcaactaaaagaacgagactttgactatgtgagtgaaatgattta 3414679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 170
Target Start/End: Complemental strand, 773056 - 772893
Alignment:
Q  8 gtgaaggagaaaagagaggccaa--gagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactc 105  Q
    ||||||||||| ||||||| | |  |||||||||| ||| ||||||||||||||||| ||||| ||  |||||| ||||| ||    |||||||  | |     
T  773056 gtgaaggagaagagagaggtcgatagagtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttagattg 772957  T
Q  106 tgtaagtgaaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttct 170  Q
    ||| |||||||||||| || | |||||||||||| |||| ||||||| ||||||| | |||||||    
T  772956 tgtgagtgaaatgattcaaggtttgagtttctatttatacaaaaggg-taataaattgattttct 772893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 27937564 - 27937629
Alignment:
Q  14 gagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgt 79  Q
    ||||| |||||| || |||||||||||||||||| ||||||||| |||||||| |||| |||||||    
T  27937564 gagaagagagagaccgagagtgtgagatatggaaagagaaaagaaagaactataataagtgagtgt 27937629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 40890214 - 40890254
Alignment:
Q  31 gagtgtgagatatggaaggagaaaagagagaactatgataa 71  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  40890214 gagtgtgagagatggaaggagaaaagagagaactatgataa 40890254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 200
Target Start/End: Complemental strand, 30904974 - 30904885
Alignment:
Q  110 agtgaaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttcttcattcgagatggatttgggttatgggttc 200  Q
    |||||||||||| |  | ||| |||||||| |||||||||||| || |||| | |||| || ||||||||| ||||||||| |||||||||    
T  30904974 agtgaaatgattaagggtttgggtttctatttatataaaaggggtagtaaattgatttcctacattcgagacggatttggg-tatgggttc 30904885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1322 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold1322
Description:

Target: scaffold1322; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 944 - 1106
Alignment:
Q  13 ggagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagt 112  Q
    |||||| |||||||   ||||||||||||||| |||||||||| |||||| |||||||| ||| ||| |||| ||| |  |||||||| ||   || |||    
T  944 ggagaagagagaggaggagagtgtgagatatgaaaggagaaaa-agagaattatgataagtgattgtcatcttaaagaatgagactttgaccacgtgagt 1042  T
Q  113 gaaatgatttaaagcttgagtttctatctatataaaagggataataaacttattttcttcattc 176  Q
    ||||||||||||   |||||||||||| ||||||||| || ||||||| | ||||||| |||||    
T  1043 gaaatgatttaagatttgagtttctatttatataaaatgggtaataaattaattttctacattc 1106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 308
Target Start/End: Original strand, 67797 - 67875
Alignment:
Q  230 tcccgtatccgtgtcttataatcgggggaaatccaaaccaatacttaaactcattcaaaacggaaaaaatctgtcaaat 308  Q
    |||||||||||| | ||| |||||||| ||||||||||| ||||| |||| || ||||| |||  |||| |||||||||    
T  67797 tcccgtatccgtattttaaaatcggggaaaatccaaacccatactcaaacccagtcaaatcggggaaaacctgtcaaat 67875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 308
Target Start/End: Original strand, 75640 - 75718
Alignment:
Q  230 tcccgtatccgtgtcttataatcgggggaaatccaaaccaatacttaaactcattcaaaacggaaaaaatctgtcaaat 308  Q
    |||||||||||| | ||| |||||||| ||||||||||| ||||| |||| || ||||| |||  |||| |||||||||    
T  75640 tcccgtatccgtattttaaaatcggggaaaatccaaacccatactcaaacccagtcaaatcggggaaaacctgtcaaat 75718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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