View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7781_low_4 (Length: 563)
Name: NF7781_low_4
Description: NF7781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7781_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Complemental strand, 6439156 - 6438606
Alignment:
| Q |
1 |
tatactattaaatgtagaactggagtgtgtaa-tagtaatgtttaagatatatcctaaaaatagtagtctaaataaacatattgaaagcagtatggtact |
99 |
Q |
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| T |
6439156 |
tatactattaaatgtagaactggagtgtgtaaatagtaatgtttaagatatatcctaaaaatagtagtctatataaacatattgaaagcagtatggtact |
6439057 |
T |
|
| Q |
100 |
aacagccacaggctcccttggatcaatgaactccactgaagcaacacctagcggtgattgaatctctccagacacagttggctgaaaacaatgagagaat |
199 |
Q |
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| T |
6439056 |
aacagccacaggctcccttggatcaatgaactccactgaagcaacacctagtggtgattgaatctctccagacacagttggctgaaaacaatgagagaat |
6438957 |
T |
|
| Q |
200 |
agcagaaaagaaaataaatgtaaatccggcggtatggatgtgtgatagcagaacaaaataatcagatggaaataagcatcgaatctttcaagaattaatt |
299 |
Q |
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| T |
6438956 |
agcagaaaagaaaataaatgtaaatccggtggtatggatgtgtgatagcagaacaaaataatcagatagaaataagcattgaatctttcaagaattaatt |
6438857 |
T |
|
| Q |
300 |
aaatccactaccacaagcaagcttaaagcttaagaatcaaatcgcctcgagttttggatcatttatgataagaaggctgaataaactgcacagtttattt |
399 |
Q |
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| T |
6438856 |
aaatccactaccacaagcaagcttaaagcttaagaatcaaatcgcctcgagttttggatcatttatgataagaaggctgaataaactgcacagtttattt |
6438757 |
T |
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| Q |
400 |
tctcatattgaacactatattctaaaaataacaaattataaaactaagtaacaagatatgaatatgtttccttaaataatatatgaaaattcaaatttta |
499 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6438756 |
tctcatattgaacactatattct-aaaataacaaattataaaactaagtaacaagatatgaatatgtttccttaaataatatttgaaaattcaaatttta |
6438658 |
T |
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| Q |
500 |
aactatttgaaacaaactattttaatgtcaaaaaattatattgtatgatgtc |
551 |
Q |
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| T |
6438657 |
aactatttgaaacaaactattttaatgtcaaaaaattatattgtatgatgtc |
6438606 |
T |
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