View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7781_low_7 (Length: 400)

Name: NF7781_low_7
Description: NF7781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7781_low_7
NF7781_low_7
[»] chr2 (15 HSPs)
chr2 (145-396)||(36444869-36445119)
chr2 (15-129)||(10163501-10163615)
chr2 (1-122)||(34392127-34392247)
chr2 (1-98)||(7381697-7381794)
chr2 (10-122)||(23863849-23863958)
chr2 (1-113)||(14565908-14566019)
chr2 (1-92)||(21603964-21604055)
chr2 (1-100)||(37357988-37358087)
chr2 (65-129)||(3668048-3668112)
chr2 (39-124)||(41095830-41095914)
chr2 (46-104)||(4779635-4779692)
chr2 (3-122)||(4775641-4775760)
chr2 (47-114)||(25275676-25275741)
chr2 (1-63)||(3668320-3668382)
chr2 (1-58)||(37811096-37811153)
[»] chr5 (16 HSPs)
chr5 (1-129)||(38010652-38010780)
chr5 (1-129)||(13478083-13478211)
chr5 (1-129)||(29989967-29990095)
chr5 (1-129)||(13015386-13015514)
chr5 (1-129)||(13086758-13086886)
chr5 (1-127)||(13421050-13421176)
chr5 (40-123)||(37881185-37881268)
chr5 (1-114)||(33858592-33858704)
chr5 (1-122)||(1826264-1826384)
chr5 (5-114)||(11607588-11607696)
chr5 (1-98)||(19357330-19357427)
chr5 (16-129)||(10292893-10293004)
chr5 (1-102)||(9827793-9827894)
chr5 (1-114)||(39570097-39570209)
chr5 (12-122)||(33271630-33271739)
chr5 (51-114)||(42148201-42148263)
[»] chr3 (18 HSPs)
chr3 (1-129)||(47186180-47186308)
chr3 (3-129)||(31187108-31187234)
chr3 (1-129)||(42664678-42664806)
chr3 (5-129)||(34029329-34029453)
chr3 (1-109)||(50934505-50934613)
chr3 (1-122)||(33509685-33509805)
chr3 (1-114)||(44380259-44380371)
chr3 (1-118)||(47426355-47426471)
chr3 (9-122)||(37742738-37742850)
chr3 (48-121)||(6022998-6023071)
chr3 (4-104)||(35094554-35094655)
chr3 (3-49)||(21963073-21963119)
chr3 (1-64)||(32319468-32319531)
chr3 (1-92)||(39498744-39498835)
chr3 (1-62)||(10018671-10018732)
chr3 (39-114)||(17466316-17466390)
chr3 (1-62)||(10179868-10179929)
chr3 (1-58)||(53440551-53440608)
[»] chr4 (18 HSPs)
chr4 (1-129)||(52012783-52012911)
chr4 (5-129)||(9799401-9799525)
chr4 (1-129)||(47943163-47943292)
chr4 (5-122)||(21260803-21260919)
chr4 (1-122)||(33249420-33249540)
chr4 (5-122)||(12473713-12473829)
chr4 (5-122)||(12528122-12528238)
chr4 (19-89)||(46719953-46720023)
chr4 (1-122)||(22343342-22343462)
chr4 (1-114)||(35869625-35869737)
chr4 (2-113)||(51811920-51812030)
chr4 (1-90)||(52910126-52910215)
chr4 (1-93)||(49999662-49999754)
chr4 (1-73)||(55590487-55590559)
chr4 (81-129)||(46720200-46720249)
chr4 (3-82)||(34829168-34829247)
chr4 (1-55)||(49998487-49998541)
chr4 (62-120)||(33174581-33174636)
[»] chr1 (14 HSPs)
chr1 (1-129)||(8809678-8809806)
chr1 (5-129)||(35998261-35998385)
chr1 (1-122)||(29119370-29119490)
chr1 (1-122)||(32676141-32676261)
chr1 (1-122)||(2569042-2569161)
chr1 (3-129)||(35534413-35534535)
chr1 (1-57)||(18056134-18056190)
chr1 (1-89)||(25161314-25161402)
chr1 (9-114)||(8462141-8462245)
chr1 (1-93)||(6223056-6223148)
chr1 (33-88)||(3688917-3688972)
chr1 (1-36)||(16679829-16679864)
chr1 (1-78)||(7214500-7214577)
chr1 (1-49)||(46435571-46435619)
[»] chr6 (7 HSPs)
chr6 (1-129)||(34245572-34245700)
chr6 (1-129)||(11113561-11113684)
chr6 (1-122)||(1211890-1212010)
chr6 (1-104)||(5403940-5404042)
chr6 (1-117)||(32644888-32645002)
chr6 (16-58)||(31030112-31030154)
chr6 (1-61)||(11753172-11753232)
[»] chr8 (8 HSPs)
chr8 (1-129)||(1514808-1514936)
chr8 (3-114)||(18168392-18168503)
chr8 (3-114)||(18631949-18632060)
chr8 (1-122)||(41179609-41179729)
chr8 (1-122)||(24337876-24337996)
chr8 (4-122)||(4708353-4708470)
chr8 (1-114)||(11254082-11254193)
chr8 (1-129)||(32825874-32826001)
[»] scaffold0032 (1 HSPs)
scaffold0032 (1-110)||(34199-34306)
[»] chr7 (5 HSPs)
chr7 (1-114)||(35341541-35341653)
chr7 (1-117)||(48250159-48250274)
chr7 (1-122)||(48072394-48072512)
chr7 (60-114)||(32694624-32694677)
chr7 (1-89)||(31306951-31307040)
[»] scaffold0229 (1 HSPs)
scaffold0229 (1-122)||(13051-13172)
[»] scaffold0263 (1 HSPs)
scaffold0263 (33-98)||(23168-23233)
[»] scaffold0519 (1 HSPs)
scaffold0519 (1-114)||(11200-11311)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 145 - 396
Target Start/End: Complemental strand, 36445119 - 36444869
Alignment:
Q  145 cacaatattggaccttgtttagacacgagtggaccaattcatcgtctatannnnnnncactcacgttacgggactctaaacaaggtaggtagtctgcatg 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||| |||||||||||||||||||||||||||||||||||    
T  36445119 cacaatattggaccttgtttagacacgagtggaccaattcatcgtctatatttttt-cactcacattacgggactctaaacaaggtaggtagtctgcatg 36445021  T
Q  245 tcacttgaatcaatccaaacttaattatatggacaaattggaactagtttatatgatgaagagtatcatctattataattcgttttacacctttatcttt 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36445020 tcacttgaatcaatccaaacttaattatatggacaaattggaactagtttatatgatgaagagtatcatctattataattcgttttacacctttatcttt 36444921  T
Q  345 atttattgtagttcttgaattttgtctaatagccctgatgtccatctcattg 396  Q
    ||||||||||||||||||||||||||||||||||||||| |||  |||||||    
T  36444920 atttattgtagttcttgaattttgtctaatagccctgatctcccactcattg 36444869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 10163501 - 10163615
Alignment:
Q  15 gtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccac 114  Q
    ||||||||||||||||| |||||||||||| | ||||||||||||  || |||||||||||||| |||||||||||||||||||||||||| ||||| ||    
T  10163501 gtaccaatgttatataacattgaccaataaaaatgtgccacatactgatattactttataaataatttatttgatatatgttttttaaagtatgtgctac 10163600  T
Q  115 atggcacaccttaat 129  Q
    |||||| ||||||||    
T  10163601 atggcataccttaat 10163615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 34392247 - 34392127
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||| ||||||||||| ||||||  |||| ||||| |||||||||||| ||||||| ||||||||||||| ||||||||||||||| ||||||    
T  34392247 tgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatcttactttataaatgctttatttgatatat-tttttt 34392149  T
Q  101 aaagtgtgtgccacatggcaca 122  Q
    |||| |||||||||||||||||    
T  34392148 aaagggtgtgccacatggcaca 34392127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 7381697 - 7381794
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttt 98  Q
    ||||||||||||||||||||||| |||||| ||||| ||||| |||||||||||  ||||||||||||||||||||| ||||||||||||||| ||||    
T  7381697 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaatgttactttataaattctttatttgatatatttttt 7381794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 23863958 - 23863849
Alignment:
Q  10 ttaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgt 109  Q
    |||||||||||||| |||||  |||||  |||| |||||||||||| ||||||||||||||||||||| |||||||||||||||  ||||||||| ||||    
T  23863958 ttaaggtaccaatggtatat--tattggtcaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatat-atttttaaagggtgt 23863862  T
Q  110 gccacatggcaca 122  Q
    |||||||||||||    
T  23863861 gccacatggcaca 23863849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 14566019 - 14565908
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||| ||||||||||||||||||||  ||||| |||  ||||||||| |||||||||| ||| ||||||| ||||| |||||||||| |||||||    
T  14566019 tgtgtaccactaaggtaccaatgttatatatcattgatcaagtagagtgtgctacataccaatattattttataagtacttcatttgatata-gtttttt 14565921  T
Q  101 aaagtgtgtgcca 113  Q
    ||||  |||||||    
T  14565920 aaaggatgtgcca 14565908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 21603964 - 21604055
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatata 92  Q
    ||||||||||||||||||||||| ||||||  |||||||||| | |||||  ||| |||||||||||||||||||||  |||||||||||||    
T  21603964 tgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaatgttactttataaatgttttatttgatata 21604055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 37358087 - 37357988
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    |||||| |||||||||||||||| ||||||  |||||| ||| |||||||| ||| || |||||||||||||||||| |||||||| |||| | ||||||    
T  37358087 tgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcacctatcaatgttactttataaatgctttatttaatatttttttttt 37357988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 3668112 - 3668048
Alignment:
Q  65 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaat 129  Q
    ||||||||||| | |||||||| ||||||||||||||||||| ||||||||||||||| ||||||    
T  3668112 ttactttataagtgctttattttatatatgttttttaaagtgagtgccacatggcacatcttaat 3668048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 124
Target Start/End: Complemental strand, 41095914 - 41095830
Alignment:
Q  39 caataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacacc 124  Q
    |||| ||||||  |||| ||||||||||||||||||||| |||||||||||| || |||||||||  || ||||||||||||||||    
T  41095914 caattagagtgcaccacctaccaatgttactttataaatgctttatttgatagat-ttttttaaaaggtatgccacatggcacacc 41095830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 4779635 - 4779692
Alignment:
Q  46 agtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaag 104  Q
    |||||||| | || |||||||||||||||||||||||||||||||||| ||||||||||    
T  4779635 agtgtgccgcctaacaatgttactttataaatactttatttgatatat-ttttttaaag 4779692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 4775641 - 4775760
Alignment:
Q  3 tgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttacttta-taaatactttatttgatatatgtttttta 101  Q
    |||||||||||| |||||||| |||||| ||||| ||||| ||| |||  ||  ||||||| |||||||| ||| |  ||||||| |||||| |||||||    
T  4775641 tgtaccattaagctaccaatgatatatattattggccaattagaatgtctcatctaccaatcttactttattaattgttttatttaatatat-tttttta 4775739  T
Q  102 aagtgtgtgccacatggcaca 122  Q
    |||  ||||||||||||||||    
T  4775740 aaggatgtgccacatggcaca 4775760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 25275741 - 25275676
Alignment:
Q  47 gtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccac 114  Q
    ||||||||| || |||||||||||| ||||||||||||||||||||  ||||||||||  ||||||||    
T  25275741 gtgtgccacctatcaatgttacttt-taaatactttatttgatata-cttttttaaaggatgtgccac 25275676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 3668382 - 3668320
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaat 63  Q
    |||||| |||||||||||||||||||||||| |||||    |||||||||| |||||| ||||    
T  3668382 tgtgtatcattaaggtaccaatgttatataacattgattggtaagagtgtgtcacatatcaat 3668320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 37811096 - 37811153
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacata 58  Q
    |||||||||||  | |||||||||||||||| |||| ||||| | |||||||||||||    
T  37811096 tgtgtaccattgggataccaatgttatataacattggccaatgaaagtgtgccacata 37811153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 7e-62; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 38010780 - 38010652
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38010780 tgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 38010681  T
Q  101 aaagtgtgtgccacatggcacaccttaat 129  Q
    |||||||||||||||||||||||||||||    
T  38010680 aaagtgtgtgccacatggcacaccttaat 38010652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 13478211 - 13478083
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  13478211 tgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacataccattgttactttataaatattttatttgatatatgtttttt 13478112  T
Q  101 aaagtgtgtgccacatggcacaccttaat 129  Q
    ||||||||||||||||| |||||||||||    
T  13478111 aaagtgtgtgccacatgtcacaccttaat 13478083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 29989967 - 29990095
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  29989967 tgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgatatatgtttttt 29990066  T
Q  101 aaagtgtgtgccacatggcacaccttaat 129  Q
    ||||||||||||||||| |||||||||||    
T  29990067 aaagtgtgtgccacatgtcacaccttaat 29990095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 13015386 - 13015514
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  13015386 tgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatattttatttgatatatatttttt 13015485  T
Q  101 aaagtgtgtgccacatggcacaccttaat 129  Q
    ||||| ||||||||||| |||| ||||||    
T  13015486 aaagtatgtgccacatgtcacatcttaat 13015514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 13086758 - 13086886
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| | ||||||    
T  13086758 tgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttattttataaatattttatttgatatgtatttttt 13086857  T
Q  101 aaagtgtgtgccacatggcacaccttaat 129  Q
    ||||||||||||||||| |||||||||||    
T  13086858 aaagtgtgtgccacatgtcacaccttaat 13086886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 13421176 - 13421050
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||||||| ||||||||||||| ||||| ||||||||||||  || ||| |||||||||||||||||| |||||||| |||||||||||||    
T  13421176 tgtgtaccattaaggtatcaatgttatataacattgatcaataagagtgtatcaaatatcaatgttactttataaatgctttatttaatatatgtttttt 13421077  T
Q  101 aaagtgtgtgccacatggcacacctta 127  Q
    ||||||| ||||||||| |||||||||    
T  13421076 aaagtgtatgccacatgacacacctta 13421050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 37881185 - 37881268
Alignment:
Q  40 aataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacac 123  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||| ||||    
T  37881185 aataagagtgtgccacataccaatgttactttataaatattttatttgatatatgtttttcaaaatgtgtgccacatggtacac 37881268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 33858704 - 33858592
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||||||||||||  ||||||  |||||||||| | |||||||||| |||||||||||||||||||||  |||||||||||||  ||||||    
T  33858704 tgtgtaccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatata-ctttttt 33858606  T
Q  101 aaagtgtgtgccac 114  Q
    |||| |||||||||    
T  33858605 aaagggtgtgccac 33858592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 1826264 - 1826384
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||| ||||||||| ||||||  ||||  |||| |||||||| ||| ||||||| ||||||| || || ||||||||||||||| ||||||    
T  1826264 tgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctaccaatattactttgtagatgctttatttgatatat-tttttt 1826362  T
Q  101 aaagtgtgtgccacatggcaca 122  Q
    ||||| ||||||||||||||||    
T  1826363 aaagtatgtgccacatggcaca 1826384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 11607696 - 11607588
Alignment:
Q  5 taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaag 104  Q
    ||||||||||||||||||| ||||||  |||||||||| | |||||||||| ||||||| |||||||||||||  |||||||||||||  ||||||||||    
T  11607696 taccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctaccaatattactttataaatgttttatttgatata-cttttttaaag 11607598  T
Q  105 tgtgtgccac 114  Q
     |||||||||    
T  11607597 ggtgtgccac 11607588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 19357427 - 19357330
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttt 98  Q
    |||||||||||| |||||||||| ||||||  |||| ||||| |||||||||||| ||||||| ||||||||||||| ||||||||||||||| ||||    
T  19357427 tgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattactttataaatgctttatttgatatatttttt 19357330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 10292893 - 10293004
Alignment:
Q  16 taccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccaca 115  Q
    |||||||||||||||| |||| ||||||||| |||||||| ||| ||||||| ||| ||| |  ||||||||  |||| |||||||||| |||||||||     
T  10292893 taccaatgttatataacattggccaataagaatgtgccacgtactaatgttattttgtaagtgttttatttg--atattttttttaaagggtgtgccacg 10292990  T
Q  116 tggcacaccttaat 129  Q
    ||||||||||||||    
T  10292991 tggcacaccttaat 10293004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 9827793 - 9827894
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||||||||||||| ||||||   ||   |||| ||||||| |||| ||||||| |||||||||||||| |||||||||||||| ||||||    
T  9827793 tgtgtaccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctaccaatattactttataaatattttatttgatatatctttttt 9827892  T
Q  101 aa 102  Q
    ||    
T  9827893 aa 9827894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 39570209 - 39570097
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    |||||| |||||| ||| ||||| ||||||  |||| ||||| |||||||| ||| |||||||||||||||||||||  |||||||||||||  ||||||    
T  39570209 tgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatata-ctttttt 39570111  T
Q  101 aaagtgtgtgccac 114  Q
    |||| |||||||||    
T  39570110 aaagggtgtgccac 39570097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 33271630 - 33271739
Alignment:
Q  12 aaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgc 111  Q
    |||||||||||| ||||||  |||| ||||| |||||||| ||  || ||||||||||| |||||| ||||||||||||||| ||||||||||  || ||    
T  33271630 aaggtaccaatgatatatatcattggccaattagagtgtgtcatctatcaatgttacttgataaatgctttatttgatatat-ttttttaaaggatgcgc 33271728  T
Q  112 cacatggcaca 122  Q
    ||| |||||||    
T  33271729 cacgtggcaca 33271739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 42148201 - 42148263
Alignment:
Q  51 gccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccac 114  Q
    ||||| |||||||||||||||||||||  |||||||||||||| |||||||||| |||| ||||    
T  42148201 gccacctaccaatgttactttataaatgttttatttgatatat-ttttttaaagggtgtaccac 42148263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 7e-62; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 47186180 - 47186308
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47186180 tgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 47186279  T
Q  101 aaagtgtgtgccacatggcacaccttaat 129  Q
    |||||||||||||||||||||||||||||    
T  47186280 aaagtgtgtgccacatggcacaccttaat 47186308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 3 - 129
Target Start/End: Complemental strand, 31187234 - 31187108
Alignment:
Q  3 tgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaa 102  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||    
T  31187234 tgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgatatatattttttaa 31187135  T
Q  103 agtgtgtgccacatggcacaccttaat 129  Q
    ||||||||||||||| |||||||||||    
T  31187134 agtgtgtgccacatgtcacaccttaat 31187108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 42664678 - 42664806
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||    
T  42664678 tgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacataccaatgttattttataaatgttttatttgatatatgtttttt 42664777  T
Q  101 aaagtgtgtgccacatggcacaccttaat 129  Q
    ||||||||||||||||| |||||||||||    
T  42664778 aaagtgtgtgccacatgtcacaccttaat 42664806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 34029453 - 34029329
Alignment:
Q  5 taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaag 104  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||    
T  34029453 taccattaaggtaccaatgttatataacattgatcaataagagtgtgccacatactaatgttactttataaatgttttatttgatatatgttttttaaag 34029354  T
Q  105 tgtgtgccacatggcacaccttaat 129  Q
    |||||| |||||  |||||||||||    
T  34029353 tgtgtgtcacatatcacaccttaat 34029329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 50934505 - 50934613
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||||||||||||| ||||||  |||| ||||| |||||||||||| ||||||||||||||||||||| | ||||||||||||| || |||    
T  50934505 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatgttactttataaatgcattatttgatatattttattt 50934604  T
Q  101 aaagtgtgt 109  Q
    |||| ||||    
T  50934605 aaagggtgt 50934613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 33509685 - 33509805
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    |||||||||||||||||| |||  ||||||  |||||||||| |||||||||||| ||||||| |||||||||| || ||||||||||| ||| ||||||    
T  33509685 tgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctaccaatattactttatagatgctttatttgatgtat-tttttt 33509783  T
Q  101 aaagtgtgtgccacatggcaca 122  Q
    ||||  ||||||||||||||||    
T  33509784 aaaggatgtgccacatggcaca 33509805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 44380259 - 44380371
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||||||||||||| |||||| ||||||||||| | |||||| ||| || |||| ||||||||||||| ||||||||||||||  ||||||    
T  44380259 tgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcacctatcaatattactttataaatgctttatttgatata-ctttttt 44380357  T
Q  101 aaagtgtgtgccac 114  Q
    |||| |||||||||    
T  44380358 aaagggtgtgccac 44380371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 47426355 - 47426471
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||||||||||||  ||||||  |||| ||||| |||||||| ||| || ||||||||||||||| || ||||||||||||||| ||||||    
T  47426355 tgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcacctatcaatgttactttatagatgctttatttgatatat-tttttt 47426453  T
Q  101 aaagtgtgtgccacatgg 118  Q
    |||| |||||||||||||    
T  47426454 aaagggtgtgccacatgg 47426471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 37742738 - 37742850
Alignment:
Q  9 attaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtg 108  Q
    ||||||||||||||| ||||||  ||||  |||| ||||| |||||| |||||||||||| |||  ||| ||||||||||||||| |||||||||| |||    
T  37742738 attaaggtaccaatggtatatatcattggtcaattagagtatgccacctaccaatgttacattaccaatgctttatttgatatat-ttttttaaagagtg 37742836  T
Q  109 tgccacatggcaca 122  Q
    |||||| |||||||    
T  37742837 tgccacgtggcaca 37742850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 6022998 - 6023071
Alignment:
Q  48 tgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcac 121  Q
    |||||||||||| ||||||| ||| ||| ||||||||||||||||| |||||||||| ||||||||| ||||||    
T  6022998 tgtgccacatactaatgttattttgtaagtactttatttgatatatattttttaaagggtgtgccacgtggcac 6023071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 35094554 - 35094655
Alignment:
Q  4 gtaccattaaggtaccaatgttatataatattgaccaataa--gagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttta 101  Q
    |||||||||| |||||| || ||||||  |||||| ||| |  |||| |||||| |||||||||||||||||||||| |||||||||||||| |||||||    
T  35094554 gtaccattaaagtaccagtggtatataccattgactaattatagagtatgccacctaccaatgttactttataaatattttatttgatatat-tttttta 35094652  T
Q  102 aag 104  Q
    |||    
T  35094653 aag 35094655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 21963119 - 21963073
Alignment:
Q  3 tgtaccattaaggtaccaatgttatataatattgaccaataagagtg 49  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||    
T  21963119 tgtaccattaaggtatcaatgttatataacattgaccaataagagtg 21963073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 32319531 - 32319468
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatg 64  Q
    ||||||||||||||||||||||| ||||||  |||| ||||| |||||||||||| ||| ||||    
T  32319531 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctacaaatg 32319468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 39498835 - 39498744
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatata 92  Q
    ||||||||||||| ||||||||| |||||| |||||  |||| | |||||| ||| || | |||||| |||||||||| ||||||| |||||    
T  39498835 tgtgtaccattaaagtaccaatgatatatattattggtcaattaaagtgtgtcacctatcgatgttattttataaatattttatttaatata 39498744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 10018732 - 10018671
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaa 62  Q
    ||||||||||||| ||||||||||||||||  ||||  |||||| |||||||||| ||||||    
T  10018732 tgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctaccaa 10018671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 17466316 - 17466390
Alignment:
Q  39 caataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccac 114  Q
    |||| |||||||| ||| || ||||||||||||||||||  |||| ||||||||| |||||||||| || ||||||    
T  17466316 caattagagtgtgtcacctatcaatgttactttataaatgatttagttgatatat-ttttttaaagggtatgccac 17466390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 10179929 - 10179868
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaa 62  Q
    ||||||||||||| ||||||||| ||||||  ||||  |||| |||||||||||| ||||||    
T  10179929 tgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccacctaccaa 10179868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 53440551 - 53440608
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacata 58  Q
    |||||||||||  | |||||||||||||||| | |||||||| | |||||||||||||    
T  53440551 tgtgtaccattgggataccaatgttatataacactgaccaatgaaagtgtgccacata 53440608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 52012783 - 52012911
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  52012783 tgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatgttttatttgatatatgtttttt 52012882  T
Q  101 aaagtgtgtgccacatggcacaccttaat 129  Q
    ||||||||||||||||| |||||||||||    
T  52012883 aaagtgtgtgccacatgtcacaccttaat 52012911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 9799525 - 9799401
Alignment:
Q  5 taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaag 104  Q
    ||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||    
T  9799525 taccattaaggtaccaatgttatataacattgaccaacaagaatgtgccacataccaatgttactttataaatgttttatttaatatatgttttttaaag 9799426  T
Q  105 tgtgtgccacatggcacaccttaat 129  Q
    |||||| |||||| |||||||||||    
T  9799425 tgtgtgtcacatgtcacaccttaat 9799401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 47943163 - 47943292
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatatt-gaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttt 99  Q
    |||||||||||||  |||||||||||||||||||| ||||||||| | |||||||||||||||| ||| |||||||||| ||||||||||||||||||||    
T  47943163 tgtgtaccattaaaataccaatgttatataatatttgaccaataaaaatgtgccacataccaatattattttataaatattttatttgatatatgttttt 47943262  T
Q  100 taaagtgtgtgccacatggcacaccttaat 129  Q
    |||| ||||||||||||| |||||||||||    
T  47943263 taaaatgtgtgccacatgtcacaccttaat 47943292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 21260803 - 21260919
Alignment:
Q  5 taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaag 104  Q
    ||||||||||||||||||| ||||||  |||| ||||| |||||||| ||| |||||||||||||||||||||  |||||||||||||| ||||||||||    
T  21260803 taccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatatat-ttttttaaag 21260901  T
Q  105 tgtgtgccacatggcaca 122  Q
     |||||||||||||||||    
T  21260902 ggtgtgccacatggcaca 21260919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 33249540 - 33249420
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    |||||||||||||||||| |||| ||||||  |||| ||||| |||||||| ||| ||||||||||||||||||||| |||||||||||||||  |||||    
T  33249540 tgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgttactttataaatgctttatttgatatat-attttt 33249442  T
Q  101 aaagtgtgtgccacatggcaca 122  Q
    |||| |||||||||||||||||    
T  33249441 aaagggtgtgccacatggcaca 33249420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 12473713 - 12473829
Alignment:
Q  5 taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaag 104  Q
    ||||||||||||||||||| ||||||  |||| ||||| |||||||||||| |||||||||||||||||| || ||||||||||||||| ||||||||||    
T  12473713 taccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatat-ttttttaaag 12473811  T
Q  105 tgtgtgccacatggcaca 122  Q
     ||||| |||||| ||||    
T  12473812 ggtgtggcacatgacaca 12473829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 12528122 - 12528238
Alignment:
Q  5 taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaag 104  Q
    ||||||||||||||||||| ||||||  |||| ||||| |||||||||||| |||||||||||||||||| || ||||||||||||||| ||||||||||    
T  12528122 taccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatat-ttttttaaag 12528220  T
Q  105 tgtgtgccacatggcaca 122  Q
     ||||| |||||| ||||    
T  12528221 ggtgtggcacatgacaca 12528238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 46719953 - 46720023
Alignment:
Q  19 caatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgat 89  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46719953 caatgttatataacattgaccaataagagtgtgccacatacaaatgttactttataaatactttatttgat 46720023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 22343342 - 22343462
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||||||| ||||| ||||||  |||||||||| |||||||| ||  || |||||||||||||||||| ||||||||||||||| | ||||    
T  22343342 tgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtgtcatctatcaatgttactttataaatgctttatttgatatat-tatttt 22343440  T
Q  101 aaagtgtgtgccacatggcaca 122  Q
    ||||  ||||||||||| ||||    
T  22343441 aaaggatgtgccacatgacaca 22343462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 35869737 - 35869625
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||||||||||||| ||||||  |||||||||| | | |||||||| ||||||||||||| |||||||  |||||||||||||  ||||||    
T  35869737 tgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgttactatataaatgttttatttgatata-ctttttt 35869639  T
Q  101 aaagtgtgtgccac 114  Q
    |||| |||||||||    
T  35869638 aaagggtgtgccac 35869625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 2 - 113
Target Start/End: Original strand, 51811920 - 51812030
Alignment:
Q  2 gtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttta 101  Q
    |||||||||||||||| ||| | |||||| ||||| ||||| ||||| |||||| |||||||||||||||||||||  ||| |||||||||| |||||||    
T  51811920 gtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaatgttactttataaattttttttttgatatat-tttttta 51812018  T
Q  102 aagtgtgtgcca 113  Q
    ||| ||||||||    
T  51812019 aagggtgtgcca 51812030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 52910215 - 52910126
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgata 90  Q
    |||||||||| | |||||||||||||||||  |||| ||||| | |||||||||| ||||||| ||||||||||||| ||||||||||||    
T  52910215 tgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctaccaatattactttataaatgctttatttgata 52910126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 49999754 - 49999662
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatat 93  Q
    |||||||||| ||| ||| |||||||| |   ||||  |||| |||||||| ||||||||||||||| ||||||||| |||||||||||||||    
T  49999754 tgtgtaccatcaagatactaatgttatgtgtcattggtcaattagagtgtgtcacataccaatgttattttataaatgctttatttgatatat 49999662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 55590487 - 55590559
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttat 73  Q
    ||||||||||||||||||||||| ||||||  ||||| |||| | |||||| ||| |||||||||||||||||    
T  55590487 tgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatgttactttat 55590559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 46720200 - 46720249
Alignment:
Q  81 ttatttgatatatgtttt-ttaaagtgtgtgccacatggcacaccttaat 129  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  46720200 ttatttgatatatgtttttttaaagtgtgtgccacatgacacaccttaat 46720249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 34829247 - 34829168
Alignment:
Q  3 tgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatacttt 82  Q
    ||||| ||||||||||||||| ||||||  | || ||||| | |||||| ||| ||||||||||||||||||||| ||||    
T  34829247 tgtactattaaggtaccaatgatatatatcaatggccaattaaagtgtgtcacctaccaatgttactttataaatgcttt 34829168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 49998487 - 49998541
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccac 55  Q
    |||||||||||||||||||||| |||||||  |||| ||||| || |||||||||    
T  49998487 tgtgtaccattaaggtaccaatattatatatcattggccaattagggtgtgccac 49998541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 33174581 - 33174636
Alignment:
Q  62 atgttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggca 120  Q
    ||||||||||||||||  |||||||||||||   ||||||||| ||||||||| |||||    
T  33174581 atgttactttataaatgttttatttgatata---tttttaaagggtgtgccacgtggca 33174636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 8809806 - 8809678
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||    
T  8809806 tgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaatgttactttataaatgttttatttgatatatgtttttt 8809707  T
Q  101 aaagtgtgtgccacatggcacaccttaat 129  Q
    ||||||||||||||||| |||||||||||    
T  8809706 aaagtgtgtgccacatgtcacaccttaat 8809678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 5 - 129
Target Start/End: Original strand, 35998261 - 35998385
Alignment:
Q  5 taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaag 104  Q
    ||||||||||||||||||||||||||| |||||  ||||||||||||||||||| |||||||| ||||||| |  ||||||| |||||||||||||||||    
T  35998261 taccattaaggtaccaatgttatataacattgattaataagagtgtgccacatatcaatgttattttataagtgttttattttatatatgttttttaaag 35998360  T
Q  105 tgtgtgccacatggcacaccttaat 129  Q
    |||||||||||||||||| ||||||    
T  35998361 tgtgtgccacatggcacatcttaat 35998385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 29119490 - 29119370
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||||||||||||| ||||||  |||| ||||| |||||||||||| || || |||||||||||| || ||||||||||||||| ||||||    
T  29119490 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctatcattgttactttatagatgctttatttgatatat-tttttt 29119392  T
Q  101 aaagtgtgtgccacatggcaca 122  Q
    |||| |||||||||||||||||    
T  29119391 aaagggtgtgccacatggcaca 29119370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 32676141 - 32676261
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||||||||||||| ||||||  |||| ||||| ||| ||  |||| ||||||||||||||||||||| ||||||||||||||| ||||||    
T  32676141 tgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaatgttactttataaatgctttatttgatatat-tttttt 32676239  T
Q  101 aaagtgtgtgccacatggcaca 122  Q
    ||||  ||||||||||||||||    
T  32676240 aaagcatgtgccacatggcaca 32676261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 2569042 - 2569161
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||||||||||||| ||||||  |||  ||||| |||||||||||| |||||||||||| |||  ||| ||||||||||||||  ||||||    
T  2569042 tgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctaccaatgttacattaccaatgctttatttgatata--tttttt 2569139  T
Q  101 aaagtgtgtgccacatggcaca 122  Q
    |||| ||||||||  |||||||    
T  2569140 aaagggtgtgccatgtggcaca 2569161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 3 - 129
Target Start/End: Original strand, 35534413 - 35534535
Alignment:
Q  3 tgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaa 102  Q
    |||| ||||||| |||||||||||||||| ||||  || | |||||||||||||||| ||||| | ||||||| |  ||||||| |||    ||||||||    
T  35534413 tgtatcattaagataccaatgttatataacattggacactgagagtgtgccacatactaatgtcaatttataagtgttttatttaata----ttttttaa 35534508  T
Q  103 agtgtgtgccacatggcacaccttaat 129  Q
    || |||||||||||| |||||||||||    
T  35534509 agggtgtgccacatgacacaccttaat 35534535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 18056190 - 18056134
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacat 57  Q
    |||||||||||||  ||||||||||||||||||||||||||| | ||||||||||||    
T  18056190 tgtgtaccattaaactaccaatgttatataatattgaccaatgaaagtgtgccacat 18056134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 25161314 - 25161402
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgat 89  Q
    ||||||||||||| ||  ||||| ||||||  |||||||||| | |||||||||| || ||||||||||||||||||  ||||||||||    
T  25161314 tgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccacctaacaatgttactttataaatgttttatttgat 25161402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 8462141 - 8462245
Alignment:
Q  9 attaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtg 108  Q
    ||||| ||||||||| ||||||  ||||| |||| | |||||||||| ||||||||||| |||||||||  ||||||| |||||  |||||||||| | |    
T  8462141 attaaagtaccaatggtatatatcattgatcaattatagtgtgccacctaccaatgttattttataaatgttttatttaatata-cttttttaaagggcg 8462239  T
Q  109 tgccac 114  Q
    ||||||    
T  8462240 tgccac 8462245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 6223056 - 6223148
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatat 93  Q
    ||||||||||||| ||| ||||||||||||  ||||| |||| |  ||||| || ||| |||||||| ||||||| || ||||||||||||||    
T  6223056 tgtgtaccattaaagtatcaatgttatatatcattgatcaattaaggtgtgtcatatatcaatgttattttataagtattttatttgatatat 6223148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 3688972 - 3688917
Alignment:
Q  33 attgaccaataagagtgtgccacataccaatgttactttataaatactttatttga 88  Q
    |||||||||| ||||||| | || |||||||||||||||||||||  |||||||||    
T  3688972 attgaccaattagagtgtacaacctaccaatgttactttataaatgttttatttga 3688917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 16679864 - 16679829
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattg 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  16679864 tgtgtaccattaaggtaccaatgttatatactattg 16679829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 7214577 - 7214500
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaata 78  Q
    |||||||||||||||||| |||  |||||| |||||  |||| |||||||| ||| || | || ||||||||||||||    
T  7214577 tgtgtaccattaaggtactaatagtatatattattggtcaattagagtgtgtcacctatcgatattactttataaata 7214500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 46435619 - 46435571
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtg 49  Q
    ||||||||||||||||||||||| ||||||  |||| ||||| ||||||    
T  46435619 tgtgtaccattaaggtaccaatggtatatacaattggccaattagagtg 46435571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 34245572 - 34245700
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    |||||||||||||||||  |||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34245572 tgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaatgttactttataaatactttatttgatatatgtttttt 34245671  T
Q  101 aaagtgtgtgccacatggcacaccttaat 129  Q
    ||||||||||||||||| |||||||||||    
T  34245672 aaagtgtgtgccacatgacacaccttaat 34245700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 11113561 - 11113684
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||||||||||||| ||||||| |||||| |||||||||||| ||||||| ||||||||||| ||| | |||||||||||     ||||||    
T  11113561 tgtgtaccattaaggtaccaatgctatataacattgactaataagagtgtgtcacatactaatgttactttgtaagtgctttatttgat-----tttttt 11113655  T
Q  101 aaagtgtgtgccacatggcacaccttaat 129  Q
    ||||  || ||||||||||||||||||||    
T  11113656 aaaggatgcgccacatggcacaccttaat 11113684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 1212010 - 1211890
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||||||||||||| ||||||  |||| | ||| || ||||||||| |  ||||||||||||||  || ||||||||||||||| ||||||    
T  1212010 tgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatatat-tttttt 1211912  T
Q  101 aaagtgtgtgccacatggcaca 122  Q
    |||| ||||||||| |||||||    
T  1211911 aaagggtgtgccacgtggcaca 1211890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 5404042 - 5403940
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    |||||||||||||||||| |||| |||||| |||||  || | ||||| |||||| |||||||||||||||||| ||  |||||||||||||| ||||||    
T  5404042 tgtgtaccattaaggtactaatggtatatattattggtcagttagagtctgccacctaccaatgttactttatagatgttttatttgatatat-tttttt 5403944  T
Q  101 aaag 104  Q
    ||||    
T  5403943 aaag 5403940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 32645002 - 32644888
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    |||||||||||||| || | ||  ||||||  |||| ||||| |  ||||| ||| ||| |||||||||||| |||||||||||||| ||||| ||||||    
T  32645002 tgtgtaccattaagatatcgatagtatatatcattggccaattaaggtgtgtcacctacaaatgttacttta-aaatactttatttgttatat-tttttt 32644905  T
Q  101 aaagtgtgtgccacatg 117  Q
    |||| ||||||||||||    
T  32644904 aaagggtgtgccacatg 32644888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 31030112 - 31030154
Alignment:
Q  16 taccaatgttatataatattgaccaataagagtgtgccacata 58  Q
    |||||||||||||||||||||  |||||| |||||||||||||    
T  31030112 taccaatgttatataatattggtcaataacagtgtgccacata 31030154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 11753172 - 11753232
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacatacca 61  Q
    ||||||||||||||||||||||| ||||||  || | ||||| ||||||| |||| |||||    
T  11753172 tgtgtaccattaaggtaccaatggtatataccatcggccaattagagtgtcccacctacca 11753232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 9e-43; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 1514808 - 1514936
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||  |||||||||||||| ||||||    
T  1514808 tgtgtaccattaaggtaccaatgttatataacattgatcaataagagtgtaccacataccaatgttactttataaatgttttatttgatatatatttttt 1514907  T
Q  101 aaagtgtgtgccacatggcacaccttaat 129  Q
    ||| ||||| ||| ||| |||||||||||    
T  1514908 aaaatgtgtaccatatgtcacaccttaat 1514936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 18168392 - 18168503
Alignment:
Q  3 tgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaa 102  Q
    ||||||||||||||||||||| ||||||  ||||| |||| ||||||| |||| ||||||| ||||||||||||||||||||||||||||| ||||||||    
T  18168392 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatatattttttttaa 18168491  T
Q  103 agtgtgtgccac 114  Q
    ||  ||||||||    
T  18168492 aggatgtgccac 18168503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 18631949 - 18632060
Alignment:
Q  3 tgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaa 102  Q
    ||||||||||||||||||||| ||||||  ||||| |||| ||||||| |||| ||||||| ||||||||||||||||||||||||||||| ||||||||    
T  18631949 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatatattttttttaa 18632048  T
Q  103 agtgtgtgccac 114  Q
    ||  ||||||||    
T  18632049 aggatgtgccac 18632060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 41179729 - 41179609
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||||||||||||| ||||||  |||| ||||| | |||||| ||| |||| ||||||||||||||||  ||||||| |||||| ||||||    
T  41179729 tgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgttactttataaatgttttatttaatatat-tttttt 41179631  T
Q  101 aaagtgtgtgccacatggcaca 122  Q
    || |  ||||||||||||||||    
T  41179630 aatggatgtgccacatggcaca 41179609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 24337996 - 24337876
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||| ||||||||| ||||| ||||||  || |  |||| |||||||||||  |||||||||||||||||| || |||||||||||||||  |||||    
T  24337996 tgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaatgttactttatagatgctttatttgatatat-attttt 24337898  T
Q  101 aaagtgtgtgccacatggcaca 122  Q
    |||| ||||||||||| |||||    
T  24337897 aaagggtgtgccacatagcaca 24337876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 4708470 - 4708353
Alignment:
Q  4 gtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaa 103  Q
    |||||| |||||||||||||  |||||  ||   ||||| | |||||| ||| |||||||||||||||||||||  ||||||||||||||  ||||||||    
T  4708470 gtaccactaaggtaccaatggcatatatcatgcgccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatat-atttttaaa 4708372  T
Q  104 gtgtgtgccacatggcaca 122  Q
    | ||||||||| |||||||    
T  4708371 gggtgtgccacgtggcaca 4708353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 11254193 - 11254082
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    |||||||||||||  |||||||| ||||||  |||||||| ||  ||| | |||| |||||||||||||||||||||  |||||||||||||   |||||    
T  11254193 tgtgtaccattaaattaccaatgatatatatcattgaccattat-agtataccacctaccaatgttactttataaatgttttatttgatata-cattttt 11254096  T
Q  101 aaagtgtgtgccac 114  Q
    |||| |||||||||    
T  11254095 aaagggtgtgccac 11254082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 32826001 - 32825874
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||| ||| ||||||| ||||  |||| ||||| ||||| || |||||| |||||||| ||||||  |  |||||||||||||| |||||     
T  32826001 tgtgtaccattaaagtatcaatgttgtataccattggccaattagagtatgtcacatatcaatgttattttatatgtgttttatttgatatat-ttttta 32825903  T
Q  101 aaagtgtgtgccacatggcacaccttaat 129  Q
    ||||  |||| |||||| |||| ||||||    
T  32825902 aaaggttgtgtcacatgacacatcttaat 32825874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 34199 - 34306
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||||||||||||| |||||| ||||| ||||| |||||||||||| ||||||| |||||||||||||| |||||||||||||  ||||||    
T  34199 tgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttaccaatattactttataaatattttatttgatata--tttttt 34296  T
Q  101 aaagtgtgtg 110  Q
    |||| |||||    
T  34297 aaagggtgtg 34306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 35341541 - 35341653
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||||||||||||| ||||||  |||||||||| | |||||||||| |||||||||||||||||||||  |||||||||||||  ||||||    
T  35341541 tgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatata-ctttttt 35341639  T
Q  101 aaagtgtgtgccac 114  Q
    |||| |||||||||    
T  35341640 aaagggtgtgccac 35341653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 48250159 - 48250274
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||||||||||||| ||||||  ||||  |||| |||||||||||| |||||||||||||||||| || ||||||||||||| | ||||||    
T  48250159 tgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatgttactttatagatgctttatttgatat-tttttttt 48250257  T
Q  101 aaagtgtgtgccacatg 117  Q
    |||| || ||| |||||    
T  48250258 aaagggtatgctacatg 48250274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 48072394 - 48072512
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||| |||||||||||||  |  ||||  ||||| |||| ||||||||||||||  |||||||| |||||||||| |||||||||| ||| ||||||    
T  48072394 tgtgtactattaaggtaccaa--tagtataccattgatcaattagagtgtgccacatttcaatgttattttataaatattttatttgatgtat-tttttt 48072490  T
Q  101 aaagtgtgtgccacatggcaca 122  Q
    |||| ||||||||| |||||||    
T  48072491 aaagggtgtgccacgtggcaca 48072512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 32694677 - 32694624
Alignment:
Q  60 caatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccac 114  Q
    |||||||||||||||||| ||||||||||||||| |||||||||| |||||||||    
T  32694677 caatgttactttataaattctttatttgatatat-ttttttaaagggtgtgccac 32694624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 31307040 - 31306951
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaata-agagtgtgccacataccaatgttactttataaatactttatttgat 89  Q
    ||||||||||||| ||| ||||| ||||||  |||| |||||  | ||||||| || ||||||||||||||||||||| |||||||||||    
T  31307040 tgtgtaccattaaagtatcaatgatatatatcattgtccaatttaaagtgtgctacctaccaatgttactttataaatgctttatttgat 31306951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 13172 - 13051
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    ||||||||||||||||||||||| ||||||  |||| | ||| || ||||||||| |  ||||||||||||||  || ||||||||||||||| ||||||    
T  13172 tgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatatat-tttttt 13074  T
Q  101 aaagtg-tgtgccacatggcaca 122  Q
    |||| | |||||||| |||||||    
T  13073 aaagggttgtgccacgtggcaca 13051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 98
Target Start/End: Complemental strand, 23233 - 23168
Alignment:
Q  33 attgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttt 98  Q
    |||| ||||| |||||||||||| ||||||| |||||||||||||| |||||||||||||| ||||    
T  23233 attggccaattagagtgtgccacctaccaattttactttataaatattttatttgatatatttttt 23168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 11200 - 11311
Alignment:
Q  1 tgtgtaccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 100  Q
    |||||||||||||  |||||||| ||||||  |||||||| ||  ||| | |||| |||||||||||||||||||||  |||||||||||||   |||||    
T  11200 tgtgtaccattaaattaccaatgatatatatcattgaccattat-agtataccacctaccaatgttactttataaatgttttatttgatata-cattttt 11297  T
Q  101 aaagtgtgtgccac 114  Q
    |||| |||||||||    
T  11298 aaagggtgtgccac 11311  T

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