View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7781_low_8 (Length: 373)
Name: NF7781_low_8
Description: NF7781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7781_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 31263465 - 31263643
Alignment:
| Q |
18 |
tttatctagtttgtgggatttaatgttctgtattttcaatgaaaatcttcacttttttatttaatcctagtttgtgggattttaatgtgttctgttatgt |
117 |
Q |
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| T |
31263465 |
tttatctagtttgtgggatttaatgttctgtattttcaatgaaaatcttcacttttttatttaatcctagtttgtggga-tttaatgtgttctgttatgt |
31263563 |
T |
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| Q |
118 |
ccaatgaaattcttcacnnnnnnnatttaatcctagtttctgagatttaatgttttgttatgtctagtggaaatcttcac |
197 |
Q |
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| T |
31263564 |
ccaatgaaattcttcactttttttatttaatcctagtttctgagatttaatgttttgttatgtctagtggaaatcttcac |
31263643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 251 - 365
Target Start/End: Original strand, 31263697 - 31263811
Alignment:
| Q |
251 |
ggtacttcattggagtggttattaaaattttgtagtgttcaaccgatattttcatataaccaacagcttgaagtagatgagcacaattgtacaagcaagt |
350 |
Q |
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| T |
31263697 |
ggtacttcattggagtggttattaaaattttgtagtgttcaaccgatattttcatataaccaacagcttgaagcagatgagcataattgtacaagcaaat |
31263796 |
T |
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| Q |
351 |
aatctatttcttttc |
365 |
Q |
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| T |
31263797 |
aatctatttcttttc |
31263811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 15853888 - 15853835
Alignment:
| Q |
269 |
ttattaaaattttgtagtgttcaaccgatattttcatataaccaacagcttgaa |
322 |
Q |
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| T |
15853888 |
ttattaaaattttgtagtgttcaacaaatattttcaattatccaatagcttgaa |
15853835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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