View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7781_low_9 (Length: 366)
Name: NF7781_low_9
Description: NF7781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7781_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 31524805 - 31524673
Alignment:
| Q |
16 |
acatcaaaattggagggggttggaagcatatggttgaagcacgcaacataccaataggtgtaagtaacgaagatcggtgctccaagggttgggaacaatg |
115 |
Q |
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| T |
31524805 |
acatcaaaattggagggggttggaagcgtatggttgaagcacgcaacataccaataggtgtaagtaacgaagatcggtgctccaagggttgggaacaatg |
31524706 |
T |
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| Q |
116 |
acacactctacctagaagtcagacgctcgtctg |
148 |
Q |
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| T |
31524705 |
atacaatctacctagaagtcagacgcccgtctg |
31524673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 245 - 350
Target Start/End: Complemental strand, 31524578 - 31524473
Alignment:
| Q |
245 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgacatcatttgaattgaaagaagcattttggcctttggcatttcgaattaagatgcgt |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31524578 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgatatcatttgaattgaaagaagcattttggcctttggcattttgaattaagatgcgt |
31524479 |
T |
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| Q |
345 |
tgtttg |
350 |
Q |
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||||| |
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| T |
31524478 |
cgtttg |
31524473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 33366697 - 33366821
Alignment:
| Q |
17 |
catcaaaattggagggggttggaagcatatggttgaagcacgcaacataccaataggtgtaagtaacgaagatcggtgctccaagggttgggaacaatga |
116 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33366697 |
catcaaaattggagggggttggaagcgtatggttgaagcacgtaacataccaataggtgtaagtaacgaagatcggtgctccaagggttgggaacaatga |
33366796 |
T |
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| Q |
117 |
cacactctacctagaagtcagacgc |
141 |
Q |
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|||||||||||||||||||||||| |
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| T |
33366797 |
tacactctacctagaagtcagacgc |
33366821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 245 - 350
Target Start/End: Original strand, 33366922 - 33367027
Alignment:
| Q |
245 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgacatcatttgaattgaaagaagcattttggcctttggcatttcgaattaagatgcgt |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33366922 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgatatcatttgaattgaaagaagcattttggcctttggcattttgaattaagatgcgt |
33367021 |
T |
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| Q |
345 |
tgtttg |
350 |
Q |
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||||| |
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| T |
33367022 |
cgtttg |
33367027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 49194761 - 49194637
Alignment:
| Q |
17 |
catcaaaattggagggggttggaagcatatggttgaagcacgcaacataccaataggtgtaagtaacgaagatcggtgctccaagggttgggaacaatga |
116 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
49194761 |
catcaaaattggagggggttggaagcgtatgtttgaagcacgtaacataccaataggtgtaagtaacgaagttcggtgctccaagggttgggaacaatga |
49194662 |
T |
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| Q |
117 |
cacactctacctagaagtcagacgc |
141 |
Q |
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||| |||||||||||||||||||| |
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| T |
49194661 |
tacattctacctagaagtcagacgc |
49194637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 245 - 350
Target Start/End: Complemental strand, 49194536 - 49194431
Alignment:
| Q |
245 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgacatcatttgaattgaaagaagcattttggcctttggcatttcgaattaagatgcgt |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49194536 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgatatcatttgaattgaaagaagcattttggcctttggcattttgaattaagatgcgt |
49194437 |
T |
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| Q |
345 |
tgtttg |
350 |
Q |
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||||| |
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| T |
49194436 |
cgtttg |
49194431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 42934086 - 42934027
Alignment:
| Q |
16 |
acatcaaaattggagggggttggaagcatatggttgaagcacgcaacataccaataggtg |
75 |
Q |
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|||| |||||||| ||||||||||||| |||| ||||||| | |||||| |||||||||| |
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| T |
42934086 |
acattaaaattggtgggggttggaagcgtatgcttgaagcgctcaacattccaataggtg |
42934027 |
T |
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