View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7782_high_8 (Length: 457)

Name: NF7782_high_8
Description: NF7782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7782_high_8
NF7782_high_8
[»] chr6 (3 HSPs)
chr6 (109-272)||(1145292-1145455)
chr6 (268-438)||(1145075-1145245)
chr6 (1-113)||(1145496-1145609)
[»] chr1 (9 HSPs)
chr1 (268-430)||(8300456-8300621)
chr1 (275-429)||(18279614-18279769)
chr1 (137-272)||(18279422-18279557)
chr1 (269-430)||(8296879-8297042)
chr1 (208-272)||(8297090-8297154)
chr1 (136-272)||(8300668-8300804)
chr1 (355-407)||(8296678-8296729)
chr1 (17-54)||(27801560-27801597)
chr1 (17-54)||(30725023-30725060)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 109 - 272
Target Start/End: Complemental strand, 1145455 - 1145292
Alignment:
Q  109 tgacacaatcagttttggttttttatcaaatggatgataatcaatgtggctaagtttgataatattttgacgtttgttagaagtatgaaaagctttacac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1145455 tgacacaatcagttttggttttttatcaaatggatgataatcaatgtggctaagtttgataatattttgacgtttgttagaagtatgaaaagctttacac 1145356  T
Q  209 tgaattttctcgagtctatcaagtatctggaggatagaatggaattaaaagggaacttagaaag 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1145355 tgaattttctcgagtctatcaagtatctggaggatagaatggaattaaaagggaacttagaaag 1145292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 268 - 438
Target Start/End: Complemental strand, 1145245 - 1145075
Alignment:
Q  268 gaaagctttatgcggatttatctcgagtaaaatttcttgccttgttaatttcattttcaaagtttgaagcatgaaaaactctgtttaatattctgaaaat 367  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1145245 gaaagctttatgcggatttatctcgagtaaaatatcttgcctggttaatttcattttcaaagtttgaagcatgaaaaactctgtttaatattctgaaaat 1145146  T
Q  368 tttgctcttgatgtaacctctgctttgctaatttcatgtcttgtatggtaattattcagggaggtgcaaaa 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1145145 tttgctcttgatgtaacctctgctttgctaatttcatgtcttgtatggtaattattcagggaggtgcaaaa 1145075  T

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Target: chr6; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 1145609 - 1145496
Alignment:
Q  1 gttccatctttttatgatttcccaattgtgccctttcattgcatcataaaagacc-nnnnnnnnntacaccagaagtctggaacgttgtgcatagctaac 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||    
T  1145609 gttccatctttttatgatttcccaattgtgccctttcattgcatcataaaagaccaaaaaaaaaatacaccagaagtctggaacgttgtgcatagctaac 1145510  T
Q  100 atgagagaatgaca 113  Q
    ||||||||||||||    
T  1145509 atgagagaatgaca 1145496  T

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Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 268 - 430
Target Start/End: Complemental strand, 8300621 - 8300456
Alignment:
Q  268 gaaagctttatgcggatttatctcgagtaaaatttcttgccttgttaatttcattttcaaagtttgaagcatgaaaaactctg--tttaatattctgaaa 365  Q
    |||| ||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||    
T  8300621 gaaatctttacgcagatctatctcgagtaaaatttcttgccttgttaatttcattttcaaagtttgaagaatgaaaaactctgtctttaatattctgaaa 8300522  T
Q  366 attttgctcttgatg-taacctctgctttgctaatttcatgtcttgtatggtaattattcagggag 430  Q
    ||||||||| || || |||||||||| || |||||| |||||| ||||||||||||||||||||||    
T  8300521 attttgctcatggtgttaacctctgcattcctaattccatgtcctgtatggtaattattcagggag 8300456  T

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Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 275 - 429
Target Start/End: Original strand, 18279614 - 18279769
Alignment:
Q  275 ttatgcggatttatctcgagtaaaatttcttgccttgttaatttcattttcaaagtttgaagcatgaaaaactctgtttaatattctgaaaattttgctc 374  Q
    ||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| | ||||||    
T  18279614 ttatgcgtacttatctcgagtaaaatttcttggcttgttaatttcattttcaaagtttgaagcatgaaaaactgtctttaatattctgaaagtattgctc 18279713  T
Q  375 ttgatg-taacctctgctttgctaatttcatgtcttgtatggtaattattcaggga 429  Q
     ||||| |||||||||| | |||||||||||||| ||||||||| |||||||||||    
T  18279714 atgatgttaacctctgcatagctaatttcatgtcctgtatggtacttattcaggga 18279769  T

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Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 137 - 272
Target Start/End: Original strand, 18279422 - 18279557
Alignment:
Q  137 aatggatgataatcaatgtggctaagtttgataatattttgacgtttgttagaagtatgaaaagctttacactgaattttctcgagtctatcaagtatct 236  Q
    |||||||||||||||||||||| |||||||||||||||||||||| | || ||  ||| ||||||||||| |||||||||||||||||||| |||| | |    
T  18279422 aatggatgataatcaatgtggcaaagtttgataatattttgacgtatattggatatatcaaaagctttacgctgaattttctcgagtctattaagtcttt 18279521  T
Q  237 ggaggatagaatggaattaaaagggaacttagaaag 272  Q
    ||||||||||||||||||||||||||||||||||||    
T  18279522 ggaggatagaatggaattaaaagggaacttagaaag 18279557  T

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Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 269 - 430
Target Start/End: Complemental strand, 8297042 - 8296879
Alignment:
Q  269 aaagctttatgcggatttatctcgagtaaaatttcttgccttgttaatttcattttcaaagtttgaagcatgaaaaactctg--tttaatattctgaaaa 366  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||        |||||||||||||||||||||||  ||||| ||||||||||    
T  8297042 aaagctttatgcggatttatctctagtaaaatttcttgccttgttaatttc--------agtttgaagcatgaaaaactctgtatttaacattctgaaaa 8296951  T
Q  367 ttttgctcttgatg--------taacctctgctttgctaatttcatgtcttgtatggtaattattcagggag 430  Q
    || ||||| |||||        |||||||||| |||||||||||||||| ||||||||| ||||||||||||    
T  8296950 ttctgctcatgatgttaagtgttaacctctgcattgctaatttcatgtcctgtatggtacttattcagggag 8296879  T

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Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 8297154 - 8297090
Alignment:
Q  208 ctgaattttctcgagtctatcaagtatctggaggatagaatggaattaaaagggaacttagaaag 272  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  8297154 ctgaattttctcgagtctatcaagtctatggaggatagaatggaattaaaagggaacttagaaag 8297090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 136 - 272
Target Start/End: Complemental strand, 8300804 - 8300668
Alignment:
Q  136 aaatggatgataatcaatgtggctaagtttgataatattttgacgtttgttagaagtatgaaaagctttacactgaattttctcgagtctatcaagtatc 235  Q
    |||||||||||||| || |||| |  ||| ||||||  ||||  ||||||||||  ||| |||| |||||| ||||||||||| ||||||||||||| |     
T  8300804 aaatggatgataattaaggtggttgtgttggataattctttgctgtttgttagatatatcaaaaactttacgctgaattttcttgagtctatcaagtcta 8300705  T
Q  236 tggaggatagaatggaattaaaagggaacttagaaag 272  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  8300704 tggaggatagagtggaattaaaagggaactcagaaag 8300668  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 8296729 - 8296678
Alignment:
Q  355 atattctgaaaattttgctcttgatgtaa-cctctgctttgctaatttcatgtc 407  Q
    ||||||||||||||||  ||||||||| | ||||||||||||||||||||||||    
T  8296729 atattctgaaaatttt--tcttgatgttatcctctgctttgctaatttcatgtc 8296678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 27801560 - 27801597
Alignment:
Q  17 atttcccaattgtgccctttcattgcatcataaaagac 54  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  27801560 attttccaattgtaccctttcattgcatcataaaagac 27801597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 30725060 - 30725023
Alignment:
Q  17 atttcccaattgtgccctttcattgcatcataaaagac 54  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  30725060 attttccaattgtaccctttcattgcatcataaaagac 30725023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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