View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7782_low_1 (Length: 902)

Name: NF7782_low_1
Description: NF7782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7782_low_1
NF7782_low_1
[»] chr5 (4 HSPs)
chr5 (424-686)||(1242951-1243216)
chr5 (187-352)||(1242710-1242879)
chr5 (762-892)||(1243282-1243412)
chr5 (480-535)||(6689898-6689953)
[»] chr7 (5 HSPs)
chr7 (249-342)||(41521189-41521282)
chr7 (424-535)||(41521003-41521114)
chr7 (481-535)||(1824588-1824642)
chr7 (183-216)||(41521310-41521343)
chr7 (477-538)||(7964510-7964571)
[»] chr8 (4 HSPs)
chr8 (183-316)||(473268-473410)
chr8 (424-531)||(473452-473559)
chr8 (477-535)||(1838414-1838472)
chr8 (477-535)||(30587335-30587393)
[»] chr4 (1 HSPs)
chr4 (474-535)||(3607935-3607996)
[»] chr1 (2 HSPs)
chr1 (474-535)||(23920807-23920870)
chr1 (424-524)||(22206441-22206541)
[»] chr6 (1 HSPs)
chr6 (481-535)||(6632744-6632798)


Alignment Details
Target: chr5 (Bit Score: 148; Significance: 1e-77; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 424 - 686
Target Start/End: Original strand, 1242951 - 1243216
Alignment:
Q  424 gtttccttataaagaaattatttacaaagagtatcaaggaaggttgttcctaaaagatgacaaataacaaacttatcaaaatactaagtttgctttatta 523  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  1242951 gtttccttataaagaaattatttacaaagagtatcaag-aaggttgttcctaaaagatgacaaatgacaaacttaccaaaatattaagtttgctttatta 1243049  T
Q  524 ttatctatagataaagtaacnnnnnnnnnnnnnnnnnttatacatcgtcat-------acatataaatttaaaaatttaataatgctaacaaaggagagt 616  Q
    ||||||||||||||| ||||                 ||||||||||||||       ||||||||||||||| |||||| |||||||||||||||||||    
T  1243050 ttatctatagataaaataacaacaaaaaaaaaaa---ttatacatcgtcatgtagcatacatataaatttaaatatttaacaatgctaacaaaggagagt 1243146  T
Q  617 taacatatacacatttttagtgatccactcataattaatcaaatttaaaactggtatatatacgatgttg 686  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  1243147 taacatatacacatttttagtgatcgactcataattaatcaaatttaaaactggtatatatatgatgttg 1243216  T

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Target: chr5; HSP #2
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 187 - 352
Target Start/End: Original strand, 1242710 - 1242879
Alignment:
Q  187 tagatgagacttgttgggaagtagtaaaatggggtagaagaa---aagctgaagccgtggtcgaaaagtatttttagaaaatggtgaaattaaaa-aatg 282  Q
    ||||||||||||||||||||||||||||||||||||||||||   |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  1242710 tagatgagacttgttgggaagtagtaaaatggggtagaagaacaaaagctgaagcggtggtcgaaaagtatttttagaaaatggtgaaattaaaaaaatg 1242809  T
Q  283 aatgagttgaaaagtctaagtacaattactaaaagaattttctattaaatacttttcatagtttctatcg 352  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1242810 aatgagttgaaaagtctaagtacaattaccaaaagaattttctattaaatacttttcatagtttctatcg 1242879  T

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Target: chr5; HSP #3
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 762 - 892
Target Start/End: Original strand, 1243282 - 1243412
Alignment:
Q  762 acacaaaatcgattatcttaggatatagctctatggtgcgaataaatcaatgtgacgcgattaggtaattttagctcttttatttcctcctcgtaatact 861  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1243282 acacaaaatcgattatcttaggatatagctctatggtgcgaataaatcaatgtgacgcgattaggtaattttagcttttttatttcctcctcgtaatact 1243381  T
Q  862 cgcccgataaccacaaacacacacaggttct 892  Q
    |||||||||||||||||||||||||| ||||    
T  1243382 cgcccgataaccacaaacacacacagcttct 1243412  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 480 - 535
Target Start/End: Original strand, 6689898 - 6689953
Alignment:
Q  480 atgacaaataacaaacttatcaaaatactaagtttgctttattattatctatagat 535  Q
    |||||| || ||||||||  |||||||||||||||||||||||||||||| |||||    
T  6689898 atgacagatgacaaacttgccaaaatactaagtttgctttattattatctgtagat 6689953  T

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Target: chr7 (Bit Score: 82; Significance: 3e-38; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 249 - 342
Target Start/End: Complemental strand, 41521282 - 41521189
Alignment:
Q  249 aagtatttttagaaaatggtgaaattaaaaaatgaatgagttgaaaagtctaagtacaattactaaaagaattttctattaaatacttttcata 342  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41521282 aagtatttttagaaaatggtgaaatcaaaagatgaatgagttgaaaagtctaagtacaattaccaaaagaattttctattaaatacttttcata 41521189  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 424 - 535
Target Start/End: Complemental strand, 41521114 - 41521003
Alignment:
Q  424 gtttccttataaagaaattatttacaaagagtatcaaggaaggttgttcctaaaagatgacaaataacaaacttatcaaaatactaagtttgctttatta 523  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||  |||||||  |||||||||||  || ||||||||    
T  41521114 gtttccttattaagaaataatttagaaagagtatcaaggaaggttgttcctagaagatgacaaatggcaaacttgccaaaatactaaacttcctttatta 41521015  T
Q  524 ttatctatagat 535  Q
    ||||||||||||    
T  41521014 ttatctatagat 41521003  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 481 - 535
Target Start/End: Original strand, 1824588 - 1824642
Alignment:
Q  481 tgacaaataacaaacttatcaaaatactaagtttgctttattattatctatagat 535  Q
    ||||||||  || |||| |||||||||| ||||||||||||||||||||||||||    
T  1824588 tgacaaatggcatacttgtcaaaatacttagtttgctttattattatctatagat 1824642  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 41521343 - 41521310
Alignment:
Q  183 aatttagatgagacttgttgggaagtagtaaaat 216  Q
    ||||||||||||||||||||||||||||||||||    
T  41521343 aatttagatgagacttgttgggaagtagtaaaat 41521310  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 538
Target Start/End: Original strand, 7964510 - 7964571
Alignment:
Q  477 aagatgacaaataacaaacttatcaaaatactaagtttgctttattattatctatagataaa 538  Q
    ||||||||||||  || ||||  || ||||||||| |||||||||||||||||||| |||||    
T  7964510 aagatgacaaatgtcatacttgccataatactaagcttgctttattattatctataaataaa 7964571  T

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Target: chr8 (Bit Score: 70; Significance: 4e-31; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 183 - 316
Target Start/End: Original strand, 473268 - 473410
Alignment:
Q  183 aatttagatgagacttgttgggaagtagtaaaatgg------ggtagaagaa---aagctgaagccgtggtcgaaaagtatttttagaaaatggtgaaat 273  Q
    ||||||||||||| |||||||||| ||||||||| |      ||||||||||   |||||||||| |  |||||||||||||||||||||||||||||||    
T  473268 aatttagatgagagttgttgggaattagtaaaatagttcaagggtagaagaacaaaagctgaagcggcagtcgaaaagtatttttagaaaatggtgaaat 473367  T
Q  274 taaaaaatgaatgagttgaaaagtctaagtacaattactaaaa 316  Q
     |||| |||||||||||||||||||||||||||||||| ||||    
T  473368 caaaagatgaatgagttgaaaagtctaagtacaattaccaaaa 473410  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 424 - 531
Target Start/End: Original strand, 473452 - 473559
Alignment:
Q  424 gtttccttataaagaaattatttacaaagagtatcaaggaaggttgttcctaaaagatgacaaataacaaacttatcaaaatactaagtttgctttatta 523  Q
    |||||||||| ||||||| ||||| ||||||||| |||||||||||||| ||||||||||||||| ||||||||  ||||| |||||  |||||||||||    
T  473452 gtttccttattaagaaataatttagaaagagtatgaaggaaggttgttcttaaaagatgacaaatgacaaacttgccaaaacactaaacttgctttatta 473551  T
Q  524 ttatctat 531  Q
    ||||||||    
T  473552 ttatctat 473559  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 477 - 535
Target Start/End: Original strand, 1838414 - 1838472
Alignment:
Q  477 aagatgacaaataacaaacttatcaaaatactaagtttgctttattattatctatagat 535  Q
    ||||||||||||  |||||||  ||||||||||||||||||||||||||||||||||||    
T  1838414 aagatgacaaatggcaaacttgccaaaatactaagtttgctttattattatctatagat 1838472  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 477 - 535
Target Start/End: Original strand, 30587335 - 30587393
Alignment:
Q  477 aagatgacaaataacaaacttatcaaaatactaagtttgctttattattatctatagat 535  Q
    ||||||||||||| |||||||  ||||||||| || |||||||||||||||||||||||    
T  30587335 aagatgacaaatatcaaacttgccaaaatacttagcttgctttattattatctatagat 30587393  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 474 - 535
Target Start/End: Original strand, 3607935 - 3607996
Alignment:
Q  474 taaaagatgacaaataacaaacttatcaaaatactaagtttgctttattattatctatagat 535  Q
    ||||||||||||||| ||||||||  ||||||| | |||||| |||||||||||||||||||    
T  3607935 taaaagatgacaaatgacaaacttgccaaaataatgagtttgttttattattatctatagat 3607996  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 474 - 535
Target Start/End: Original strand, 23920807 - 23920870
Alignment:
Q  474 taaaagatgacaaataacaaacttatcaaaatactaagtttgctttat--tattatctatagat 535  Q
    |||||||||||||||  |||||||  ||||||||||||||||||||||  ||||||||||||||    
T  23920807 taaaagatgacaaatggcaaacttgccaaaatactaagtttgctttattatattatctatagat 23920870  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 424 - 524
Target Start/End: Original strand, 22206441 - 22206541
Alignment:
Q  424 gtttccttataaagaaattatttacaaagagtatcaaggaaggttgttcctaaaagatgacaaataacaaacttatcaaaatactaagtttgctttatta 523  Q
    |||||||||| ||| ||| ||||| ||||||| |||||||||| || || || ||||||||||||  | |||||  ||||  ||||| ||||||||||||    
T  22206441 gtttccttattaagcaataatttagaaagagtgtcaaggaaggatgctcttagaagatgacaaatgtctaacttgccaaagaactaactttgctttatta 22206540  T
Q  524 t 524  Q
    |    
T  22206541 t 22206541  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 481 - 535
Target Start/End: Complemental strand, 6632798 - 6632744
Alignment:
Q  481 tgacaaataacaaacttatcaaaatactaagtttgctttattattatctatagat 535  Q
    |||||||| |||  ||| |||||||||| || |||||||||||||||||||||||    
T  6632798 tgacaaatgacaggcttgtcaaaatactgagcttgctttattattatctatagat 6632744  T

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