View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7782_low_13 (Length: 338)
Name: NF7782_low_13
Description: NF7782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7782_low_13 |
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| [»] scaffold0198 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 174 - 317
Target Start/End: Complemental strand, 46877883 - 46877740
Alignment:
| Q |
174 |
tttgttttgttatcattttaagtggagcttttgacgtcaaagtattctttttcgtgcatgaattaaacgcataataactccaaatctatgtatatgtaca |
273 |
Q |
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| T |
46877883 |
tttgttttgttatcattttaagtggagcttttgacgtcaaagtattctttttcgtgcatgaattaaacgcataataactccaaatctatgtatatgtaca |
46877784 |
T |
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| Q |
274 |
taatttggctaacactacagggatctcgctgaaaagggccacag |
317 |
Q |
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| T |
46877783 |
taatttggctaacactacagggatctcgctgaaaagggccacag |
46877740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 39491247 - 39491082
Alignment:
| Q |
1 |
aggttgttgcaggatggacaaaataaaagtgaatatatgatagaaagttaccttttgaatatgcactgatttattttcattttaatggtatttgaatggt |
100 |
Q |
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| T |
39491247 |
aggttgttgcaggagggacaaaataaaagtgaatatgtgatagaaggttaccttttgaatatgcagtgattgattttcattttaatgatatttgagtggt |
39491148 |
T |
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| Q |
101 |
taaaaactatagaatatatgtgattcgtgatttattcttgaagtatttaatcgtggtatatagcaa |
166 |
Q |
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| T |
39491147 |
taaaaactatggaatatatgtgattcgtgatttattcttgaagtatttaatcgtggtatatagcaa |
39491082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 14959342 - 14959177
Alignment:
| Q |
1 |
aggttgttgcaggatggacaaaataaaagtgaatatatgatagaaagttaccttttgaatatgcactgatttattttcattttaatggtatttgaatggt |
100 |
Q |
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| T |
14959342 |
aggttgttgcaggagggacaaaataaaaatgaatatgtgatagaaggttaccttttgaatatgcagtaattgattttcattttaatggtatttgagtggt |
14959243 |
T |
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| Q |
101 |
taaaaactatagaatatatgtgattcgtgatttattcttgaagtatttaatcgtggtatatagcaa |
166 |
Q |
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| T |
14959242 |
taaaaactatggaatatatgtgattcgtgatttattcttgaagtatttaatcgtggtatatagcaa |
14959177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 2224211 - 2224044
Alignment:
| Q |
1 |
aggttgttgcaggatggacaaaataaaagtgaatatatgatagaaagttaccttttgaatatgcactgatttattttcattttaatggtatttgaatggt |
100 |
Q |
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||||||||||| || ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2224211 |
aggttgttgcacgagggacaaaataaaagtgaatatgtgatagaaggttaccttttgaatatgcactgattgattttcattttaatggtatttgaatggt |
2224112 |
T |
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| Q |
101 |
taaaaactatagaatatatgtgattcgtgatttattcttgaagtatttaatcgtggtatatagcaatg |
168 |
Q |
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| T |
2224111 |
caaaaactatgaaatatatgtgattcgtgatttattcttgaaatatttaatcgtggtatatagcaatg |
2224044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 27585430 - 27585595
Alignment:
| Q |
1 |
aggttgttgcaggatggacaaaataaaagtgaatatatgatagaaagttaccttttgaatatgcactgatttattttcattttaatggtatttgaatggt |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||| | ||| ||||||||||||||| ||||||| |||| |
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| T |
27585430 |
aggttgttgcaggagggacaaaataaaagtgaatatgtgatagaaggttaccttttgaatatgcagtaattgattttcattttaatgatatttgagtggt |
27585529 |
T |
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| Q |
101 |
taaaaactatagaatatatgtgattcgtgatttattcttgaagtatttaatcgtggtatatagcaa |
166 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27585530 |
taaaaactatggaatatatgtgattcgtgatttattcttgaagtatttaattgtggtatatagcaa |
27585595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0198 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: scaffold0198
Description:
Target: scaffold0198; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 18585 - 18420
Alignment:
| Q |
1 |
aggttgttgcaggatggacaaaataaaagtgaatatatgatagaaagttaccttttgaatatgcactgatttattttcattttaatggtatttgaatggt |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||| |||| ||| ||||||||||||||||||| | ||| ||||||||||||||||||||||| |||| |
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| T |
18585 |
aggttgttgcaggagggacaaaataaaagtgaatatgtgatggaaggttaccttttgaatatgcagtaattgattttcattttaatggtatttgagtggt |
18486 |
T |
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| Q |
101 |
taaaaactatagaatatatgtgattcgtgatttattcttgaagtatttaatcgtggtatatagcaa |
166 |
Q |
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| T |
18485 |
taaaaactatgaaatatatgtgattcgtgatttattcttgaagtatttaatcgtggtatatagcaa |
18420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 7 - 171
Target Start/End: Complemental strand, 35181922 - 35181759
Alignment:
| Q |
7 |
ttgcaggatggacaaaataaaagtgaatatatgatagaaagttaccttttgaatatgcactgatttattttcattttaatggtatttgaatggttaaaaa |
106 |
Q |
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||||| || ||||||||||||||||||||| |||||||| ||||| | |||||||| || ||||| |||||||||||||||||||||||||||||||||| |
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| T |
35181922 |
ttgcatgagggacaaaataaaagtgaatatgtgatagaaggttac-tattgaatatacaatgattgattttcattttaatggtatttgaatggttaaaaa |
35181824 |
T |
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| Q |
107 |
ctatagaatatatgtgattcgtgatttattcttgaagtatttaatcgtggtatatagcaatgttg |
171 |
Q |
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||| |||||||| ||||||||||||||||| |||| |||||||||| ||||||||| ||||| |
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| T |
35181823 |
ctaggagatatatgtaattcgtgatttattcttaaagtttttaatcgtgatatatagcagtgttg |
35181759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 1249580 - 1249511
Alignment:
| Q |
96 |
atggttaaaaactatagaatatatgtgattcgtgatttattcttgaagtatttaatcgtggtatatagca |
165 |
Q |
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|||||||| |||||| ||||||||||||||| |||||||||| | ||||||||||||||| ||||||||| |
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| T |
1249580 |
atggttaacaactatggaatatatgtgattcatgatttattcgtaaagtatttaatcgtgatatatagca |
1249511 |
T |
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