View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7782_low_15 (Length: 314)

Name: NF7782_low_15
Description: NF7782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7782_low_15
NF7782_low_15
[»] chr6 (1 HSPs)
chr6 (1-314)||(8137839-8138152)


Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 8138152 - 8137839
Alignment:
Q  1 ccttttcgtagggatgtcaattggactcaggcatatcgggcacctgcataaaaattatccaatgagtagtgtaataattcacaccacgagtacaggcatg 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8138152 ccttttcgtagggatgtcacttggactcaggcatatcgggcacctgcataaaaattatccaatgagtagtgtaataattcacaccacgagtacaggcatg 8138053  T
Q  101 ggcatgaataattatacacaaaattgaacggatatgtgtgggtacgagcattcttgtttccaccacatccagaaataatatattttttggtaactgccct 200  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  8138052 ggcatgaataattatacgcaaaattgaacggatatgtgtgggtacgagcattcttgtttccaccccatccagaaataatatattttttagtaactgccct 8137953  T
Q  201 ataagtcaagttcggtgcgcgcatcatatatcaccaaatgcttcttgttatatacatggtgcttaatcggaaaccattttacatttcacaactaatatta 300  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8137952 ataagtcaagttcggtgcgcacatcatatatcaccaaatgcttcttgttatatacatggtgcttaatcggaaaccattttacatttcacaactaatatta 8137853  T
Q  301 atgttgatctttgt 314  Q
    ||||||||||||||    
T  8137852 atgttgatctttgt 8137839  T

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