View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7782_low_16 (Length: 312)

Name: NF7782_low_16
Description: NF7782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7782_low_16
NF7782_low_16
[»] chr1 (4 HSPs)
chr1 (1-295)||(11892842-11893136)
chr1 (3-58)||(15784228-15784283)
chr1 (3-58)||(18556810-18556865)
chr1 (15-47)||(17830048-17830080)
[»] chr6 (3 HSPs)
chr6 (1-53)||(6910003-6910055)
chr6 (3-58)||(10401140-10401195)
chr6 (3-47)||(6538411-6538455)
[»] chr4 (1 HSPs)
chr4 (3-58)||(23277306-23277361)
[»] chr8 (2 HSPs)
chr8 (3-44)||(31916522-31916563)
chr8 (3-58)||(40859840-40859895)
[»] chr3 (3 HSPs)
chr3 (3-58)||(12704128-12704183)
chr3 (3-47)||(30574034-30574078)
chr3 (3-47)||(35959588-35959632)
[»] chr7 (1 HSPs)
chr7 (3-47)||(33552943-33552987)
[»] chr2 (2 HSPs)
chr2 (11-55)||(31561893-31561937)
chr2 (11-47)||(43570320-43570356)


Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 11893136 - 11892842
Alignment:
Q  1 gtttatacaaaagcgcttatcatgataagtgcttgtgacataagctgtttatccaaacgcaccatagtatttaaatatatgatacaataggaagaaaacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11893136 gtttatacaaaagcgcttatcatgataagtgcttgtgacataagctgtttatccaaacgcaccatagtatttaaatatatgatacaataggaagaaaacc 11893037  T
Q  101 agtgtagtatcctcaactgagccaaaatttatggaataatacacatgaacaatggtgaaacttatattgatgatgcttacatgtgtatagctcaaggttt 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11893036 agtgtagtaacctcaactgagccaaaatttatggaataatacacatgaacaatggtgaaacttatattgatgatgcttacatgtgtatagctcaaggttt 11892937  T
Q  201 gacttttaaaatataatannnnnnngagtcacctgtattgttggtcgacaacataagtttctcatatattataattgattaatataggaacttaa 295  Q
    ||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11892936 gacttttaaaatataatatttttttgagtcacctgtattgttggtcgacaacataagtttctcatatattataattgattaatataggaacttaa 11892842  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 15784283 - 15784228
Alignment:
Q  3 ttatacaaaagcgcttatcatgataagtgcttgtgacataagctgtttatccaaac 58  Q
    ||||||| ||||||||||||| |||||||||||||| |||| ||||||||||||||    
T  15784283 ttatacataagcgcttatcataataagtgcttgtgatataaactgtttatccaaac 15784228  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 18556865 - 18556810
Alignment:
Q  3 ttatacaaaagcgcttatcatgataagtgcttgtgacataagctgtttatccaaac 58  Q
    ||||||| |||||||  ||| ||||||||||||||  |||||||||||||||||||    
T  18556865 ttatacacaagcgctcgtcacgataagtgcttgtgctataagctgtttatccaaac 18556810  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 17830080 - 17830048
Alignment:
Q  15 gcttatcatgataagtgcttgtgacataagctg 47  Q
    |||||||||||||||||||||||| ||||||||    
T  17830080 gcttatcatgataagtgcttgtgatataagctg 17830048  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 6910003 - 6910055
Alignment:
Q  1 gtttatacaaaagcgcttatcatgataagtgcttgtgacataagctgtttatc 53  Q
    ||||||||| |||| ||||||||||||||||||||||| |||| |||||||||    
T  6910003 gtttatacataagcacttatcatgataagtgcttgtgatataaactgtttatc 6910055  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 10401140 - 10401195
Alignment:
Q  3 ttatacaaaagcgcttatcatgataagtgcttgtgacataagctgtttatccaaac 58  Q
    ||||||| |||||||||||||||||||||||||||  ||||| |||||| ||||||    
T  10401140 ttatacataagcgcttatcatgataagtgcttgtgcaataagttgtttaaccaaac 10401195  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 6538455 - 6538411
Alignment:
Q  3 ttatacaaaagcgcttatcatgataagtgcttgtgacataagctg 47  Q
    ||||||| ||||||||||||| |||||||||||||  ||||||||    
T  6538455 ttatacataagcgcttatcattataagtgcttgtgctataagctg 6538411  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 23277361 - 23277306
Alignment:
Q  3 ttatacaaaagcgcttatcatgataagtgcttgtgacataagctgtttatccaaac 58  Q
    ||||||| |||| |||||||| |||||||||||||  |||||||||||||||||||    
T  23277361 ttatacataagctcttatcattataagtgcttgtgctataagctgtttatccaaac 23277306  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 31916563 - 31916522
Alignment:
Q  3 ttatacaaaagcgcttatcatgataagtgcttgtgacataag 44  Q
    ||||||| |||||||||||||||||||||||| |||||||||    
T  31916563 ttatacataagcgcttatcatgataagtgcttatgacataag 31916522  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 40859840 - 40859895
Alignment:
Q  3 ttatacaaaagcgcttatcatgataagtgcttgtgacataagctgtttatccaaac 58  Q
    ||||||| |||||||||||||||||||  ||||||  |||||||| ||||||||||    
T  40859840 ttatacataagcgcttatcatgataagcacttgtgctataagctgcttatccaaac 40859895  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 12704128 - 12704183
Alignment:
Q  3 ttatacaaaagcgcttatcatgataagtgcttgtgacataagctgtttatccaaac 58  Q
    ||||||| ||| | |||||||||||||||||||||  ||||||||| |||||||||    
T  12704128 ttatacacaagtgtttatcatgataagtgcttgtgttataagctgtatatccaaac 12704183  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 30574034 - 30574078
Alignment:
Q  3 ttatacaaaagcgcttatcatgataagtgcttgtgacataagctg 47  Q
    ||||||| |||||||||||||||||| ||||| ||| ||||||||    
T  30574034 ttatacataagcgcttatcatgataaatgcttatgatataagctg 30574078  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 35959588 - 35959632
Alignment:
Q  3 ttatacaaaagcgcttatcatgataagtgcttgtgacataagctg 47  Q
    ||||||| |||| |||||||||||||| |||||||| ||||||||    
T  35959588 ttatacataagctcttatcatgataagagcttgtgatataagctg 35959632  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 33552943 - 33552987
Alignment:
Q  3 ttatacaaaagcgcttatcatgataagtgcttgtgacataagctg 47  Q
    ||||||| |||||||||||||| ||||||||||||  ||||||||    
T  33552943 ttatacataagcgcttatcatggtaagtgcttgtgcaataagctg 33552987  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 31561893 - 31561937
Alignment:
Q  11 aagcgcttatcatgataagtgcttgtgacataagctgtttatcca 55  Q
    ||||||||||||||||||  |||||||  ||||||||||||||||    
T  31561893 aagcgcttatcatgataaacgcttgtgctataagctgtttatcca 31561937  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 43570356 - 43570320
Alignment:
Q  11 aagcgcttatcatgataagtgcttgtgacataagctg 47  Q
    |||||||||||||||||||||||||||  ||||||||    
T  43570356 aagcgcttatcatgataagtgcttgtgctataagctg 43570320  T

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