View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7782_low_19 (Length: 220)

Name: NF7782_low_19
Description: NF7782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7782_low_19
NF7782_low_19
[»] chr2 (3 HSPs)
chr2 (8-70)||(25886027-25886089)
chr2 (12-70)||(20379496-20379554)
chr2 (8-70)||(28918393-28918455)
[»] chr3 (5 HSPs)
chr3 (8-70)||(12771028-12771090)
chr3 (8-73)||(13938671-13938736)
chr3 (8-70)||(34276271-34276333)
chr3 (9-73)||(8145454-8145518)
chr3 (8-70)||(19167186-19167248)
[»] chr6 (2 HSPs)
chr6 (136-220)||(2386247-2386331)
chr6 (9-59)||(26821070-26821120)
[»] chr7 (4 HSPs)
chr7 (8-67)||(39270106-39270165)
chr7 (12-55)||(13755763-13755806)
chr7 (15-54)||(20577701-20577740)
chr7 (12-71)||(13287540-13287600)
[»] chr8 (5 HSPs)
chr8 (8-70)||(25180551-25180613)
chr8 (19-70)||(15176264-15176315)
chr8 (8-70)||(17511108-17511170)
chr8 (8-70)||(24722188-24722250)
chr8 (12-54)||(18446705-18446747)
[»] chr5 (2 HSPs)
chr5 (12-68)||(19053309-19053365)
chr5 (12-53)||(25408005-25408046)
[»] chr1 (3 HSPs)
chr1 (8-70)||(21979523-21979585)
chr1 (8-70)||(21981741-21981803)
chr1 (12-70)||(18827604-18827662)
[»] chr4 (1 HSPs)
chr4 (16-68)||(20828026-20828078)


Alignment Details
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 25886089 - 25886027
Alignment:
Q  8 ggacatcattcatcatatttacagcagagcagcaactaacttaccacattaccttcaagcggg 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25886089 ggacatcattcatcatatttacagcagagcagcaactaacttaccacattaccttcaagcggg 25886027  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 20379496 - 20379554
Alignment:
Q  12 atcattcatcatatttacagcagagcagcaactaacttaccacattaccttcaagcggg 70  Q
    ||||||||||| ||||| |||||||||| ||||||||||||||  ||| ||||||||||    
T  20379496 atcattcatcacatttatagcagagcagtaactaacttaccactatacattcaagcggg 20379554  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 28918393 - 28918455
Alignment:
Q  8 ggacatcattcatcatatttacagcagagcagcaactaacttaccacattaccttcaagcggg 70  Q
    ||||||||||||||| ||||| |||| | || |||||||||||||||  ||| ||||||||||    
T  28918393 ggacatcattcatcacatttatagcataacaacaactaacttaccacgatacattcaagcggg 28918455  T

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Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 12771090 - 12771028
Alignment:
Q  8 ggacatcattcatcatatttacagcagagcagcaactaacttaccacattaccttcaagcggg 70  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||| |||| ||||||||||    
T  12771090 ggacatcattcatcacatttatagcagagcagcaactaacttaccacgttacattcaagcggg 12771028  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 13938736 - 13938671
Alignment:
Q  8 ggacatcattcatcatatttacagcagagcagcaactaacttaccacattaccttcaagcgggccc 73  Q
    |||||||||||||| |||||| |||| |||| |||||||||||||||| ||| |||||||||||||    
T  13938736 ggacatcattcatcgtatttatagcaaagcaacaactaacttaccacagtacattcaagcgggccc 13938671  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 34276333 - 34276271
Alignment:
Q  8 ggacatcattcatcatatttacagcagagcagcaactaacttaccacattaccttcaagcggg 70  Q
    ||||||||||||||  |||||||| |||||| |||||||||||||||| ||| ||||||||||    
T  34276333 ggacatcattcatcgcatttacagtagagcaacaactaacttaccacagtacattcaagcggg 34276271  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 8145454 - 8145518
Alignment:
Q  9 gacatcattcatcatatttacagcagagcagcaactaacttaccacattaccttcaagcgggccc 73  Q
    |||||||||||||  ||||| ||||||| | |||||||||||||||| ||| |||||||||||||    
T  8145454 gacatcattcatcgcatttatagcagaggaacaactaacttaccacaatacattcaagcgggccc 8145518  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 19167248 - 19167186
Alignment:
Q  8 ggacatcattcatcatatttacagcagagcagcaactaacttaccacattaccttcaagcggg 70  Q
    |||||||||||||| |||||| ||||||||||||||||||||  |||| ||| || |||||||    
T  19167248 ggacatcattcatcgtatttatagcagagcagcaactaactttacacaatacattgaagcggg 19167186  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 220
Target Start/End: Original strand, 2386247 - 2386331
Alignment:
Q  136 agcacaaacaacaaaataccaacactgaaagtaaagagcttttatgttgctatttgtatttactgtgttactacaaggaagttct 220  Q
    |||||||||| |||||||||| || |||||| |||| |||||| |||||||| ||||||   |||||||||||||||| ||||||    
T  2386247 agcacaaacaccaaaataccaccattgaaagaaaagtgcttttttgttgctacttgtatcatctgtgttactacaaggtagttct 2386331  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 26821070 - 26821120
Alignment:
Q  9 gacatcattcatcatatttacagcagagcagcaactaacttaccacattac 59  Q
    |||||| ||||||| ||||| ||||||| ||||||||||||||||| ||||    
T  26821070 gacatctttcatcagatttatagcagagtagcaactaacttaccacgttac 26821120  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 39270165 - 39270106
Alignment:
Q  8 ggacatcattcatcatatttacagcagagcagcaactaacttaccacattaccttcaagc 67  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||| ||| |||||||    
T  39270165 ggacatcaatcatcacatttatagcagagcagcaactaacttaccacagtacattcaagc 39270106  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 13755806 - 13755763
Alignment:
Q  12 atcattcatcatatttacagcagagcagcaactaacttaccaca 55  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||    
T  13755806 atcattcatcatatttatagcagagcaacaactaacttaccaca 13755763  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 20577701 - 20577740
Alignment:
Q  15 attcatcatatttacagcagagcagcaactaacttaccac 54  Q
    |||||||||||||| ||||||||| |||||||||||||||    
T  20577701 attcatcatatttatagcagagcaacaactaacttaccac 20577740  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 13287600 - 13287540
Alignment:
Q  12 atcattcatcatatttacagcagagcagcaact-aacttaccacattaccttcaagcgggc 71  Q
    ||||||||||| ||||| ||||||||||||||| ||||||||||  ||| |||||| ||||    
T  13287600 atcattcatcacatttatagcagagcagcaactaaacttaccactatacattcaagagggc 13287540  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 25180613 - 25180551
Alignment:
Q  8 ggacatcattcatcatatttacagcagagcagcaactaacttaccacattaccttcaagcggg 70  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||| |||||||  ||||||||||    
T  25180613 ggacatcattcatcacatttatagcagagcagcaagtaacttaacacattaaattcaagcggg 25180551  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 15176315 - 15176264
Alignment:
Q  19 atcatatttacagcagagcagcaactaacttaccacattaccttcaagcggg 70  Q
    |||||||||| ||||||||| |||||||||||||||| ||| ||||||||||    
T  15176315 atcatatttatagcagagcaacaactaacttaccacaatacattcaagcggg 15176264  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 17511108 - 17511170
Alignment:
Q  8 ggacatcattcatcatatttacagcagagcagcaactaacttaccacattaccttcaagcggg 70  Q
    ||||||||| ||||  ||||| ||||||||||||||||| |||||||| ||| ||||||||||    
T  17511108 ggacatcatccatcgcatttatagcagagcagcaactaagttaccacagtacattcaagcggg 17511170  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 24722250 - 24722188
Alignment:
Q  8 ggacatcattcatcatatttacagcagagcagcaactaacttaccacattaccttcaagcggg 70  Q
    ||||||||| ||||| ||||| |||||||||| |||||||||||| || ||| ||||||||||    
T  24722250 ggacatcatccatcacatttatagcagagcagaaactaacttacctcagtacattcaagcggg 24722188  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 18446747 - 18446705
Alignment:
Q  12 atcattcatcatatttacagcagagcagcaactaacttaccac 54  Q
    ||||||||||| ||||| ||| |||||||||||||||||||||    
T  18446747 atcattcatcacatttatagcggagcagcaactaacttaccac 18446705  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 19053309 - 19053365
Alignment:
Q  12 atcattcatcatatttacagcagagcagcaactaacttaccacattaccttcaagcg 68  Q
    ||||||||||| ||||| ||||||||| |||||||||||||||| ||| ||||||||    
T  19053309 atcattcatcacatttatagcagagcaacaactaacttaccacagtacattcaagcg 19053365  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 25408046 - 25408005
Alignment:
Q  12 atcattcatcatatttacagcagagcagcaactaacttacca 53  Q
    ||||||||||||||| | ||||||||||||||||||||||||    
T  25408046 atcattcatcatattaatagcagagcagcaactaacttacca 25408005  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 21979523 - 21979585
Alignment:
Q  8 ggacatcattcatcatatttacagcagagcagcaactaacttaccacattaccttcaagcggg 70  Q
    ||||||| ||||||| || |||| ||||||||||||||||||||| | |||| ||||||||||    
T  21979523 ggacatctttcatcacatctacaacagagcagcaactaacttacctcgttacgttcaagcggg 21979585  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 21981741 - 21981803
Alignment:
Q  8 ggacatcattcatcatatttacagcagagcagcaactaacttaccacattaccttcaagcggg 70  Q
    ||||||| ||||||| || |||| ||||||||||||||||||||| | |||| ||||||||||    
T  21981741 ggacatctttcatcacatctacaacagagcagcaactaacttacctcgttacgttcaagcggg 21981803  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 18827604 - 18827662
Alignment:
Q  12 atcattcatcatatttacagcagagcagcaactaacttaccacattaccttcaagcggg 70  Q
    ||||||||||| | ||| ||||||||||||||| |||||||||  ||| ||||||||||    
T  18827604 atcattcatcacagttatagcagagcagcaactgacttaccactatacattcaagcggg 18827662  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 20828078 - 20828026
Alignment:
Q  16 ttcatcatatttacagcagagcagcaactaacttaccacattaccttcaagcg 68  Q
    ||||||| || ||||||||||||||||||||||||| ||| ||| ||||||||    
T  20828078 ttcatcacatctacagcagagcagcaactaacttacaacaatacattcaagcg 20828026  T

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