View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7782_low_2 (Length: 851)
Name: NF7782_low_2
Description: NF7782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7782_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 555; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 1 - 679
Target Start/End: Complemental strand, 31407819 - 31407140
Alignment:
| Q |
1 |
tcacggattaacttattcaatgagttcctagggatgaacaatatttcttgtgga------gaaacgagcaaatgaactgtttgaatcacaatataatgaa |
94 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||| |
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| T |
31407819 |
tcacggattaacttattcaatgagttcctagggatgaacaatatttcttgtggacttatagaaacgagcaaatgaactgtt-----cacaatatgatgaa |
31407725 |
T |
|
| Q |
95 |
attgaaaccaagattatgtgaaagtgatatttgattttgtcaattgatgtgtgtcatgcaggttgtgcgtaagccagcacatcatttcttggacgagctt |
194 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31407724 |
attgaaaccaagattatgtgaaagtgatatttgattgtgtgaattgatgtgtgtcatgcaggttgtgcgtaagccagcacatcatttcttggacgagctt |
31407625 |
T |
|
| Q |
195 |
gaaattgagtatgacgaacaggacgactatgtagtgatcaagcacgctgctctcttcacttccacaatcatgagcaagctactagcaaggccaaacgtga |
294 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31407624 |
gaaattgagtatgatgaacaggacgactatgtagtgatcaagcatgctgctctcttcacttccaccatcatgagcaagctactagcaaggccaaacgtga |
31407525 |
T |
|
| Q |
295 |
agcttttcaatgctgtagctgctgaggatttgattgtgaagaatggaagagttggcggtgttgtcactaattgggctttggtttcaatgaaccatgacac |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31407524 |
agcttttcaatgctgtagctgctgaggatttgattgtgaagaatgaaagagttggtggtgttgtcactaactgggctttggtttcaatgaaccatgacac |
31407425 |
T |
|
| Q |
395 |
tcaatcttgcatggacccaaatgttatggagtctaaagtggtggtgagttcttgtggccatgatggtccttttggagccactggtgtgaagaggctcaag |
494 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31407424 |
tcaatcctgcatggacccaaatgttatggagtctaaagttgtggttagctcttgtggccatgatggtccttttggagccactggtgtgaagaggctcaag |
31407325 |
T |
|
| Q |
495 |
agtattggtttgattgatactgtgcccggaatgaaggccctcgacatgaacactgccgaggatgctattgttaggctcactagggaggttgttcctggaa |
594 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31407324 |
agtattggtttgattgataccgtgcctggaatgaaggccctcgacatgaacactgccgaggatgctattgttaggctcactagggaggttgttcctggaa |
31407225 |
T |
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| Q |
595 |
tgatagtaactggcatggaggttgctgagattgatggtgctccaagaatggtaaaaaatttcacc-ttttcatattcaaatagttt |
679 |
Q |
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| T |
31407224 |
tgatagtaactggcatggaggttgctgagattgatggtgctccaagaatggt-aaatttttcacctttttcattttcaaatagttt |
31407140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 677 - 757
Target Start/End: Complemental strand, 31407099 - 31407017
Alignment:
| Q |
677 |
tttacaacactcaca--cattgcacaccaatcatttgcgctagactttggtcgtttaattttcaaatagtaaaataccactaa |
757 |
Q |
| |
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| T |
31407099 |
tttacaacactcacatacattgcgcactaatcatttgcgctagactttgatcgtttaattttcaaatagttaaataccactaa |
31407017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 788 - 843
Target Start/End: Complemental strand, 31407019 - 31406964
Alignment:
| Q |
788 |
taagagacatttttatatggctagtgtcatactgatatgatgggtctaacaccaaa |
843 |
Q |
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| T |
31407019 |
taagagacattttgatatggctagtgtcatactgatatgatgggtccaaccccaaa |
31406964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 9e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 199 - 648
Target Start/End: Complemental strand, 47481722 - 47481273
Alignment:
| Q |
199 |
ttgagtatgacgaacaggacgactatgtagtgatcaagcacgctgctctcttcacttccacaatcatgagcaagctactagcaaggccaaacgtgaagct |
298 |
Q |
| |
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|||| ||||||||||| || ||||| || || ||||| ||||||||||| |||||||| || |||||||||||||| || |||| || || || || || |
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| T |
47481722 |
ttgaatatgacgaacaagaagactacgttgtcatcaaacacgctgctctattcacttcaaccatcatgagcaagcttcttgcaaaacctaatgtaaaact |
47481623 |
T |
|
| Q |
299 |
tttcaatgctgtagctgctgaggatttgattgtgaagaatggaagagttggcggtgttgtcactaattgggctttggtttcaatgaaccatgacactcaa |
398 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||| | ||||||| |||||||| || || |||||||||||||| ||||||||||| || ||| |
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| T |
47481622 |
tttcaatgctgttgctgctgaggatttgattgtgaaggaaaacagagttgctggtgttgttacaaactgggctttggtttcgatgaaccatgatacacaa |
47481523 |
T |
|
| Q |
399 |
tcttgcatggacccaaatgttatggagtctaaagtggtggtgagttcttgtggccatgatggtccttttggagccactggtgtgaagaggctcaagagta |
498 |
Q |
| |
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||||||||||| || ||||||||||| |||| || || |||||||||||||| ||||||||||||||||| || |||||||| |||||| | ||||||| |
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| T |
47481522 |
tcttgcatggatcctaatgttatggaagctaaggttgttgtgagttcttgtggacatgatggtccttttggtgctactggtgttaagaggttgaagagta |
47481423 |
T |
|
| Q |
499 |
ttggtttgattgatactgtgcccggaatgaaggccctcgacatgaacactgccgaggatgctattgttaggctcactagggaggttgttcctggaatgat |
598 |
Q |
| |
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|||| |||||||| ||| || |||||||| || || || ||||| ||||| || |||||||||||| | || || ||||| ||||||||||| ||||| |
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| T |
47481422 |
ttggcatgattgatcatgttcctggaatgaaagcacttgatatgaatactgctgaagatgctattgttcgtcttacaagggaagttgttcctggtatgat |
47481323 |
T |
|
| Q |
599 |
agtaactggcatggaggttgctgagattgatggtgctccaagaatggtaa |
648 |
Q |
| |
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|| ||||| ||||| |||||||| ||||||||||| ||||||||||||| |
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| T |
47481322 |
tgttactggtatggaagttgctgaaattgatggtgccccaagaatggtaa |
47481273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 4220543 - 4220584
Alignment:
| Q |
231 |
atcaagcacgctgctctcttcacttccacaatcatgagcaag |
272 |
Q |
| |
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| T |
4220543 |
atcaagcacgctgctctcttaacttccacaatcatgagcaag |
4220584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 4220463 - 4220500
Alignment:
| Q |
8 |
ttaacttattcaatgagttcctagggatgaacaatatt |
45 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||| |
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|
| T |
4220463 |
ttaacttattcaatgagttcatagggatgaacaatatt |
4220500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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