View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7782_low_20 (Length: 216)
Name: NF7782_low_20
Description: NF7782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7782_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 24 - 191
Target Start/End: Complemental strand, 17648731 - 17648562
Alignment:
| Q |
24 |
tgatctgtggaacacctttaggagcaggagggatgccggaaagttgaaattttcccaacaaattgttatctttaattcttgttccctctccttcaaagac |
123 |
Q |
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| T |
17648731 |
tgatctgtggaacacctctaggagcaggagggatgccggaaagttgaaattttcccaacaaattgttatctttaattcttgttccctctccttcaaagac |
17648632 |
T |
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| Q |
124 |
ttagaacagtcatcacaccaccaaca--ctccgaaccaaaattctaaaccttctaattgtactcaccatt |
191 |
Q |
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| T |
17648631 |
ttagaacagtcatcacaccaccaacagtctcgaaaccaagatcatgaaccttctaattgtactcaccatt |
17648562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 17706478 - 17706377
Alignment:
| Q |
24 |
tgatctgtggaacacctttaggagcaggagggatgccggaaagttgaaattttcccaacaaattgttatctttaattcttgttccctctccttcaaagac |
123 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17706478 |
tgatctgtggaacaccccaaggagcaggagggatgccggaaagttgaaattttcccaacaaattgttatctttaattcttgttccctctccttcaaagac |
17706379 |
T |
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| Q |
124 |
tt |
125 |
Q |
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|| |
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| T |
17706378 |
tt |
17706377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 39985009 - 39985112
Alignment:
| Q |
22 |
agtgatctgtggaacacctttaggagcaggagggatgccggaaagttgaaattttcccaacaaattgttatctttaattcttgttccctctccttcaaag |
121 |
Q |
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|||||| || ||||||||| | || |||||||| ||||||||||||| ||| || |||||||||||||| ||| | ||||||| | |||||||||||| |
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| T |
39985009 |
agtgatttggggaacacctctgggggcaggaggaatgccggaaagttcaaacttgcccaacaaattgttgtctcttgttcttgtcctctctccttcaaaa |
39985108 |
T |
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| Q |
122 |
actt |
125 |
Q |
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|||| |
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| T |
39985109 |
actt |
39985112 |
T |
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