View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7782_low_4 (Length: 630)

Name: NF7782_low_4
Description: NF7782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7782_low_4
NF7782_low_4
[»] chr6 (6 HSPs)
chr6 (14-583)||(2386226-2386795)
chr6 (188-236)||(24333044-24333092)
chr6 (194-235)||(3525236-3525277)
chr6 (192-233)||(4308887-4308928)
chr6 (196-233)||(31776191-31776228)
chr6 (202-234)||(30536883-30536915)
[»] chr2 (7 HSPs)
chr2 (192-234)||(37276854-37276896)
chr2 (192-233)||(37419586-37419627)
chr2 (192-234)||(1830149-1830191)
chr2 (188-234)||(15370241-15370287)
chr2 (195-232)||(40059381-40059418)
chr2 (195-232)||(40085281-40085318)
chr2 (195-231)||(43985322-43985358)
[»] chr4 (11 HSPs)
chr4 (202-235)||(28615454-28615487)
chr4 (192-235)||(679401-679444)
chr4 (188-235)||(41433481-41433528)
chr4 (190-233)||(53034718-53034761)
chr4 (192-234)||(22662169-22662211)
chr4 (192-234)||(22666648-22666690)
chr4 (194-235)||(27043747-27043788)
chr4 (200-233)||(52428782-52428815)
chr4 (203-235)||(7367971-7368003)
chr4 (194-234)||(25571371-25571411)
chr4 (185-233)||(54575522-54575570)
[»] chr3 (5 HSPs)
chr3 (194-235)||(25447162-25447203)
chr3 (194-235)||(36507009-36507050)
chr3 (193-235)||(47903997-47904039)
chr3 (194-231)||(26911703-26911740)
chr3 (194-230)||(33405114-33405150)
[»] chr8 (3 HSPs)
chr8 (188-231)||(39551130-39551173)
chr8 (202-235)||(10727464-10727497)
chr8 (194-234)||(38602439-38602479)
[»] chr7 (5 HSPs)
chr7 (188-235)||(28691753-28691800)
chr7 (188-235)||(41040271-41040318)
chr7 (194-231)||(9210933-9210970)
chr7 (194-235)||(37064385-37064426)
chr7 (194-234)||(44822070-44822110)
[»] chr5 (6 HSPs)
chr5 (184-231)||(18286893-18286940)
chr5 (192-234)||(3280654-3280696)
chr5 (194-235)||(32197845-32197886)
chr5 (203-235)||(10638452-10638484)
chr5 (202-234)||(32010065-32010097)
chr5 (202-234)||(40335791-40335823)
[»] chr1 (4 HSPs)
chr1 (188-227)||(4200340-4200379)
chr1 (184-234)||(37241739-37241788)
chr1 (192-233)||(6292602-6292643)
chr1 (202-235)||(30013996-30014029)


Alignment Details
Target: chr6 (Bit Score: 527; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 14 - 583
Target Start/End: Complemental strand, 2386795 - 2386226
Alignment:
Q  14 atggacatcatacacgacacagacactgacacaacgacaatgctactaatttgagaaacacacaattcatataagatgttatcataagctagtccttgag 113  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386795 atggacatcagacacgacacagacactgacacaacgacaatgctactaatttgagaaacacacaattcatataagatgttatcataagctagtccttgag 2386696  T
Q  114 ggcttatgaaagtaagctgaaaactacacatggatattttttaagctgtttctgtatattctcaaaaaggctcgcaaatgcttatatcagtagataaact 213  Q
    |||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||  | || |||||||||||    
T  2386695 ggcttatgaaagtaagctgaaaactacgaatggacattttttaagctgtttctgtatattctcaaaaaggctcgcaaatgctgtt-tctgtagataaact 2386597  T
Q  214 taaataagtcaatccaaacagaaagttactgttaatttgaatattcaactttttcttcactagttattgacattttttcttgtgttttcttcctataggg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386596 taaataagtcaatccaaacagaaagttactgttaatttgaatattcaactttttcttcactagttattgacattttttcttgtgttttcttcctataggg 2386497  T
Q  314 acttgcagcattgacaacaacagccctagcaagatcatggcatcacaaaaacagatcaatgtcatcttcatttctttcattatctctctatttaatctca 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386496 acttgcagcattgacaacaacagccctagcaagatcatggcatcacaaaaacagatcaatgtcatcttcatttctttcattatctctctatttaatctca 2386397  T
Q  414 ttaggccaaggtggatataatccatctctacaagcctttggagctgatcaacttggtgaagatgaagaactaccttgtagtaacacagatgatacaagta 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386396 ttaggccaaggtggatataatccatctctacaagcctttggagctgatcaacttggtgaagatgaagaactaccttgtagtaacacagatgatacaagta 2386297  T
Q  514 gcaaca-aaaagcacttttctttcaatggtggtattttggtgtttgtgctggaagcctaatgggtgtaaca 583  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386296 gcaacaaaaaagcacttttctttcaatggtggtattttggtgtttgtgctggaagcctaatgggtgtaaca 2386226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 24333044 - 24333092
Alignment:
Q  188 caaatgcttatatcagtagataaacttaaataagtcaatccaaacagaa 236  Q
    ||||||||||| |||||| ||||||| ||||| ||||||||||||||||    
T  24333044 caaatgcttatgtcagtacataaactgaaatatgtcaatccaaacagaa 24333092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 3525236 - 3525277
Alignment:
Q  194 cttatatcagtagataaacttaaataagtcaatccaaacaga 235  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||    
T  3525236 cttatgtcactagataaacttaaattagtcaatccaaacaga 3525277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 4308887 - 4308928
Alignment:
Q  192 tgcttatatcagtagataaacttaaataagtcaatccaaaca 233  Q
    ||||||| |||||||||||||| ||||||| |||||||||||    
T  4308887 tgcttatgtcagtagataaactcaaataagccaatccaaaca 4308928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 31776228 - 31776191
Alignment:
Q  196 tatatcagtagataaacttaaataagtcaatccaaaca 233  Q
    ||||||||||||||| || |||||||||||||||||||    
T  31776228 tatatcagtagataagctcaaataagtcaatccaaaca 31776191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 30536915 - 30536883
Alignment:
Q  202 agtagataaacttaaataagtcaatccaaacag 234  Q
    |||||||||||| ||||||||||||||||||||    
T  30536915 agtagataaactcaaataagtcaatccaaacag 30536883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 37276854 - 37276896
Alignment:
Q  192 tgcttatatcagtagataaacttaaataagtcaatccaaacag 234  Q
    ||||||||| |||||||||||||||||||||| ||||||||||    
T  37276854 tgcttatattagtagataaacttaaataagtcgatccaaacag 37276896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 37419627 - 37419586
Alignment:
Q  192 tgcttatatcagtagataaacttaaataagtcaatccaaaca 233  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  37419627 tgcttatataagtagataaactcaaataagtcaatccaaaca 37419586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 1830149 - 1830191
Alignment:
Q  192 tgcttatatcagtagataaacttaaataagtcaatccaaacag 234  Q
    ||||||| |||||| ||||||| ||||||||||||||||||||    
T  1830149 tgcttatgtcagtaaataaactcaaataagtcaatccaaacag 1830191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 15370287 - 15370241
Alignment:
Q  188 caaatgcttatatcagtagataaacttaaataagtcaatccaaacag 234  Q
    |||||||||||  |||||||||| || ||||||||||||||||||||    
T  15370287 caaatgcttatgccagtagataagctcaaataagtcaatccaaacag 15370241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 40059418 - 40059381
Alignment:
Q  195 ttatatcagtagataaacttaaataagtcaatccaaac 232  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  40059418 ttatgtcagtagataaactcaaataagtcaatccaaac 40059381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 40085318 - 40085281
Alignment:
Q  195 ttatatcagtagataaacttaaataagtcaatccaaac 232  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  40085318 ttatgtcagtagataaactcaaataagtcaatccaaac 40085281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 43985322 - 43985358
Alignment:
Q  195 ttatatcagtagataaacttaaataagtcaatccaaa 231  Q
    |||| |||||||||||||||||||||||| |||||||    
T  43985322 ttatgtcagtagataaacttaaataagtcgatccaaa 43985358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 28615454 - 28615487
Alignment:
Q  202 agtagataaacttaaataagtcaatccaaacaga 235  Q
    ||||||||||||||||||||||||||||||||||    
T  28615454 agtagataaacttaaataagtcaatccaaacaga 28615487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 679401 - 679444
Alignment:
Q  192 tgcttatatcagtagataaacttaaataagtcaatccaaacaga 235  Q
    |||||||| ||||||||||||| |||||||||||| ||||||||    
T  679401 tgcttataccagtagataaactcaaataagtcaattcaaacaga 679444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 41433481 - 41433528
Alignment:
Q  188 caaatgcttatatcagtagataaacttaaataagtcaatccaaacaga 235  Q
    ||||||||||| |||| ||||||||| |||||||||||| ||||||||    
T  41433481 caaatgcttatgtcaggagataaactcaaataagtcaattcaaacaga 41433528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 233
Target Start/End: Complemental strand, 53034761 - 53034718
Alignment:
Q  190 aatgcttatatcagtagataaacttaaataagtcaatccaaaca 233  Q
    ||||||||||||||||||||| || ||||||||||| |||||||    
T  53034761 aatgcttatatcagtagataagctcaaataagtcaaaccaaaca 53034718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 22662211 - 22662169
Alignment:
Q  192 tgcttatatcagtagataaacttaaataagtcaatccaaacag 234  Q
    ||||||| | |||||||||||| ||||||||||||||||||||    
T  22662211 tgcttatgttagtagataaactcaaataagtcaatccaaacag 22662169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 22666690 - 22666648
Alignment:
Q  192 tgcttatatcagtagataaacttaaataagtcaatccaaacag 234  Q
    ||||||| | |||||||||||| ||||||||||||||||||||    
T  22666690 tgcttatgttagtagataaactcaaataagtcaatccaaacag 22666648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 27043788 - 27043747
Alignment:
Q  194 cttatatcagtagataaacttaaataagtcaatccaaacaga 235  Q
    ||||| ||||||||||| || |||||||||||||||||||||    
T  27043788 cttatgtcagtagataagctcaaataagtcaatccaaacaga 27043747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 52428782 - 52428815
Alignment:
Q  200 tcagtagataaacttaaataagtcaatccaaaca 233  Q
    |||||||||||||| |||||||||||||||||||    
T  52428782 tcagtagataaactcaaataagtcaatccaaaca 52428815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 7368003 - 7367971
Alignment:
Q  203 gtagataaacttaaataagtcaatccaaacaga 235  Q
    ||||||||||| |||||||||||||||||||||    
T  7368003 gtagataaactcaaataagtcaatccaaacaga 7367971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 25571371 - 25571411
Alignment:
Q  194 cttatatcagtagataaacttaaataagtcaatccaaacag 234  Q
    ||||| |||||||||||||| ||||||| ||||||||||||    
T  25571371 cttatgtcagtagataaactcaaataagccaatccaaacag 25571411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 54575570 - 54575522
Alignment:
Q  185 tcgcaaatgcttatatcagtagataaacttaaataagtcaatccaaaca 233  Q
    |||||||||||||| ||  || ||||||| |||||||||||||||||||    
T  54575570 tcgcaaatgcttatgtctataaataaactcaaataagtcaatccaaaca 54575522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 25447203 - 25447162
Alignment:
Q  194 cttatatcagtagataaacttaaataagtcaatccaaacaga 235  Q
    ||||| |||||||||||||| |||||||||||||||||||||    
T  25447203 cttatgtcagtagataaactcaaataagtcaatccaaacaga 25447162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 36507050 - 36507009
Alignment:
Q  194 cttatatcagtagataaacttaaataagtcaatccaaacaga 235  Q
    |||||||||||||||||||| ||||||| |||||||||||||    
T  36507050 cttatatcagtagataaactcaaataagccaatccaaacaga 36507009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 47904039 - 47903997
Alignment:
Q  193 gcttatatcagtagataaacttaaataagtcaatccaaacaga 235  Q
    |||||||||||  |||||||| |||||||||||||||||||||    
T  47904039 gcttatatcagaggataaactcaaataagtcaatccaaacaga 47903997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 26911703 - 26911740
Alignment:
Q  194 cttatatcagtagataaacttaaataagtcaatccaaa 231  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  26911703 cttatgtcagtagataaactcaaataagtcaatccaaa 26911740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 33405150 - 33405114
Alignment:
Q  194 cttatatcagtagataaacttaaataagtcaatccaa 230  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  33405150 cttatgtcagtagataaactcaaataagtcaatccaa 33405114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 39551173 - 39551130
Alignment:
Q  188 caaatgcttatatcagtagataaacttaaataagtcaatccaaa 231  Q
    |||||||||||||| |||||||| || |||||||||||||||||    
T  39551173 caaatgcttatatccgtagataatctcaaataagtcaatccaaa 39551130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 10727464 - 10727497
Alignment:
Q  202 agtagataaacttaaataagtcaatccaaacaga 235  Q
    |||||||||||| |||||||||||||||||||||    
T  10727464 agtagataaactcaaataagtcaatccaaacaga 10727497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 38602439 - 38602479
Alignment:
Q  194 cttatatcagtagataaacttaaataagtcaatccaaacag 234  Q
    ||||| ||||||||||| || ||||||||||||||||||||    
T  38602439 cttatgtcagtagataagctcaaataagtcaatccaaacag 38602479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 28691800 - 28691753
Alignment:
Q  188 caaatgcttatatcagtagataaacttaaataagtcaatccaaacaga 235  Q
    ||||||||||| | || ||||||||| |||||||||||||||||||||    
T  28691800 caaatgcttatgttagcagataaactcaaataagtcaatccaaacaga 28691753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 41040271 - 41040318
Alignment:
Q  188 caaatgcttatatcagtagataaacttaaataagtcaatccaaacaga 235  Q
    ||||| |||||||||||||||||||| |||||| ||||| ||||||||    
T  41040271 caaatacttatatcagtagataaactcaaataaatcaattcaaacaga 41040318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 9210933 - 9210970
Alignment:
Q  194 cttatatcagtagataaacttaaataagtcaatccaaa 231  Q
    ||||||||||||||||| || |||||||||||||||||    
T  9210933 cttatatcagtagataagctcaaataagtcaatccaaa 9210970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 37064426 - 37064385
Alignment:
Q  194 cttatatcagtagataaacttaaataagtcaatccaaacaga 235  Q
    |||||||||||||||||  | |||||||||||||||||||||    
T  37064426 cttatatcagtagataagatcaaataagtcaatccaaacaga 37064385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 44822070 - 44822110
Alignment:
Q  194 cttatatcagtagataaacttaaataagtcaatccaaacag 234  Q
    ||||| |||| ||||||||| ||||||||||||||||||||    
T  44822070 cttatgtcagcagataaactcaaataagtcaatccaaacag 44822110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 18286893 - 18286940
Alignment:
Q  184 ctcgcaaatgcttatatcagtagataaacttaaataagtcaatccaaa 231  Q
    ||||||||||||||||| ||||||||||||  ||||| ||||||||||    
T  18286893 ctcgcaaatgcttatattagtagataaactcgaataattcaatccaaa 18286940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 3280696 - 3280654
Alignment:
Q  192 tgcttatatcagtagataaacttaaataagtcaatccaaacag 234  Q
    |||||| ||||||||||||  ||||||||||||||||||||||    
T  3280696 tgcttaaatcagtagataagtttaaataagtcaatccaaacag 3280654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 32197845 - 32197886
Alignment:
Q  194 cttatatcagtagataaacttaaataagtcaatccaaacaga 235  Q
    ||||| |||||||||||||| ||| |||||||||||||||||    
T  32197845 cttatgtcagtagataaactcaaaaaagtcaatccaaacaga 32197886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 10638484 - 10638452
Alignment:
Q  203 gtagataaacttaaataagtcaatccaaacaga 235  Q
    |||||||| ||||||||||||||||||||||||    
T  10638484 gtagataatcttaaataagtcaatccaaacaga 10638452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 32010065 - 32010097
Alignment:
Q  202 agtagataaacttaaataagtcaatccaaacag 234  Q
    |||||||||||| ||||||||||||||||||||    
T  32010065 agtagataaactcaaataagtcaatccaaacag 32010097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 40335823 - 40335791
Alignment:
Q  202 agtagataaacttaaataagtcaatccaaacag 234  Q
    |||||||||||| ||||||||||||||||||||    
T  40335823 agtagataaactcaaataagtcaatccaaacag 40335791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 4200340 - 4200379
Alignment:
Q  188 caaatgcttatatcagtagataaacttaaataagtcaatc 227  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  4200340 caaatgcttatatcagtatataaactaaaataagtcaatc 4200379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 37241788 - 37241739
Alignment:
Q  184 ctcgcaaatgcttatatcagtagataaacttaaataagtcaatccaaacag 234  Q
    ||||||| |||||||  |||||||||| |||||||||||||||||||||||    
T  37241788 ctcgcaagtgcttatg-cagtagataagcttaaataagtcaatccaaacag 37241739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 6292602 - 6292643
Alignment:
Q  192 tgcttatatcagtagataaacttaaataagtcaatccaaaca 233  Q
    ||||||| ||||||||||| || |||||||||||||||||||    
T  6292602 tgcttatgtcagtagataagctcaaataagtcaatccaaaca 6292643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 30014029 - 30013996
Alignment:
Q  202 agtagataaacttaaataagtcaatccaaacaga 235  Q
    |||||||||||| |||||||||||||||||||||    
T  30014029 agtagataaactcaaataagtcaatccaaacaga 30013996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University